Racemic DNA Crystallography

Pradeep K. Mandal; Gavin W. Collie; Brice Kauffmann; Ivan Huc

doi:10.1002/anie.201409014

Racemic DNA Crystallography

Angewandte Chemie International Edition ◽

10.1002/anie.201409014 ◽

2014 ◽

Vol 53 (52) ◽

pp. 14424-14427 ◽

Cited By ~ 24

Author(s):

Pradeep K. Mandal ◽

Gavin W. Collie ◽

Brice Kauffmann ◽

Ivan Huc

Keyword(s):

Dna Crystallography

Download Full-text

Molecular Packing Interaction in DNA Crystals

Crystals ◽

10.3390/cryst10121093 ◽

2020 ◽

Vol 10 (12) ◽

pp. 1093

Author(s):

Amen Shamim ◽

Nazia Parveen ◽

Vinod Kumar Subramani ◽

Kyeong Kyu Kim

Keyword(s):

Crystal Packing ◽

Structural Information ◽

Key Factors ◽

Factors Affecting ◽

Space Groups ◽

Dna Crystals ◽

Dna Crystallography ◽

Packing Interactions ◽

Packing Interaction

DNA crystallography provides essential structural information to understand the biochemical and biological functions of oligonucleotides. Therefore, it is necessary to understand the factors affecting crystallization of DNA to develop a strategy for production of diffraction-quality DNA crystals. We analyzed key factors affecting intermolecular interactions in 509 DNA crystals from the Nucleic Acid Database and Protein Databank. Packing interactions in DNA crystals were classified into four categories based on the intermolecular hydrogen bonds in base or backbone, and their correlations with other factors were analyzed. From this analysis, we confirmed that hydrogen bonding between terminal end and mid-region is most common in crystal packing and in high-resolution crystal structures. Interestingly, P212121 is highly preferred in DNA crystals in general, but the P61 space group is relatively abundant in A-DNA crystals. Accordingly, P212121 contains more terminal end-mid-region interactions than other space groups, confirming the significance of this interaction. While metals play a role in the production of a good crystal in B-DNA conformation, their effect is not significant in other conformations. From these analyses, we found that packing interaction and other factors have a strong influence on the quality of DNA crystals and provide key information to predict crystal growth of candidate oligonucleotides.

Download Full-text

Z-DNA crystallography

Biopolymers ◽

10.1002/(sici)1097-0282(1997)44:1<65::aid-bip5>3.0.co;2-y ◽

1997 ◽

Vol 44 (1) ◽

pp. 65-90 ◽

Cited By ~ 18

Author(s):

P. Shing Ho ◽

Blaine H. M. Mooers

Keyword(s):

Z Dna ◽

Dna Crystallography

Download Full-text