scholarly journals Structure and Function Converge To Identify a Hydrogen Bond in a Group I Ribozyme Active Site

2009 ◽  
Vol 48 (39) ◽  
pp. 7171-7175 ◽  
Author(s):  
Marcello Forconi ◽  
Raghuvir N. Sengupta ◽  
Mao-Chin Liu ◽  
Alan C. Sartorelli ◽  
Joseph A. Piccirilli ◽  
...  
2009 ◽  
Vol 121 (39) ◽  
pp. 7307-7311 ◽  
Author(s):  
Marcello Forconi ◽  
Raghuvir N. Sengupta ◽  
Mao-Chin Liu ◽  
Alan C. Sartorelli ◽  
Joseph A. Piccirilli ◽  
...  

2016 ◽  
Vol 12 (10) ◽  
pp. 3139-3145 ◽  
Author(s):  
Fei Liao ◽  
Hong Yuan ◽  
Ke-Jie Du ◽  
Yong You ◽  
Shu-Qin Gao ◽  
...  

A single Tyr introduced in the secondary sphere of the heme active site in myoglobin at position 107 or 138 forms a distinct Tyr-associated H-bond network, regulating both the protein properties and functions.


Author(s):  
Albert W. Nyongesaa ◽  
Esther M. Malukib ◽  
Jemimah A. Simbaunib

Khat, Catha edulis, use is rampant in Eastern Africa and Middle East countries with associated reports of reproductive function impairment in the body of the user. Reports on recovery post long-term khat exposure are obscure. The present study investigated evidence of restoration of testicular and epididymal structure and function during withdrawal from cytotoxic damage caused by sub-chronic exposure of khat extract. Twenty-eight male rabbits were divided into 7 groups of 4 rabbits each. Group I (control) was administered normal saline while groups II, III and IV were administered 1.0 g/kg, 10 g/kg and 20 g/kg body weight of khat extract, respectively, via oral gavage on alternate days of the week for 12 weeks. Blood samples from animals were collected for hormonal assays followed by euthanasia using 26.4 mg/kg body weight of Sagatal sodium intramuscularly for testicular and epididymal histology. Group V, VI and VII were administered 1.0 g/kg, 10 g/kg and 20 g/kg body weight of khat extract, respectively, orally on alternate days of the week for 12 weeks followed by 1-month withdrawal period, blood samples collected for hormone assays and animals sacrificed for testicular and epididymal histology. High khat dose, 20 g/kg body weight, at sub-chronic exposure caused degeneration in spermatogenic cells with accompanying decrease in plasma FSH and testosterone. Histological output of Sertoli cells, Leydig cells and epididymal epithelium appeared unaffected in treatment groups. Post withdrawal data showed apparent regeneration of seminiferous epithelium and restoration of plasma FSH and testosterone comparable to control. It appears khat extract preferentially affected germ cell spermatogonia and subsequent daughter cells while stem cell spermatogonia were unaffected and contributed to regeneration of germinal epithelium and endocrine function.


2015 ◽  
Vol 5 (1) ◽  
Author(s):  
A.E. Naas ◽  
A.K. MacKenzie ◽  
B. Dalhus ◽  
V.G.H. Eijsink ◽  
P.B. Pope

Abstract Previous gene-centric analysis of a cow rumen metagenome revealed the first potentially cellulolytic polysaccharide utilization locus, of which the main catalytic enzyme (AC2aCel5A) was identified as a glycoside hydrolase (GH) family 5 endo-cellulase. Here we present the 1.8 Å three-dimensional structure of AC2aCel5A and characterization of its enzymatic activities. The enzyme possesses the archetypical (β/α)8-barrel found throughout the GH5 family and contains the two strictly conserved catalytic glutamates located at the C-terminal ends of β-strands 4 and 7. The enzyme is active on insoluble cellulose and acts exclusively on linear β-(1,4)-linked glucans. Co-crystallization of a catalytically inactive mutant with substrate yielded a 2.4 Å structure showing cellotriose bound in the −3 to −1 subsites. Additional electron density was observed between Trp178 and Trp254, two residues that form a hydrophobic “clamp”, potentially interacting with sugars at the +1 and +2 subsites. The enzyme’s active-site cleft was narrower compared to the closest structural relatives, which in contrast to AC2aCel5A, are also active on xylans, mannans and/or xyloglucans. Interestingly, the structure and function of this enzyme seem adapted to less-substituted substrates such as cellulose, presumably due to the insufficient space to accommodate the side-chains of branched glucans in the active-site cleft.


1998 ◽  
Vol 26 (2) ◽  
pp. 178-183 ◽  
Author(s):  
R. D. Branson ◽  
R. S. Campbell ◽  
K. Davis ◽  
D. T. Porembka

We compared the effects of humidity delivered by the circle system at low fresh gas flows (FGF) with a conventional two-limb and coaxial circuit on the structure and function of the tracheobronchial epithelium in dogs. Animals were anaesthetized and mechanically ventilated using an anaesthesia ventilator to maintain normocarbia. Group I (control) animals received a FGF equal to the required minute ventilation mimicking an open circuit technique. Group II and III animals had FGF set at 20% of the required minute ventilation. Group II used a two-limb circuit and Group III used a coaxial circuit. Relative humidity and temperature of inspired gases were measured at baseline and hourly afterwards. In the first experiment, biopsies of the tracheobronchial tree were obtained bronchoscopically at baseline and then hourly for six hours. Microscopic examination of these samples allowed calculation of mean ciliary length. In the second experiment, tracheal mucus flow velocity (TMFV) was measured at baseline and hourly afterward, using a cinebroncho-fibrescopic method. Delivered absolute humidity was greatest with low FGF and the coaxial circuit, followed by low FGF and a conventional circuit, and high FGF (15±1.4 vs 9±0.8 vs 5±0.4 mg H2O, P<0.01) after two hours. Mean cilia length (μ m) and TMFV (mm/min) fell during the first hour in all three groups. At hour two TMFV returned to baseline in Group III and was significantly greater than Groups I and II (0.8±0.4 vs 8.6±1.1 vs 15.4±2.1, P<0.001). Mean ciliary length demonstrated a similar pattern with reductions from baseline in all three groups for the first two hours. Groups II and III had an increase in cilia length beginning at hour three and were both significantly greater than Group I at hours 3 through 6 (1.3±0.5 vs 3.2±1.1 vs 4.2±0.8, P <0.001). Alterations in tracheobronchial structure and function result from exposure to dry gases and are amplified by the duration of exposure. Our findings suggest a minimum of 12 to 15 mg H2O/l is necessary to prevent these alterations. In this study, the combination of low FGF and a coaxial anaesthesia circuit reached this minimum threshold more quickly than a conventional two-limb circuit.


Author(s):  
Brian M. Hoffman ◽  
Victoria J. DeRose ◽  
Peter E. Doan ◽  
Ryszard J. Gurbiel ◽  
Andrew L. P. Houseman ◽  
...  

1993 ◽  
Vol 25 (2) ◽  
pp. 121-136 ◽  
Author(s):  
Jonathan P. Hosler ◽  
Shelagh Ferguson-Miller ◽  
Melissa W. Calhoun ◽  
Jeffrey W. Thomas ◽  
John Hill ◽  
...  

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