scholarly journals Development of a Rapid Foodborne-pathogen-detection Method Involving Whole-genome Amplification

2016 ◽  
Vol 48 (2) ◽  
pp. 128-132
Author(s):  
Ji-Yeong Seong ◽  
Young-Jun Ko ◽  
Hyeon-Koon Myeong ◽  
Se-Wook Oh
Keyword(s):  
Pathogen Detection ◽  
Whole Genome Amplification ◽  
Detection Method ◽  
Foodborne Pathogen ◽  
Whole Genome ◽  
Genome Amplification ◽  
Foodborne Pathogen Detection

scholarly journals Quantifying genome DNA during whole-genome amplification via quantitative real-time multiple displacement amplification

RSC Advances ◽  
2021 ◽  
Vol 11 (8) ◽  
pp. 4617-4621
Author(s):  
Jing Tu ◽  
Yi Qiao ◽  
Yuhan Luo ◽  
Naiyun Long ◽  
Zuhong Lu
Keyword(s):  
Real Time ◽  
Whole Genome Amplification ◽  
Multiple Displacement Amplification ◽  
Whole Genome ◽  
Genome Amplification

Monitoring multiple displacement amplification by fluorescence signals.

scholarly journals Species Identification of Pinus Pollen Found in Belukha Glacier, Russian Altai Mountains, Using a Whole-Genome Amplification Method

Forests ◽  
2018 ◽  
Vol 9 (8) ◽  
pp. 444
Author(s):  
Fumio Nakazawa ◽  
Yoshihisa Suyama ◽  
Satoshi Imura ◽  
Hideaki Motoyama
Keyword(s):  
Species Identification ◽  
Whole Genome Amplification ◽  
Pollen Grains ◽  
Pollen Grain ◽  
Pinus Sibirica ◽  
Whole Genome ◽  
Accurate Identification ◽  
Closely Related Species ◽  
Genome Amplification ◽  
Amplification Method

Pollen taxa in sediment samples can be identified based on morphology. However, closely related species do not differ substantially in pollen morphology, and accurate identification is generally limited to genera or families. Because many pollen grains in glaciers contain protoplasm, genetic information obtained from pollen grains should enable the identification of plant taxa at the species level. In the present study, species identification of Pinus pollen grains was attempted using whole-genome amplification (WGA). We used pollen grains extracted from surface snow (depth, 1.8–1.9 m) from the Belukha glacier in the summer of 2003. WGA was performed using a single pollen grain. Some regions of the chloroplast genome were amplified by PCR, and the DNA products were sequenced to identify the pollen grain. Pinus includes approximately 111 recognized species in two subgenera, four sections, and 11 subsections. The tree species Pinus sibirica and P. sylvestris are currently found at the periphery of the glacier. We identified the pollen grains from the Belukha glacier to the level of section or subsection to which P. sibirica and P. sylvestris belong. Moreover, we specifically identified two pollen grains as P. sibirica or P. cembra. Fifteen species, including P. sibirica, were candidates for the remaining pollen grain.

scholarly journals Correcting palindromes in long reads after whole-genome amplification

BMC Genomics ◽  
2018 ◽  
Vol 19 (1) ◽  
Author(s):  
Sven Warris ◽  
Elio Schijlen ◽  
Henri van de Geest ◽  
Rahulsimham Vegesna ◽  
Thamara Hesselink ◽  
...  
Keyword(s):  
Whole Genome Amplification ◽  
Whole Genome ◽  
Genome Amplification ◽  
Long Reads
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