scholarly journals Evolutionary history of the Cameroon radiation of puddle frogs (Phrynobatrachidae: Phrynobatrachus), with descriptions of two critically endangered new species from the northern Cameroon Volcanic Line

PeerJ ◽  
2020 ◽  
Vol 8 ◽  
pp. e8393 ◽  
Author(s):  
Václav Gvoždík ◽  
Tadeáš Nečas ◽  
Matej Dolinay ◽  
Breda M. Zimkus ◽  
Andreas Schmitz ◽  
...  
Keyword(s):  
New Species ◽  
Phylogenetic Analyses ◽  
Central Africa ◽  
Molecular Data ◽  
Species Group ◽  
Critically Endangered ◽  
Cameroon Volcanic Line ◽  
Northern Cameroon ◽  
West And Central Africa ◽  
Mountain Chain

The Cameroon Volcanic Line, a mountain chain located between West and Central Africa, is a region of numerous endemic diversifications, including of puddle frogs (Phrynobatrachus). This study reviews the phylogeny and taxonomy of puddle frogs of the “Cameroon radiation,” which is a clade containing mainly montane but also at least three lowland species. Molecular data revealed a novel evolutionary lineage from high altitudes in the northern part of the mountains. Puddle frogs from the new, minute-sized (SVL < 20 mm) lineage are identified using molecular, morphological and acoustic data and described as two new species, Phrynobatrachus arcanus sp. nov. (Gotel Mountains, Cameroon–Nigeria) and P. mbabo sp. nov. (Tchabal Mbabo, Cameroon). The tadpole of the first species is also described. Phylogenetic analyses placed the new lineage to the proximity of the recently described lowland small-sized taxa (P. horsti, P. ruthbeateae). Based on the inferred phylogeny, we propose five species groups within the Cameroon radiation: P. arcanus, P. chukuchuku, P. ruthbeateae, P. steindachneri, and P. werneri. The taxonomically enigmatic P. hylaios is proposed to be a member of the P. ruthbeateae species group. The basal radiation evolved during the late Miocene with subsequent diversifications occurring during the Pliocene, while closely related terminal taxa originated during the Pleistocene. We recommend that the newly described species are categorized as Critically Endangered due to their limited ranges and because recent surveys did not identify any individuals at the type localities. This further supports the need for conservation interventions in the mountains of Cameroon and Nigeria.

scholarly journals A new species of marsupial frog (Anura; Gastrotheca) from the Cordillera de Colán in northeastern Peru

2021 ◽  
Vol 71 ◽  
pp. 201-218
Author(s):  
Pablo J. Venegas ◽  
Luis A. García-Ayachi ◽  
Lourdes Y. Echevarría ◽  
Daniel J. Paluh ◽  
Juan C. Chávez–Arribasplata ◽  
...  
Keyword(s):  
New Species ◽  
Fungal Pathogen ◽  
Batrachochytrium Dendrobatidis ◽  
Phylogenetic Analyses ◽  
Ct Scanning ◽  
Morphological Characters ◽  
Molecular Data ◽  
Species Group ◽  
Micro Ct ◽  
A New Species

We describe a new species of marsupial frog, genus Gastrotheca, using morphological characters and molecular data as lines of evidence. The new species was discovered in the páramo and the ecotone between páramo and humid montane forest of Cordillera de Colán, at elevations between 3136 and 3179 m a.s.l., in northeastern Peru. The new species is distinguished from all its congeners by the combination of the following characters: coarsely granular skin on dorsum, a green dorsal coloration without pattern, finger I shorter than finger II, turquoise iris, and a venter without blotches, flecks or dots. Furthermore, we include a detailed osteological description of the new Gastrotheca species based on Micro-CT scanning. Based on our phylogenetic analyses, the new species belongs to the Gastrotheca marsupiata species group, is sister to G. oresbios and closely related to G. psychrophila, G. spectabilis, G. stictopleura and one undescribed species. Additionally, we test for the presence of the fungal pathogen Batrachochytrium dendrobatidis (Bd). No Bd infection was detected for G. gemma sp. nov. specimens but Bd prevalence was detected among syntopic frogs.

Two new species of Cyrtodactylus (Squamata: Gekkonidae) from northern Laos, including new finding and expanded diagnosis of C. bansocensis

Zootaxa ◽  
2020 ◽  
Vol 4822 (4) ◽  
pp. 503-530
Author(s):  
NICOLE SCHNEIDER ◽  
VINH QUANG LUU ◽  
SALY SITTHIVONG ◽  
ALEXANDRE TEYNIÉ ◽  
MINH DUC LE ◽  
...  
Keyword(s):  
New Species ◽  
Genetic Divergence ◽  
New Record ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Species Group ◽  
Coi Gene ◽  
Two New Species ◽  
New Finding ◽  
Morphological And Molecular Data

Two new Cyrtodactylus species are described from Houaphan and Luang Prabang provinces in Laos based on morphological and molecular data. Cyrtodactylus houaphanensis sp. nov. differs from all other Cyrtodactylus in the C. wayakonei species group by at least 3.3 % genetic divergence in the COI gene and can be diagnosed in morphology as follows: SVL 75.8 mm; supralabials 9 or 10; infralabials 8 or 9; ventral scales 35; dorsal tubercles in 20 rows at midbody; precloacal pores 6 in the male; femoral pores absent; subcaudals enlarged; five irregular, brown bands between limb insertions. The new species morphologically resembles C. chauquangensis and revealed to be a sister taxon to C. puhuensis according to our genetic analyses, from which it mainly differs in the absence of enlarged femoral scales. Cyrtodactylus ngoiensis sp. nov. differs from other closely related congeners by at least 11.6 % genetic divergence in the COI gene and can be diagnosed in morphology as follows: maximum SVL 95.3 mm; supralabials 6–9; infralabials 8–11; ventral scales 38–43; dorsal tubercles in 15–21 rows at midbody; enlarged femoral scales present; precloacal pores 7 in the male, 7 pitted scales in females; femoral pores 14 in the male, absent in females; five bright yellowish transverse dorsal bands; subcaudals enlarged. The new species is shown to be a member of the C. wayakonei species group, but morphologically resembles C. dumnuii from Thailand. According to our phylogenetic analyses, it is a basal taxon to a clade comprising C. spelaeus, C. chauquangensis, C. vilaphongi, C. cucphuongensis, C. puhuensis, C. houaphanensis, C. otai and C. bobrovi. Based on a new record of C. bansocensis from central Laos, which represents the first recorded female we provide a redescription of C. bansocensis including expanded diagnosis. In addition, an updated identification key for the Cyrtodactylus known from Laos is provided. 

scholarly journals Loose Ends in the Cortinarius Phylogeny: Five New Myxotelamonoid Species Indicate a High Diversity of These Ectomycorrhizal Fungi with South American Nothofagaceae

Life ◽  
2021 ◽  
Vol 11 (5) ◽  
pp. 420
Author(s):  
María Eugenia Salgado Salomón ◽  
Carolina Barroetaveña ◽  
Tuula Niskanen ◽  
Kare Liimatainen ◽  
Matthew E. Smith ◽  
...  
Keyword(s):  
New Species ◽  
Current Knowledge ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Global Scale ◽  
South American ◽  
Edible Fungi ◽  
Rdna Its ◽  
Morphological And Molecular Data ◽  
High Diversity

This paper is a contribution to the current knowledge of taxonomy, ecology and distribution of South American Cortinarius (Pers.) Gray. Cortinarius is among the most widely distributed and species-rich basidiomycete genera occurring with South American Nothofagaceae and species are found in many distinct habitats, including shrublands and forests. Due to their ectomycorrhizal role, Cortinarius species are critical for nutrient cycling in forests, especially at higher latitudes. Some species have also been reported as edible fungi with high nutritional quality. Our aim is to unravel the taxonomy of selected Cortinarius belonging to phlegmacioid and myxotelamonioid species based on morphological and molecular data. After widely sampling Cortinarius specimens in Patagonian Nothofagaceae forests and comparing them to reference collections (including holotypes), we propose five new species of Cortinarius in this work. Phylogenetic analyses of concatenated rDNA ITS-LSU and RPB1 sequences failed to place these new species into known Cortinarius sections or lineages. These findings highlight our knowledge gaps regarding the fungal diversity of South American Nothofagaceae forests. Due to the high diversity of endemic Patagonian taxa, it is clear that the South American Cortinarius diversity needs to be discovered and described in order to understand the evolutionary history of Cortinarius on a global scale.

First record of the Cyrtodactylus brevipalmatus group (Squamata: Gekkonidae) from Vietnam with description of a new species

Zootaxa ◽  
2021 ◽  
Vol 4969 (3) ◽  
pp. 492-510
Author(s):  
DZUNG TRUNG LE ◽  
SALY SITTHIVONG ◽  
TUNG THANH TRAN ◽  
L. LEE GRISMER ◽  
TRUONG QUANG NGUYEN ◽  
...  
Keyword(s):  
New Species ◽  
First Record ◽  
Molecular Data ◽  
Species Group ◽  
Molecular Analyses ◽  
Hind Limbs ◽  
Morphological And Molecular Data ◽  
Dorsal Pattern ◽  
A New Species ◽  
Dorsal Tubercle

A new species of the genus Cyrtodactylus is described from Dien Bien Province, northwestern Vietnam based on morphological and molecular data. Cyrtodactylus ngati sp. nov. can be distinguished from remaining congeners by the following combination of characters: maximum SVL 69.3 mm; dorsal pattern consisting of six dark irregular transverse bands between limb insertions; inter-supranasals one; dorsal tubercles present on occiput, body, hind limbs and on first half of tail; 17–22 irregular dorsal tubercle rows at midbody; lateral folds clearly defined, with interspersed tubercles; 32–38 ventral scales between ventrolateral folds; 13 precloacal pores separated by a diastema of 5/5 poreless scales from a series of 7/7 femoral pores in enlarged femoral scales; precloacal and femoral pores absent in females; 1–3 postcloacal tubercles on each side; transversely enlarged median subcaudal scales absent. In the molecular analyses, the new species is shown to be the sister taxon to C. interdigitalis from Thailand. This is the 47th species of the genus Cyrtodactylus and the first member of the C. brevipalmatus species group recorded from Vietnam. 

Xylodon bambusinus and X. xinpingensis spp. nov. (Hymenochaetales) from southern China

Phytotaxa ◽  
2021 ◽  
Vol 511 (3) ◽  
Author(s):  
XIANG MA ◽  
CHANG-LIN ZHAO
Keyword(s):  
New Species ◽  
Bayesian Inference ◽  
Maximum Likelihood ◽  
Growth Habit ◽  
Southern China ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Two New Species ◽  
Thin Walled ◽  
Inference Methods

Two new species, Xylodon bambusinus and X. xinpingensis, are proposed based on morphological and molecular evidences. Both species share the annual growth habit, resupinate basidiomata and monomitic hyphal system with clamped, colorless generative hyphae, smooth, thin-walled basidiospores, but X. bambusinus is characterized by the smooth to tuberculate hymenial surface, presence of capitate and fusiform cystidia, broad ellipsoid basidiospores, while X. xinpingensis by the reticulate hymenophore with cream hymenial surface, and subglobose basidiospores (4.5–6 × 3.5–5 µm). Sequences of ITS and LSU nrRNA gene regions of the studied samples were generated, and phylogenetic analyses were performed with maximum likelihood, maximum parsimony and Bayesian inference methods. The phylogenetic analyses based on molecular data of ITS and ITS+nLSU sequences showed that X. bambusinus was sister to X. subclavatus, while X. xinpingensis grouped with X. astrocystidiatus and X. paradoxus. The nLSU dataset revealed that X. bambusinus grouped with X. asperus and X. brevisetus with lower supports, and that X. xinpingensis grouped with X. astrocystidiatus and X. paradoxus and then with X. rimosissimus without supports. Both morphological and molecular evidences confirmed the placement of two new species in Xylodon. Description and figures from the new species and a key to the known species of Xylodon from China are presented.

 A new genus of angraecoid orchids (Orchidaceae: Angraecinae) with highly distinctive pollinaria morphology, including three new species from tropical West and Central Africa

Phytotaxa ◽  
2018 ◽  
Vol 373 (2) ◽  
pp. 99
Author(s):  
PASCAL DESCOURVIÈRES ◽  
JOÃO N. M. FARMINHÃO ◽  
VINCENT DROISSART ◽  
JEAN-YVES DUBUISSON ◽  
MURIELLE SIMO-DROISSART ◽  
...  
Keyword(s):  
New Species ◽  
New Genus ◽  
Conservation Status ◽  
Central Africa ◽  
Iucn Red List ◽  
Valid Species ◽  
Preliminary Assessment ◽  
West And Central Africa ◽  
Three New Species ◽  
Angraecoid Orchids

A recent large phylogenetic tree for the angraecoid orchids has shown that the Afrotropical genus Diaphananthe is polyphyletic with a small group of four species sister to Aerangis and Eurychone. These species have diagnostic morphological features different from any other angraecoids, notably an erose to fringed surface of the stipes and a calceiform viscidium. Diaphananthe quintasii, which has been regarded as conspecific with D. rohrii, is reinstated as a valid species and lectotypified, and Diaphananthe alfredii and Rhipidoglossum magnicalcar are put in synonymy under D. quintasii. To accommodate this group of species, along with three new taxa from West and Central Africa, a new genus named Kylicanthe is here described. Four new combinations are thus proposed, and K. bueae is chosen as the type species of the new genus and neotypified. Additionally, K. arcuata, K. cornuata, and K. perezverae are described as new species. An identification key for Kylicanthe and allied genera is presented, as well as one for the seven species in the genus. Notes on ecology and distribution in addition to a preliminary assessment of conservation status following the IUCN Red List are also provided.

scholarly journals A re-examination of the molecular systematics and phylogeography of taxa of the Peromyscus aztecus species group, with comments on the distribution of P. winkelmanni

Therya ◽  
2021 ◽  
Vol 12 (2) ◽  
pp. 331-346
Author(s):  
C. William Kilpatrick ◽  
Nelish Pradhan ◽  
Ryan W Norris
Keyword(s):  
Phylogenetic Analyses ◽  
Distinct Species ◽  
Molecular Study ◽  
Molecular Data ◽  
Species Group ◽  
Cytb Sequence ◽  
Voucher Specimen ◽  
Cranial Measurements ◽  
Mitochondrial Cytochrome B ◽  
Isthmus Of Tehuantepec

The objectives of this study are to examine the available molecular data from the mitochondrial cytochrome-b gene (Cytb) and a concatenated dataset with this gene and two nuclear introns (Adh-1-I2 and Fgb-I7) to reexamine the systematic and phylogeographic conclusions reached by Sullivan et al. (1997) concerning the Peromyscus aztecus species group. The divergence of samples of P. aztecus oaxacensis across the Isthmus of Tehuantepec are further examined and taxonomic revisions are suggested. In addition, this study reviews the sources of data that lead to the conclusion that P. winkelmanni occurred in the Sierra Madre del Sur in Guerrero including a morphometric examination of a reported voucher. Bayesian and maximum likelihood analyses were conducted on a dataset of 31 Cytb sequences of all taxa in the P. aztecus group except for P. a. cordillerae and a concatenated dataset including five individuals of this group. Representative taxa of the P. boylii, P. mexicanus, and P. truei groups were included in both analyses. Body and cranial measurements of the voucher of the P. winkelmanni from Guerrero from which a Cytb sequence is reported to have been obtained was compared with measurements from specimens taken from the vicinity of Dos Aguas, Michoacán, including the type locality. We identified seven instances involving problematic identifications in GenBank. Once these issues were addressed, well-supported monophyletic sister clades of the P. aztecus and P. boylii species groups were recovered from phylogenetic analyses of Cytb sequences (Fig 1). Phylogenetic analyses of the Cytb and the concatenated datasets recover similar topologies that support the relationships of taxa of the aztecus group proposed by an earlier molecular study. Populations of P. a. oaxacensis southeast of the Isthmus of Tehuantepec represent a distinct species. Measurements of the voucher from Guerrero identified as the source of a P. winkelmanni Cytb sequence are smaller than P. winkelmanni for several characters. The divergent populations of P. a. oaxacensis from southeast of the Isthmus of Tehuantepec are recognized as two subspecies of P. cordillerae, P. c. cordillerae and P. c. hondurensis, whereas those northwest of the Isthmus are retained as P. a. oaxacensis. The lack of genetic divergence observed between P. a. evides and P. a. oaxacensis questions whether these two taxa should continue to be recognized as separate subspecies. Northern and southern populations of P. spicilegus demonstrate moderate divergence and additional examination of morphological and molecular differentiation within this taxon is warranted. The distribution of P. winkelmanni should be restricted to the vicinity of Dos Aguas, Michoacán, due to the lack of a voucher specimen that would confirm its reported occurrence in Guerrero.

The Vietnamese population of Megophrys kuatunensis (Amphibia: Megophryidae) represents a new species of Asian horned frog from Vietnam and southern China

Zootaxa ◽  
2017 ◽  
Vol 4344 (3) ◽  
pp. 465 ◽  
Author(s):  
BENJAMIN TAPLEY ◽  
TIMOTHY CUTAJAR ◽  
STEPHEN MAHONY ◽  
CHUNG THANH NGUYEN ◽  
VINH QUANG DAU ◽  
...  
Keyword(s):  
New Species ◽  
Southern China ◽  
Phylogenetic Analyses ◽  
Eastern China ◽  
Taxonomic Status ◽  
Species Group ◽  
Type Specimens ◽  
Vietnamese Population ◽  
Group A ◽  
A New Species

The Asian frog genus Megophrys is a diverse group of morphologically conserved, forest-dwelling frogs. The genus harbours highly localised species diversification and new species continue to be described on a regular basis. We examined the taxonomic status of a population of Megophrys frogs from the Hoang Lien Range in northern Vietnam and southern China previously identified as M. kuatunensis (subgenus Panophrys). Preliminary phylogenetic analyses using a fragment of 16S rDNA places the species in question within the Megophrys (subgenus Panophrys) species group, a primarily Chinese radiation within the genus. On the basis of morphological, molecular and bioacoustic data, we conclude that this population does not represent M. kuatunensis, or any known species in the genus. We herein describe this species of Megophrys as new. Known only from Sa Pa District, Lao Cai Province in Vietnam and Jinping County, Yunnan Province in China, the new species is likely to be threatened by ongoing deforestation in the region. We provide an updated species description of M. kuatunensis based on type specimens, and suggest that M. kuatunensis is likely to be restricted to eastern China.  

A curious nematode, Diploscapteroides persicus n. sp. (Nematoda: Rhabditida: Rhabditomorpha), from Iran with a note on the status of the male genital papillae

Nematology ◽  
2015 ◽  
Vol 17 (9) ◽  
pp. 1045-1056 ◽  
Author(s):  
Razieh Ghaemi ◽  
Ebrahim Pourjam ◽  
Sergio Álvarez-Ortega ◽  
Majid Pedram ◽  
Mohammad Reza Atighi
Keyword(s):  
New Species ◽  
Phylogenetic Analyses ◽  
Tail Length ◽  
Molecular Data ◽  
Rrna Genes ◽  
Valid Species ◽  
Female Tail ◽  
The Status ◽  
Species Being ◽  
Male Genital

Diploscapteroides persicus n. sp. is described and illustrated based on morphological, morphometric and molecular data. The new species is mainly characterised by female body length of 469-673 μm, female tail length of 51-99 μm, shape of gubernaculum and spicules and arrangement of male genital papillae. Also, the arrangement of male genital papillae of the new species shows the presence of precloacal papillae, a feature that has not been previously described for the genus. The new species is comparable with all valid species of the genus, namely D. boettgeri, D. brevicauda, D. chitinolabiatus, D. coroniger, D. dacchensis and D. flexuosus, from which the morphological comparisons of the new species with aforementioned species are discussed. Phylogenetic analyses using partial sequences of SSU and LSU rRNA genes were performed for the new species, being the first representative of the genus to be phylogenetically studied using both Bayesian inference (BI) and maximum likelihood (ML) methods, and revealed that D. persicus n. sp. formed a clade with a species of Cephaloboides.

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