scholarly journals Genetic structure of Australian glass shrimp, Paratya australiensis, in relation to altitude

PeerJ ◽  
2020 ◽  
Vol 8 ◽  
pp. e8139
Author(s):  
Sharmeen Rahman ◽  
Daniel Schmidt ◽  
Jane M. Hughes
Keyword(s):  
Population Structure ◽  
Spatial Scales ◽  
High Elevation ◽  
Outlier Analysis ◽  
Parallel Patterns ◽  
Eastern Australia ◽  
Cryptic Species Complex ◽  
Paratya Australiensis ◽  
Parallel Pattern ◽  
Southeast Queensland

Paratya australiensis Kemp (Decapoda: Atyidae) is a widely distributed freshwater shrimp in eastern Australia. The species has been considered as an important stream organism for studying genetics, dispersal, biology, behaviour and evolution in atyids and is a major food source for stream dwelling fishes. Paratya australiensis is a cryptic species complex consisting of nine highly divergent mitochondrial DNA lineages. Previous studies in southeast Queensland showed that “lineage 4” favours upstream sites at higher altitudes, with cooler water temperatures. This study aims to identify putative selection and population structure between high elevation and low elevation populations of this lineage at relatively small spatial scales. Sample localities were selected from three streams: Booloumba Creek, Broken Bridge Creek and Obi Obi Creek in the Conondale Range, southeast Queensland. Six sample localities, consisting of 142 individuals in total were sequenced using double digest Restriction Site Associated DNA-sequencing (ddRAD-seq) technique. Among the 142 individuals, 131 individuals shared 213 loci. Outlier analysis on 213 loci showed that 27 loci were putatively under selection between high elevation and low elevation populations. Outlier analysis on individual streams was also done to test for parallel patterns of adaptation, but there was no evidence of a parallel pattern. Population structure was observed using both the 27 outliers and 186 neutral loci and revealed similar population structure in both cases. Therefore, we cannot differentiate between selection and drift here. The highest genetic differentiation was observed between high elevation and low elevation populations of Booloumba Creek, with small levels of differentiation in the other two streams.

scholarly journals Patterns of genetic structuring at the northern limits of the Australian smelt (Retropinna semoni) cryptic species complex

PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e4654 ◽  
Author(s):  
Md Rakeb-Ul Islam ◽  
Daniel J. Schmidt ◽  
David A. Crook ◽  
Jane M. Hughes
Keyword(s):  
Population Structure ◽  
Genetic Structure ◽  
Cryptic Species ◽  
Species Complex ◽  
Gene Tree ◽  
Genetic Connectivity ◽  
Phylogeographic Structure ◽  
Genetic Structuring ◽  
Eastern Australia ◽  
Cryptic Species Complex

Freshwater fishes often exhibit high genetic population structure due to the prevalence of dispersal barriers (e.g., waterfalls) whereas population structure in diadromous fishes tends to be weaker and driven by natal homing behaviour and/or isolation by distance. The Australian smelt (Retropinnidae:Retropinna semoni) is a native fish with a broad distribution spanning inland and coastal drainages of south-eastern Australia. Previous studies have demonstrated variability in population genetic structure and movement behaviour (potamodromy, facultative diadromy, estuarine residence) across the southern part of its geographic range. Some of this variability may be explained by the existence of multiple cryptic species. Here, we examined genetic structure of populations towards the northern extent of the species’ distribution, using ten microsatellite loci and sequences of the mitochondrial cytbgene. We tested the hypothesis that genetic connectivity among rivers should be low due to a lack of dispersal via the marine environment, but high within rivers due to dispersal. We investigated populations corresponding with two putative cryptic species, SEQ-North (SEQ-N), and SEQ-South (SEQ-S) lineages occurring in south east Queensland drainages. These two groups formed monophyletic clades in the mtDNA gene tree and among river phylogeographic structure was also evident within each clade. In agreement with our hypothesis, highly significant overallFSTvalues suggested that both groups exhibit very low dispersal among rivers (SEQ-SFST= 0.13; SEQ-NFST= 0.27). Microsatellite data indicated that connectivity among sites within rivers was also limited, suggesting dispersal may not homogenise populations at the within-river scale. Northern groups in the Australian smelt cryptic species complex exhibit comparatively higher among-river population structure and smaller geographic ranges than southern groups. These properties make northern Australian smelt populations potentially susceptible to future conservation threats, and we define eight genetically distinct management units along south east Queensland to guide future conservation management. The present findings at least can assist managers to plan for effective conservation and management of different fish species along coastal drainages of south east Queensland, Australia.

Distribution and life history of caridean shrimps in regulated lowland rivers in southern Australia

2004 ◽  
Vol 55 (3) ◽  
pp. 295 ◽  
Author(s):  
A. J. Richardson ◽  
J. E. Growns ◽  
R. A. Cook
Keyword(s):  
Life History ◽  
Life Stages ◽  
Lowland Rivers ◽  
Flow Alteration ◽  
Eastern Australia ◽  
History Of ◽  
Paratya Australiensis ◽  
Juvenile Stages ◽  
Shrimp Abundance ◽  
Large Adult

Caridean shrimps are an integral component of lowland river ecosystems in south-eastern Australia, but their distributions may be affected by flow alteration. Monthly shrimp samples were collected from slackwaters in three hydrologically distinct sections of the heavily regulated Campaspe River and the less regulated Broken River for three consecutive years. The distributions of Paratya australiensis, Caridina mccullochi and Macrobrachium australiense, along with their life history in river sections with different hydrology are outlined. Paratya australiensis and M. australiense occurred in all sections, but C. mccullochi was absent from sections of the Campaspe River that received irrigation flows during summer/autumn. Shrimp larvae were most abundant in summer (December–February) and juvenile recruitment continued through to mid autumn (April). Breeding and recruitment of P. australiensis occurred for longer than other shrimps. Apart from large adult and berried M. australiense, all life stages of shrimps commonly occurred in slackwaters, particularly the larval and juvenile stages. Irrigation flows in summer/autumn probably adversely affect the size, extent and arrangement of slackwaters, at a time when they may be critical habitats for C. mccullochi larval development and recruitment. Dams and weirs in the Campaspe River may have influenced shrimp abundance and the timing of breeding.

scholarly journals Constant wind regimes during the Last Glacial Maximum and early Holocene: evidence from Little Llangothlin Lagoon, New England Tablelands, eastern Australia

2016 ◽  
Vol 12 (7) ◽  
pp. 1435-1444 ◽  
Author(s):  
James Shulmeister ◽  
Justine Kemp ◽  
Kathryn E. Fitzsimmons ◽  
Allen Gontz
Keyword(s):  
Last Glacial Maximum ◽  
High Elevation ◽  
Glacial Maximum ◽  
Early Holocene ◽  
Luminescence Dating ◽  
Ice Age ◽  
Last Glacial ◽  
Eastern Australia ◽  
The Last Glacial Maximum ◽  
The Last Glacial

Abstract. Here we present the results of a multi-proxy investigation – integrating geomorphology, ground-penetrating radar, and luminescence dating – of a high-elevation lunette and beach berm in northern New South Wales, eastern Australia. The lunette occurs on the eastern shore of Little Llangothlin Lagoon and provides evidence for a lake high stand combined with persistent westerly winds at the Last Glacial Maximum (LGM – centring on 21.5 ka) and during the early Holocene (ca. 9 and 6 ka). The reconstructed atmospheric circulation is similar to the present-day conditions, and we infer no significant changes in circulation at those times, as compared to the present day. Our results suggest that the Southern Hemisphere westerlies were minimally displaced in this sector of Australasia during the latter part of the last ice age. Our observations also support evidence for a more positive water balance at the LGM and early Holocene in this part of the Australian sub-tropics.

scholarly journals Variability of Cloudiness over Mountain Terrain in the Western United States

2017 ◽  
Vol 18 (5) ◽  
pp. 1227-1245 ◽  
Author(s):  
Edwin Sumargo ◽  
Daniel R. Cayan
Keyword(s):  
United States ◽  
Large Scale ◽  
Spatial Scales ◽  
High Elevation ◽  
Empirical Orthogonal Functions ◽  
Western United States ◽  
Spatial And Temporal Variability ◽  
Regional Patterns ◽  
Cloud Albedo

Abstract This study investigates the spatial and temporal variability of cloudiness across mountain zones in the western United States. Daily average cloud albedo is derived from a 19-yr series (1996–2014) of half-hourly Geostationary Operational Environmental Satellite (GOES) images. During springtime when incident radiation is active in driving snowmelt–runoff processes, the magnitude of daily cloud variations can exceed 50% of long-term averages. Even when aggregated over 3-month periods, cloud albedo varies by ±10% of long-term averages in many locations. Rotated empirical orthogonal functions (REOFs) of daily cloud albedo anomalies over high-elevation regions of the western conterminous United States identify distinct regional patterns, wherein the first five REOFs account for ~67% of the total variance. REOF1 is centered over Northern California and Oregon and is pronounced between November and March. REOF2 is centered over the interior northwest and is accentuated between March and July. Each of the REOF/rotated principal components (RPC) modes associates with anomalous large-scale atmospheric circulation patterns and one or more large-scale teleconnection indices (Arctic Oscillation, Niño-3.4, and Pacific–North American), which helps to explain why anomalous cloudiness patterns take on regional spatial scales and contain substantial variability over seasonal time scales.

Genetic isolation by distance and localized fjord population structure in Pacific cod (Gadus macrocephalus): limited effective dispersal in the northeastern Pacific Ocean

2009 ◽  
Vol 66 (1) ◽  
pp. 153-166 ◽  
Author(s):  
Kathryn Maja Cunningham ◽  
Michael Francis Canino ◽  
Ingrid Brigette Spies ◽  
Lorenz Hauser
Keyword(s):  
Population Structure ◽  
Pacific Ocean ◽  
Isolation By Distance ◽  
Spatial Scales ◽  
Puget Sound ◽  
Pacific Cod ◽  
Genetic Population ◽  
Pacific Cod Gadus Macrocephalus ◽  
Gadus Macrocephalus ◽  
Northeastern Pacific

Genetic population structure of Pacific cod, Gadus macrocephalus , was examined across much of its northeastern Pacific range by screening variation at 11 microsatellite DNA loci. Estimates of FST (0.005 ± 0.002) and RST (0.010 ± 0.003) over all samples suggested that effective dispersal is limited among populations. Genetic divergence was highly correlated with geographic distance in an isolation-by-distance (IBD) pattern along the entire coastal continuum in the northeastern Pacific Ocean (~4000 km; r2 = 0.83), extending from Washington State to the Aleutian Islands, and over smaller geographic distances for three locations in Alaska (~1700 km; r2 = 0.56). Slopes of IBD regressions suggested average dispersal distance between birth and reproduction of less than 30 km. Exceptions to this pattern were found in samples taken from fjord environments in the Georgia Basin (the Strait of Georgia (Canada) and Puget Sound (USA)), where populations were differentiated from coastal cod. Our results showed population structure at spatial scales relevant to fisheries management, both caused by limited dispersal along the coast and by sharp barriers to migration isolating smaller stocks in coastal fjord environments.

The Rabbit in Subalpine South-eastern Australia. I. Population Structure and Productivity

1974 ◽  
Vol 1 (1) ◽  
pp. 1 ◽  
Author(s):  
DJ Dunsmore
Keyword(s):  
Population Structure ◽  
National Park ◽  
Initial Level ◽  
Adult Survival ◽  
South Eastern ◽  
Breeding Group ◽  
Eastern Australia ◽  
Domestic Livestock ◽  
A Site ◽  
Better Than

An unconfined, almost completely tagged rabbit population on a site of about 100 ha was studied by observation and trapping for 5 years. The commencement of the study coincided approximately with the incorporation of the area into the Kosciusko National Park, the elimination of grazing by domestic livestock, and the cessation of the previously almost annual burning of the area. During the 5-yr study the fecundity of the rabbits declined to little more than half the initial level. This was not a result of the concurrently increasing age of the population, which was shown to be quite unrelated. It was also shown that the 1yr old rabbits were less fecund than the older rabbits, whose fecundity remained constant. Although it appeared subjectively to be so, the area was not uniformly suitable for the survival of rabbits. In one of its four subdivisions adult survival was much better than in the others; and in one of the others it was much the worst. During the study there was considerable immigration to the area, presumably balanced by migration. Females tended to remain where they were born and in no case changed from one breeding group to another. Males were considerably less sedentary than the females.

A new species of long-eared bat (Nyctophilus: Vespertilionidae) from New Caledonia.

2001 ◽  
Vol 23 (2) ◽  
pp. 115 ◽  
Author(s):  
HE Parnaby
Keyword(s):  
New Species ◽  
New Caledonia ◽  
High Elevation ◽  
Large Series ◽  
Similar Species ◽  
Eastern Australia ◽  
A New Species

A new species of Nyctophilus is described on the basis of three specimens from the hinterland of Noum�a, New Caledonia. Comparisons are made with a large series of the most similar species, N. gouldi and N. bifax from eastern Australia, from which it differs on external, cranial, dental and penile morphology. The new species most resembles N. gouldi and its affinities appear to lie within the Australian fauna. An IUCN threat category of ?Vulnerable? is suggested due to a localised distribution in threatened high elevation rainforest.

scholarly journals Fine-Scale Population Structure but Limited Genetic Differentiation in a Cooperatively Breeding Paper Wasp

2020 ◽  
Vol 12 (5) ◽  
pp. 701-714 ◽  
Author(s):  
Sarah E Bluher ◽  
Sara E Miller ◽  
Michael J Sheehan
Keyword(s):  
Population Structure ◽  
Genetic Differentiation ◽  
Cooperative Breeding ◽  
Isolation By Distance ◽  
Spatial Scales ◽  
Paper Wasp ◽  
Paper Wasps ◽  
Natal Philopatry ◽  
Continental Scale ◽  
Cooperatively Breeding

Abstract Relatively little is known about the processes shaping population structure in cooperatively breeding insect species, despite the long-hypothesized importance of population structure in shaping patterns of cooperative breeding. Polistes paper wasps are primitively eusocial insects, with a cooperative breeding system in which females often found nests in cooperative associations. Prior mark-recapture studies of Polistes have documented extreme female philopatry, although genetic studies frequently fail to detect the strong population structure expected for highly philopatric species. Together these findings have led to lack of consensus on the degree of dispersal and population structure in these species. This study assessed population structure of female Polistes fuscatus wasps at three scales: within a single site, throughout Central New York, and across the Northeastern United States. Patterns of spatial genetic clustering and isolation by distance were observed in nuclear and mitochondrial genomes at the continental scale. Remarkably, population structure was evident even at fine spatial scales within a single collection site. However, P. fuscatus had low levels of genetic differentiation across long distances. These results suggest that P. fuscatus wasps may employ multiple dispersal strategies, including extreme natal philopatry as well as longer-distance dispersal. We observed greater genetic differentiation in mitochondrial genes than in the nuclear genome, indicative of increased dispersal distances in males. Our findings support the hypothesis that limited female dispersal contributes toward population structure in paper wasps.

scholarly journals Birds are islands for parasites

2014 ◽  
Vol 10 (8) ◽  
pp. 20140255 ◽  
Author(s):  
Jennifer A. H. Koop ◽  
Karen E. DeMatteo ◽  
Patricia G. Parker ◽  
Noah K. Whiteman
Keyword(s):  
Population Structure ◽  
Genetic Structure ◽  
Population Genetic Structure ◽  
Population Genetic ◽  
Evolutionary Biology ◽  
Isolation By Distance ◽  
Spatial Scales ◽  
Island Populations ◽  
Louse Species ◽  
Parasite Populations

Understanding the mechanisms driving the extraordinary diversification of parasites is a major challenge in evolutionary biology. Co-speciation, one proposed mechanism that could contribute to this diversity is hypothesized to result from allopatric co-divergence of host–parasite populations. We found that island populations of the Galápagos hawk ( Buteo galapagoensis ) and a parasitic feather louse species ( Degeeriella regalis ) exhibit patterns of co-divergence across variable temporal and spatial scales. Hawks and lice showed nearly identical population genetic structure across the Galápagos Islands. Hawk population genetic structure is explained by isolation by distance among islands. Louse population structure is best explained by hawk population structure, rather than isolation by distance per se , suggesting that lice tightly track the recent population histories of their hosts. Among hawk individuals, louse populations were also highly structured, suggesting that hosts serve as islands for parasites from an evolutionary perspective. Altogether, we found that host and parasite populations may have responded in the same manner to geographical isolation across spatial scales. Allopatric co-divergence is likely one important mechanism driving the diversification of parasites.

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