scholarly journals Agrobacterium rhizogenes—mediated transformation ofPisum sativumL. roots as a tool for studying the mycorrhizal and root nodule symbioses

PeerJ ◽  
2019 ◽  
Vol 7 ◽  
pp. e6552 ◽  
Author(s):  
Irina V. Leppyanen ◽  
Anna N. Kirienko ◽  
Elena A. Dolgikh
Keyword(s):  
Agrobacterium Rhizogenes ◽  
Rhizobium Leguminosarum ◽  
Fluorescent Protein ◽  
Arbuscular Mycorrhizal ◽  
Am Fungi ◽  
Symbiotic Association ◽  
Gene Encoding ◽  
Transgenic Roots ◽  
Pea Seedlings ◽  
Green Fluorescent

In this study, we demonstrated the successful transformation of two pea (Pisum sativumL.) cultivars usingAgrobacterium rhizogenes, whereby transgenic roots in the resulting composite plants showed expression of the gene encoding the green fluorescent protein. Subsequent to infection withA. rhizogenes, approximately 70%–80% of pea seedlings developed transgenic hairy roots. We found out that the transgenic roots can be efficiently nodulated byRhizobium leguminosarumbv.viciaeand infected by the arbuscular mycorrhizal (AM) fungusRhizophagus irregularis. The morphology of nodules in the transgenic roots was found to be identical to that of nodules observed in wild-type roots, and we also observed the effective induction of markers typical of the symbiotic association with AM fungi. The convenient protocol for highly efficientA. rhizogenes-mediated transformation developed in this study would be a rapid and effective tool for investigating those genes involved in the development of the two types of symbioses found in pea plants.

scholarly journals Agrobacterium rhizogenes Transformation of the Phaseolus spp.: A Tool for Functional Genomics

2006 ◽  
Vol 19 (12) ◽  
pp. 1385-1393 ◽  
Author(s):  
Georgina Estrada-Navarrete ◽  
Xochitl Alvarado-Affantranger ◽  
Juan-Elías Olivares ◽  
Claudia Díaz-Camino ◽  
Olivia Santana ◽  
...  
Keyword(s):  
Functional Genomics ◽  
Agrobacterium Rhizogenes ◽  
Fluorescent Protein ◽  
Phaseolus Vulgaris L ◽  
Rhizobium Tropici ◽  
Transgenic Roots ◽  
Root Transformation ◽  
Microbe Interactions ◽  
Wild Accessions ◽  
Green Fluorescent

A fast, reproducible, and efficient transformation procedure employing Agrobacterium rhizogenes was developed for Phaseolus vulgaris L. wild accessions, landraces, and cultivars and for three other species belonging to the genus Phaseolus: P. coccineus, P. lunatus, and P. acutifolius. Induced hairy roots are robust and grow quickly. The transformation frequency is between 75 and 90% based on the 35-S promoter-driven green fluorescent protein and β-glu-curonidase expression reporter constructs. When inoculated with Rhizobium tropici, transgenic roots induce normal determinate nodules that fix nitrogen as efficiently as inoculated standard roots. The A. rhizogenes-induced hairy root transformation in the genus Phaseolus sets the foundation for functional genomics programs focused on root physiology, root metabolism, and root–microbe interactions.

scholarly journals Erl1, a Novel Era-Like GTPase from Magnaporthe oryzae, Is Required for Full Root Virulence and Is Conserved in the Mutualistic Symbiont Glomus intraradices

2010 ◽  
Vol 23 (1) ◽  
pp. 67-81 ◽  
Author(s):  
Stephanie Heupel ◽  
Birgit Roser ◽  
Hannah Kuhn ◽  
Marc-Henri Lebrun ◽  
Francois Villalba ◽  
...  
Keyword(s):  
Magnaporthe Oryzae ◽  
Glomus Intraradices ◽  
Fluorescent Protein ◽  
Arbuscular Mycorrhizal ◽  
Hyphal Growth ◽  
In Planta ◽  
Gene Encoding ◽  
Amino Terminal ◽  
In The Wild ◽  
Green Fluorescent

Comparative analyses of genome sequences from several plant-infecting fungi have shown conservation and expansion of protein families with plant disease-related functions. Here, we show that this hypothesis can be extended to mutualistic symbiotic fungi. We have identified a gene encoding an Era (Escherichia coli Ras)-like GTPase in the rice blast fungus Magnaporthe oryzae and found that it is orthologous to the mature amino terminal part of the Gin1 protein from the arbuscular mycorrhizal (AM) fungus Glomus intraradices. M. oryzae Erl1 is required for full root virulence. Appressoria formation was not severely affected in Δerl1 strains, but invasive hyphae grew slower than in the wild type. Root browning defect of Δerl1 strains could be complemented by the AM gene under the control of the ERL1 promoter. Erl1 and Gin-N localized to the nucleus when carboxy-terminally labeled with green fluorescent protein (GFP). However, amino-terminal GFP-tagged versions of the proteins expressed in Aspergillus nidulans were shown to localize in the cytoplasm and to cause polarity defects. These data suggest that Erl1 and Gin-N are orthologs and might be involved in the control of hyphal growth in planta. This is the first characterization of an Era-like GTPase in filamentous fungi.

Recruitment of the LIM protein hic-5 to focal contacts of human platelets

1998 ◽  
Vol 111 (15) ◽  
pp. 2181-2188 ◽  
Author(s):  
J. Hagmann ◽  
M. Grob ◽  
A. Welman ◽  
G. van Willigen ◽  
M.M. Burger
Keyword(s):  
Fluorescent Protein ◽  
Human Platelets ◽  
Gene Encoding ◽  
Chain Reactions ◽  
Amino Terminal ◽  
Culture Cells ◽  
Lim Domains ◽  
Focal Contacts ◽  
Green Fluorescent ◽  
Carboxy Terminal

Platelets are anuclear, membrane-bounded fragments derived from megakaryocytes which, upon stimulation, assemble an actin skeleton including stress fibres and focal contacts. The focal contacts resemble those of tissue culture cells. However, they lack paxillin, a conspicuous component of these organelles. We found that instead of paxillin, platelets contain a related protein with a molecular mass of 55 kDa that crossreacts with a monoclonal antibody against paxillin. The gene for the 55 kDa protein was cloned from a bone marrow cDNA library and turned out to be identical to a recently discovered gene encoding hic-5. Like paxillin, hic-5 is a cytoskeletal protein containing four carboxy-terminal LIM domains and LD motifs in the amino-terminal half. The LIM domains of both hic-5 and paxillin are capable of targetting green fluorescent protein to focal contacts. In addition, GST-hic-5 precipitates the focal adhesion kinase pp125(FAK) and talin from platelet extracts. Only trace amounts of hic-5 occur in DAMI cells, a megakaryocytic cell line, and in megakaryocytes cultured from CD34+ cells obtained from umbilical cord blood. However, RT-polymerase chain reactions performed with RNA obtained from platelets gave a positive result when primers specific for hic-5 were used, but were negative with paxillin-specific primers, indicating that a switch from paxillin expression to hic-5 expression must occur late in the maturation of megakaryocytes into platelets.

scholarly journals Combined Transcriptome Profiling Reveals a Novel Family of Arbuscular Mycorrhizal-Specific Medicago truncatula Lectin Genes

2005 ◽  
Vol 18 (8) ◽  
pp. 771-782 ◽  
Author(s):  
André Frenzel ◽  
Katja Manthey ◽  
Andreas M. Perlick ◽  
Folker Meyer ◽  
Alfred Pühler ◽  
...  
Keyword(s):  
Cdna Library ◽  
Medicago Truncatula ◽  
Arbuscular Mycorrhizal ◽  
Am Fungi ◽  
Host Cells ◽  
Genomic Research ◽  
Cdna Libraries ◽  
Specific Expression ◽  
Transgenic Roots ◽  
Lectin Genes

The large majority of plants are capable of undergoing a tight symbiosis with arbuscular mycorrhizal (AM) fungi. During this symbiosis, highly specialized new structures called arbuscules are formed within the host cells, indicating that, during interaction with AM fungi, plants express AM-specific genetic programs. Despite increasing efforts, the number of genes known to be induced in the AM symbiosis is still low. In order to identify novel AM-induced genes which have not been listed before, 5,646 expressed sequence tags (ESTs) were generated from two Medicago truncatula cDNA libraries: a random cDNA library (MtAmp) and a suppression subtractive hybridization (SSH) library (MtGim), the latter being designed to enhance the cloning of mycorrhiza-upregulated genes. In silico expression analysis was applied to identify those tentative consensus sequences (TCs) of The Institute for Genomic Research M. truncatula gene index (MtGI) that are composed exclusively of ESTs deriving from the MtGim or MtAmp library, but not from any other cDNA library of the MtGI. This search revealed 115 MtAmp- or MTGim-specific TCs. For the majority of these TCs with sequence similarities to plant genes, the AM-specific expression was verified by quantitative reverse-transcription polymerase chain reaction. Annotation of the novel genes induced in mycorrhizal roots suggested their involvement in different transport as well as signaling processes and revealed a novel family of AM-specific lectin genes. The expression of reporter gene fusions in transgenic roots revealed an arbuscule-related expression of two members of the lectin gene family, indicating a role for AM-specific lectins during arbuscule formation or functioning.

scholarly journals Mitochondrial localization of Dictyostelium discoideum dUTPase mediated by its N-terminus

2020 ◽  
Vol 13 (1) ◽  
Author(s):  
Catherine P. Chia ◽  
Noriko Inoguchi ◽  
Kyle C. Varon ◽  
Bradley M. Bartholomai ◽  
Hideaki Moriyama
Keyword(s):  
Dictyostelium Discoideum ◽  
Active Sites ◽  
Fluorescent Protein ◽  
Subcellular Fractionation ◽  
Unicellular Eukaryote ◽  
Gene Encoding ◽  
Conserved Motifs ◽  
N Terminus ◽  
Key Enzyme ◽  
Green Fluorescent

Abstract Objective The nuclear and mitochondrial genomes of Dictyostelium discoideum, a unicellular eukaryote, have relatively high A+T-contents of 77.5% and 72.65%, respectively. To begin to investigate how the pyrimidine biosynthetic pathway fulfills the demand for dTTP, we determined the catalytic properties and structure of the key enzyme deoxyuridine triphosphate nucleotidohydrolase (dUTPase) that hydrolyzes dUTP to dUMP, the precursor of dTTP. Results The annotated genome of D. discoideum identifies a gene encoding a polypeptide containing the five conserved motifs of homotrimeric dUTPases. Recombinant proteins, comprised of either full-length or core polypeptides with all conserved motifs but lacking residues 1-37 of the N-terminus, were active dUTPases. Crystallographic analyses of the core enzyme indicated that the C-termini, normally flexible, were constrained by interactions with the shortened N-termini that arose from the loss of residues 1-37. This allowed greater access of dUTP to active sites, resulting in enhanced catalytic parameters. A tagged protein comprised of the N-terminal forty amino acids of dUTPase fused to green fluorescent protein (GFP) was expressed in D. discoideum cells. Supporting a prediction of mitochondrial targeting information within the N-terminus, localization and subcellular fractionation studies showed GFP to be in mitochondria. N-terminal sequencing of immunoprecipitated GFP revealed the loss of the dUTPase sequence upon import into the organelle.

scholarly journals Use of a Recombinant Fluorescent Substrate with Cleavage Sites for All Botulinum Neurotoxins in High-Throughput Screening of Natural Product Extracts for Inhibitors of Serotypes A, B, and E

2007 ◽  
Vol 74 (3) ◽  
pp. 653-659 ◽  
Author(s):  
Harry B. Hines ◽  
Alexander D. Kim ◽  
Robert G. Stafford ◽  
Shirin S. Badie ◽  
Ernst E. Brueggeman ◽  
...  
Keyword(s):  
Natural Product ◽  
High Throughput Screening ◽  
Fluorescent Protein ◽  
Sulfhydryl Group ◽  
Cleavage Sites ◽  
Gene Encoding ◽  
Fluorescent Substrate ◽  
C Terminus ◽  
Protease Cleavage Sites ◽  
Green Fluorescent

ABSTRACT The seven serotypes of botulinum neurotoxin (BoNTs) are zinc metalloproteases that cleave and inactivate proteins critical for neurotransmission. The synaptosomal protein of 25 kDa (SNAP-25) is cleaved by BoNTs A, C, and E, while vesicle-associated membrane protein (VAMP) is the substrate for BoNTs B, D, F, and G. BoNTs not only are medically useful drugs but also are potential bioterrorist and biowarfare threat agents. Because BoNT protease activity is required for toxicity, inhibitors of that activity might be effective for antibotulinum therapy. To expedite inhibitor discovery, we constructed a hybrid gene encoding (from the N terminus to the C terminus, with respect to the expressed product) green fluorescent protein, then a SNAP-25 fragment encompassing residues Met-127 to Gly-206, and then VAMP residues Met-1 to Lys-94. Cysteine was added as the C terminus. The expressed product, which contained the protease cleavage sites for all seven botulinum serotypes, was purified and coupled covalently through the C-terminal sulfhydryl group to maleimide-activated 96-well plates. The substrate was readily cleaved by BoNTs A, B, D, E, and F. Using this assay and an automated 96-well pipettor, we screened 528 natural product extracts for inhibitors of BoNT A, B, and E protease activities. Serotype-specific inhibition was found in 30 extracts, while 5 others inhibited two serotypes.

scholarly journals Microplate Bioassay for Nisin in Foods, Based on Nisin-Induced Green Fluorescent Protein Fluorescence

2003 ◽  
Vol 69 (7) ◽  
pp. 4214-4218 ◽  
Author(s):  
J. Reunanen ◽  
P. E. J. Saris
Keyword(s):  
Green Fluorescent Protein ◽  
Lactococcus Lactis ◽  
Culture Supernatant ◽  
Fluorescent Protein ◽  
Green Fluorescent Protein Fluorescence ◽  
Regulatory Proteins ◽  
Protein Fluorescence ◽  
Gene Encoding ◽  
Two Component ◽  
Green Fluorescent

ABSTRACT A plasmid coding for the nisin two-component regulatory proteins, NisK and NisR, was constructed; in this plasmid a gfp gene (encoding the green fluorescent protein) was placed under control of the nisin-inducible nisF promoter. The plasmid was transformed into non-nisin-producing Lactococcus lactis strain MG1614. The new strain could sense extracellular nisin and transduce it to green fluorescent protein fluorescence. The amount of fluorescence was dependent on the nisin concentration, and it could be measured easily. By using this strain, an assay for quantification of nisin was developed. With this method it was possible to measure as little as 2.5 ng of pure nisin per ml in culture supernatant, 45 ng of nisin per ml in milk, 0.9 μg of nisin in cheese, and 1 μg of nisin per ml in salad dressings.

scholarly journals Identification and Characterization of a Novel Gene Involved in the trans-Specific Nematicidal Activity of Photorhabdus luminescens LN2

2009 ◽  
Vol 75 (12) ◽  
pp. 4221-4223 ◽  
Author(s):  
Xuehong Qiu ◽  
Richou Han ◽  
Xun Yan ◽  
Mingxing Liu ◽  
Li Cao ◽  
...  
Keyword(s):  
Green Fluorescent Protein ◽  
Fluorescent Protein ◽  
Transposon Mutagenesis ◽  
Nematicidal Activity ◽  
Photorhabdus Luminescens ◽  
Gene Encoding ◽  
Heterorhabditis Indica ◽  
Green Fluorescent ◽  
Identification And Characterization

ABSTRACT Photorhabdus luminescens subsp. akhurstii LN2 from Heterorhabditis indica LN2 showed nematicidal activity against axenic Heterorhabditis bacteriophora H06 infective juveniles (IJs). Transposon mutagenesis identified an LN2 mutant that supports the growth of H06 nematodes. Tn5 disrupted the namA gene, encoding a novel 364-residue protein and involving the nematicidal activity. The green fluorescent protein-labeled namA mutant was unable to colonize the intestines of H06 IJs.

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