scholarly journals Integrated bioinformatics analysis of As, Au, Cd, Pb and Cu heavy metal responsive marker genes through Arabidopsis thaliana GEO datasets

PeerJ ◽  
2019 ◽  
Vol 7 ◽  
pp. e6495 ◽  
Author(s):  
Chao Niu ◽  
Min Jiang ◽  
Na Li ◽  
Jianguo Cao ◽  
Meifang Hou ◽  
...  
Keyword(s):  
Heavy Metals ◽  
Heavy Metal ◽  
Stress Responses ◽  
Large Scale ◽  
Molecular Mechanisms ◽  
Bioinformatics Analysis ◽  
Kegg Pathway ◽  
Marker Genes ◽  
Bioinformatics Analyses ◽  
Soil And Water

Background Current environmental pollution factors, particularly the distribution and diffusion of heavy metals in soil and water, are a high risk to local environments and humans. Despite striking advances in methods to detect contaminants by a variety of chemical and physical solutions, these methods have inherent limitations such as small dimensions and very low coverage. Therefore, identifying novel contaminant biomarkers are urgently needed. Methods To better track heavy metal contaminations in soil and water, integrated bioinformatics analysis to identify biomarkers of relevant heavy metal, such as As, Cd, Pb and Cu, is a suitable method for long-term and large-scale surveys of such heavy metal pollutants. Subsequently, the accuracy and stability of the results screened were experimentally validated by quantitative PCR experiment. Results We obtained 168 differentially expressed genes (DEGs) which contained 59 up-regulated genes and 109 down-regulated genes through comparative bioinformatics analyses. Subsequently, the gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichments of these DEGs were performed, respectively. GO analyses found that these DEGs were mainly related to responses to chemicals, responses to stimulus, responses to stress, responses to abiotic stimulus, and so on. KEGG pathway analyses of DEGs were mainly involved in the protein degradation process and other biologic process, such as the phenylpropanoid biosynthesis pathways and nitrogen metabolism. Moreover, we also speculated that nine candidate core biomarker genes (namely, NILR1, PGPS1, WRKY33, BCS1, AR781, CYP81D8, NR1, EAP1 and MYB15) might be tightly correlated with the response or transport of heavy metals. Finally, experimental results displayed that these genes had the same expression trend response to different stresses as mentioned above (Cd, Pb and Cu) and no mentioned above (Zn and Cr). Conclusion In general, the identified biomarker genes could help us understand the potential molecular mechanisms or signaling pathways responsive to heavy metal stress in plants, and could be applied as marker genes to track heavy metal pollution in soil and water through detecting their expression in plants growing in those environments.

scholarly journals Estimation of the Concentration of Some Heavy Metals in Groundwater in Rutba City

2021 ◽  
Vol 904 (1) ◽  
pp. 012009
Author(s):  
A W Abd Byty ◽  
M A Gharbi ◽  
A H Assaf
Keyword(s):  
Heavy Metals ◽  
Heavy Metal ◽  
Metal Ions ◽  
Heavy Metal Ions ◽  
Large Scale ◽  
Toxic Metal ◽  
Scale Production ◽  
Future Health ◽  
Distribution Maps ◽  
Guideline Values

Abstract Toxic metal pollutants in groundwater should be identified to prevent future health risks. In this paper, the presence of heavy metals in groundwater in the western region of Iraq was investigated. The heavy metals concentrations, including Ni2+, Co2+, Zn2+, Pb2+, Cr3+, Cd2+, As3+ and Hg2+ were explored in twenty selected aquifers near Rutba City and the results were presented as spatial distribution maps. Findings indicate that contamination with the investigated heavy metal ions possesses a serious threat to the study area’s groundwater quality when compared to WHO and IEPA guideline values. Thus, a new approach to remove or adsorb heavy metal ions can be developed for large-scale production and the safe use of these aquifers water. Results revealed that the highest concentrations in mg/L1 of 2.312 in w19, 1.098 in w2, 5.78 in w17, 0.292 in w9, 3.349 in w5, 0.32 in w13, 0.074 in w11 and 5.622 in w1 for Zn2+, Cr3+, As3+, Pb2+, Ni2+, Co2+, Cd2+ and Hg2+ were recorded, respectively.

scholarly journals Scope and future perspectives of phytoremediation

2021 ◽  
Vol 16 (AAEBSSD) ◽  
pp. 77-85
Author(s):  
Sridevi Tallapragada ◽  
Rajesh Lather ◽  
Vandana ◽  
Gurnam Singh
Keyword(s):  
Heavy Metals ◽  
Heavy Metal ◽  
Genetic Engineering ◽  
Plant Growth ◽  
Mycorrhizal Fungi ◽  
Large Scale ◽  
Negative Impact ◽  
Heavy Metal Accumulation ◽  
Plant Growth Promoting Bacteria ◽  
Runoff Water

Phytoremediation is the plant-based technology that has emerged as a novel cost effective and ecofriendly technology in which green plants are used for extraction, sequestration and/or detoxification of the pollutants. Plants possess the natural ability to degrade heavy metals and this property of plants to detoxify contaminants can be used by genetic engineering approach. Currently, the quality of soil and water has degraded considerably due heavy metal accumulation through discharge of industrial, agricultural and domestic waste. Heavy metal pollution is a global concern and a major health threat worldwide. They are toxic, and can damage living organisms even at low concentrations and tend to accumulate in the food chain. The most common heavy metal contaminants are: As, Cd, Cr, Cu, Hg, Pb and Zn. High levels of metals in soil can be phytotoxic, leading to poor plant growth and soil cover due to metal toxicity and can lead to metal mobilization in runoff water and thus have a negative impact on the whole ecosystem. Phytoremediation is a green strategy that uses hyperaccumulator plants and their rhizospheric micro-organisms to stabilize, transfer or degrade pollutants in soil, water and environment. Mechanisms used to remediate contaminated soil includes phytoextraction, phytostabilization, phytotransformation, phytostimulation, phytovolatilization and rhizofiltration. Traditional phytoremediation method presents some limitations regarding their applications at large scale, so the application of genetic engineering approaches such as transgenic transformation, nanoparticles addition and phytoremediation assisted with phytohormones, plant growth-promoting bacteria and Arbuscular mycorrhizal fungi (AMF) inoculation has been applied to ameliorate the efficacy of plants for heavy metals decontamination. In this review, some recent innovative technologies for improving phytoremediation and heavy metals toxicity and their depollution procedures are highlighted.

scholarly journals A review: Analytical methods for heavy metals determination in environment and human samples

2019 ◽  
pp. 97-126 ◽  
Author(s):  
Mojtaba Arjomandi ◽  
*Hamid Shirkhanloo
Keyword(s):  
Heavy Metals ◽  
Heavy Metal ◽  
Human Health ◽  
Human Body ◽  
Analytical Methods ◽  
Review Paper ◽  
Clinical Chemistry ◽  
Daily Lives ◽  
Soil And Water

Heavy metals are vital and necessary in our daily lives. Moreover, if the amounts of heavy metals are more than the acceptable amounts (mentioned by WHO) in soil, water, and air, indeed, they cause a lot of diseases in human bodies. Therefore, monitoring and measuring the amounts of heavy metals that are arduous and difficult are so important. In this review paper, a lot of studies that have been carried out on the determination and quantification of heavy metals in human bodies, soil, and water are considered. Moreover, the effect of toxicity of each heavy metal on human health is assessed. According to WHO, EPA, NIOSH, ACGIH, and clinical chemistry, the determination of heavy metals such as Cd, Pb, Zn, Hg, Cu, Mn is very important in the human body and Environmental matrixes. 

scholarly journals The Potential of Microbial Fuel Cells for Remediation of Heavy Metals from Soil and Water—Review of Application

2019 ◽  
Vol 7 (12) ◽  
pp. 697 ◽  
Author(s):  
Chaolin Fang ◽  
Varenyam Achal
Keyword(s):  
Heavy Metals ◽  
Heavy Metal ◽  
Microbial Fuel Cells ◽  
Electrode Materials ◽  
Metal Removal ◽  
Heavy Metal Removal ◽  
External Energy ◽  
Microbial Electrolysis Cells ◽  
Cadmium And Lead ◽  
Soil And Water

The global energy crisis and heavy metal pollution are the common problems of the world. It is noted that the microbial fuel cell (MFC) has been developed as a promising technique for sustainable energy production and simultaneously coupled with the remediation of heavy metals from water and soil. This paper reviewed the performances of MFCs for heavy metal removal from soil and water. Electrochemical and microbial biocatalytic reactions synergistically resulted in power generation and the high removal efficiencies of several heavy metals in wastewater, such as copper, hexavalent chromium, mercury, silver, thallium. The coupling system of MFCs and microbial electrolysis cells (MECs) successfully reduced cadmium and lead without external energy input. Moreover, the effects of pH and electrode materials on the MFCs in water were discussed. In addition, the remediation of heavy metal-contaminated soil by MFCs were summarized, noting that plant-MFC performed very well in the heavy metal removal.

scholarly journals Phytoremediation of Heavy Metals Extracted from Soil and Aquatic Environments: Current Advances as well as Emerging Trends

2021 ◽  
Vol 12 (4) ◽  
pp. 5486-5509
Keyword(s):  
Heavy Metals ◽  
Heavy Metal ◽  
Metal Contamination ◽  
Industrial Development ◽  
Heavy Metal Contamination ◽  
Cost Effective ◽  
Aquatic Environments ◽  
Farming Practices ◽  
Emerging Trends ◽  
Soil And Water

Quick industrial development, current farming practices, and other anthropogenic events enhance an important number of poisonous heavy metals in the atmosphere, which persuades severe poisonous effect on all the forms of living beings, which change the properties. This type of heavy metal pollution has ecological dangers as well as affects human health. Heavy metal contamination is mutagenic, endocrine, carcinogenic, and teratogenic, which causes nervous health problems mostly in kids. Further, an appropriate method for the remediation of adulteration of water along with soil is phytoremediation. In addition, it has been progressively utilized. Phytoremediation helps to improve the contaminated soil and water by the extraction of contaminating heavy metals, which is called phytoextraction and their phytostabilisation. Phytoremediation is based on many processes, and it is very eco-friendly, cost-effective, and economical. In this review, we aim to explain the detailed study of phytoremediation and current approaches.

Complete genome sequencing and comparative genomic analyses of Bacillus sp. S3, a novel hyper Sb(III)-oxidizing bacterium

2020 ◽  
Author(s):  
Jiaokun Li ◽  
Tianyuan Gu ◽  
Weimin Zeng ◽  
Runlan Yu ◽  
Yuandong Liu ◽  
...  
Keyword(s):  
Heavy Metal ◽  
Resistance Genes ◽  
Complete Genome ◽  
Large Scale ◽  
Molecular Mechanisms ◽  
Evolutionary Relationship ◽  
Gc Content ◽  
Comparative Genomic ◽  
Bacillus Sp ◽  
Bacillus Genus

Abstract Background: Antimonite [Sb(III)]-oxidizing bacterium has great potential in the environmental bioremediation of Sb-polluted sites. Bacillus sp. S3 that was previously isolated from antimony-contaminated soil displayed high Sb(III) resistance and Sb(III) oxidation efficiency. However, the genomic information and evolutionary feature of Bacillus sp. S3 are very scarce. Results: Here, we identified a 5,579,638 bp chromosome with 40.30% GC content and a 241,339 bp plasmid with 36.74% GC content in the complete genome of Bacillus sp. S3. Genomic annotation showed that Bacillus sp. S3 contained a key aioB gene potentially encoding As(III)/Sb(III) oxidase, which was not shared with other Bacillus strains. Further, a series of genes associated with Sb(III) and other heavy metal(loid)s were also ascertained in Bacillus sp. S3, reflecting its adaptive advantage for growth in the harsh eco-environment. Based on the analysis of phylogenetic relationship and the average nucleotide identities (ANI), we found that Bacillus sp. S3 was a novel species within the Bacillus genus. The majority of mobile genetic elements (MGEs) mainly distributed on chromosomes within the Bacillus genus. Pan-genome analysis showed that the 45 genomes contained 554 core genes and many unique genes were dissected in analyzed genomes. Whole genomic alignment showed that Bacillus genus underwent frequently large-scale evolutionary events. In addition, the origin and evolution analysis of Sb(III)-resistance genes revealed that evolutionary relationships and horizontal gene transfer (HGT) events among the Bacillus genus. The assessment of functionality of heavy metal(loid)s resistance genes emphasized its indispensable roles in the harsh eco-environment of Bacillus genus. The real-time Quantitative PCR (RT-qPCR) results of Sb(III)-related genes indicated that the Sb(III) resistance was constantly increased under the Sb(III) stress. Conclusions: The results in this study shed light on the molecular mechanisms of Bacillus sp. S3 coping with Sb(III), extended our understanding on the evolutionary relationship between Bacillus sp. S3 and other closely related species, and further enriched the Sb(III) resistance genetic data sources.

HEAVY METALS IN FOOD CROPS: IDEAL SOURCES AND ROLES OF URBAN AGRICULTURE IN FACILITATING THEIR CONSUMPTION- A REVIEW

2021 ◽  
Vol 5 (2) ◽  
pp. 34-45
Author(s):  
N. Abdullahi ◽  
E. C Igwe ◽  
M. A. Dandago ◽  
N. B. Umar
Keyword(s):  
Heavy Metals ◽  
Heavy Metal ◽  
Urban Areas ◽  
Agricultural Soil ◽  
Heavy Metal Contamination ◽  
Anthropogenic Activities ◽  
Wastewater Irrigation ◽  
Food Crops ◽  
Urban Food Production ◽  
Soil And Water

The qualities of agricultural soil and water are diminishing continuously due to the rigorous anthropogenic activities currently stocking the soil with a lot of toxic chemicals including heavy metals. Heavy metals are highly persistent and non-biodegradable, control of their contamination is very tricky to handle. Their presence in soil and water is detrimental to food crops and humans. Various sources of heavy metals contaminants and the role of urban food production on human heavy metal contamination were discussed.Heavy metals have their way into the soil and food crops through wastewater irrigation and production in contaminated soil. The habitual heavy metals contamination sources for food crops are wastewater irrigation, abuse of agrochemicals, production in the contaminated field, atmospheric deposit when foods are exposed to contaminated air, and unethical mining activities. Agricultural soil in urban and peri-urban areas are heavily contaminated with heavy metal due to various anthropogenic activities. Wastewater irrigation intensify the contamination by supplying the soil with more heavy metals. The heavy metals are passed to food during production and subsequently to humans after consumption.

scholarly journals Biosorption and Bioaccumulation Abilities of Actinomycetes/Streptomycetes Isolated from Metal Contaminated Sites

Separations ◽  
2018 ◽  
Vol 5 (4) ◽  
pp. 54 ◽  
Author(s):  
Ivana Timková ◽  
Jana Sedláková-Kaduková ◽  
Peter Pristaš
Keyword(s):  
Heavy Metals ◽  
Heavy Metal ◽  
Metal Ion ◽  
Polluted Soil ◽  
Negative Effects ◽  
Wide Range ◽  
Specific Uptake ◽  
High Concentrations ◽  
Further Development ◽  
Soil And Water

Heavy metal pollution is of great concern. Due to expansion of industrial activities, a large amount of metal is released into the environment, disturbing its fragile balance. Conventional methods of remediation of heavy metal-polluted soil and water are expensive and inefficient. Therefore, new techniques are needed to provide environmentally friendly and highly selective remediation. Streptomycetes, with their unique growth characteristics, ability to form spores and mycelia, and relatively rapid colonization of substrates, act as suitable agents for bioremediation of metals and organic compounds in polluted soil and water. A variety of mechanisms could be involved in reduction of metals in the environment, e.g., sorption to exopolymers, precipitation, biosorption and bioaccumulation. Studies performed on biosorption and bioaccumulation potential of streptomycetes could be used as a basis for further development in this field. Streptomycetes are of interest because of their ability to survive in environments contaminated by metals through the production of a wide range of metal ion chelators, such as siderophores, which provide protection from the negative effects of heavy metals or specific uptake for specialized metabolic processes. Many strains also have the equally important characteristic of resistance to high concentrations of heavy metals.

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