scholarly journals Multilocus molecular systematics of the circumtropical reef-fish genus Abudefduf (Pomacentridae): history, geography and ecology of speciation

PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e5357 ◽  
Author(s):  
Matthew A. Campbell ◽  
D. Ross Robertson ◽  
Marta I. Vargas ◽  
Gerald R. Allen ◽  
W.O. McMillan
Keyword(s):  
Sea Level ◽  
Trophic Ecology ◽  
Widespread Species ◽  
Geographic Ranges ◽  
Root Cause ◽  
The Pacific ◽  
Major Species ◽  
Major Variation ◽  
Parapatric Speciation ◽  
Bayesian Phylogeny

We investigated a pantropical sub-family and genus of damselfishes, the sergeant-majors (Pomacentridae: Abudefdufinae: Abudefduf), to identify the tempo and mechanisms of speciation in the lineage. We examined sequence capture data from 500 loci and 20 species, with multiple individuals sampled from across the geographic ranges of widespread species. Utilizing a maximum likelihood framework, as well as a time-calibrated Bayesian phylogeny, the following key questions are addressed: What is the historical tempo of speciation? What are the relative contributions of vicariant, peripatric and parapatric speciation to sergeant-major diversity? How is speciation related to major variation in trophic ecology? The approximately 20 species of sergeant-majors fall into three main lineages. The ancestral condition appears to be benthivory, which is predominant in two lineages comprising six species. The remaining species of sergeant-majors, of which there are at least 15, fall within a clade composed entirely of planktivores. This clade is sister to a benthivore clade that included one species, Abudefduf notatus, in transition to planktivory. Most speciation of sergeant-majors, which appeared ∼24 million years ago, occurred in the last 10 million years. Present distributional patterns indicate vicariant speciation precipitated by the closure of land barriers between both sides of the Atlantic and the Pacific, and the emergence of land between the Indian and Pacific Oceans. Within this backdrop, frequent oscillations in sea level over the last 10 million years also appear to have generated conditions suitable for both peripatric and vicariant speciation, and most speciation within the genus appears linked to these changes in sea level. Diversification within the genus has been concentrated in planktivorous seargeant-majors rather than benthivores. The root cause is unclear, but does not appear to be related to differences in dispersal potential, which is greater in the planktivorous species, due to the ability of their post-larval juveniles to raft with floating debris. This elevated speciation rate in planktivores and their propensity to form local endemics may reflect relaxation of selective pressures (e.g., on crypticity) that limit speciation in benthivorous sergeant-majors. Finally, our data allow us to clarify relationships of geminate sergeant-major species, indicating that there are subdivisions within the Atlantic for both benthivore and planktivore geminate pairs that may have misled previous studies.

Marine tube-dwelling diatoms of the Pacific coast of North America. I. Berkeleya, Haslea, Nitzschia, and Navicula sect. Microstigmaticae

1985 ◽  
Vol 63 (10) ◽  
pp. 1779-1784 ◽  
Author(s):  
Christopher S. Lobban
Keyword(s):  
Los Angeles ◽  
Pacific Coast ◽  
The United States ◽  
Aleutian Islands ◽  
Geographic Ranges ◽  
Tube Forming ◽  
Point Conception ◽  
The Pacific ◽  
Major Species ◽  
Water Species

Species of marine tube-dwelling diatoms have been identified from fresh collections made along the Pacific coast of the United States and from herbarium material originating from the Aleutian Islands to Baja California. The major species have three geographic ranges. Berkeleya rutilans is common throughout the region. Navicula pseudocomoides is common as far south as Point Conception (as are one or more species of Navicula sect. Lineolatae, not treated here). Less common in this region is Navicula delognei. Nitzschia fontifuga was found as a sporadic cohabitant of tube-forming species, especially B. rutilans. Berkeleya hyalina is a warm-water species, extending as far north as Los Angeles. Rarer tube-forming species include Haslea crucigera, Berkeleya fragilis, and B. micans.

Projected sea-level changes in the marginal seas near China based on dynamical downscaling

2021 ◽  
pp. 1-52
Author(s):  
Yi Jin ◽  
Xuebin Zhang ◽  
John A. Church ◽  
Xianwen Bao
Keyword(s):  
Climate Change ◽  
Sea Level ◽  
Climate Models ◽  
Dynamical Downscaling ◽  
Global Climate Models ◽  
Open Boundary ◽  
Open Boundary Conditions ◽  
Sea Level Changes ◽  
Marginal Seas ◽  
The Pacific

AbstractProjections of future sea-level changes are usually based on global climate models (GCMs). However, the changes in shallow coastal regions, like the marginal seas near China, cannot be fully resolved in GCMs. To improve regional sea-level simulations, a high-resolution (~8 km) regional ocean model is set up for the marginal seas near China for both the historical (1994-2015) and future (2079-2100) periods under representative concentration pathways (RCPs) 4.5 and 8.5. The historical ocean simulations are evaluated at different spatiotemporal scales, and the model is then integrated for the future period, driven by projected monthly climatological climate change signals from 8 GCMs individually via both surface and open boundary conditions. The downscaled ocean changes derived by comparing historical and future experiments reveal greater spatial details than those from GCMs, e.g., a low dynamic sea level (DSL) centre of -0.15 m in the middle of the South China Sea (SCS). As a novel test, the downscaled results driven by the ensemble mean forcings are almost identical with the ensemble average results from individually downscaled cases. Forcing of the DSL change and increased cyclonic circulation in the SCS are dominated by the climate change signals from the Pacific, while the DSL change in the East China marginal seas is caused by both local atmosphere forcing and signals from the Pacific. The method of downscaling developed in this study is a useful modelling protocol for adaptation and mitigation planning for future oceanic climate changes.

scholarly journals MIS 5e sea-level history along the Pacific Coast of North America

2021 ◽  
Author(s):  
Daniel R. Muhs
Keyword(s):  
North America ◽  
Sea Level ◽  
Baja California ◽  
Pacific Coast ◽  
Level Indicator ◽  
Sequence Of Events ◽  
Marine Terraces ◽  
The Pacific ◽  
Mis 5E ◽  
Good Agreement

Abstract. The primary last interglacial, marine isotope substage (MIS) 5e records on the Pacific Coast of North America, from Washington (USA) to Baja California Sur (Mexico), are found in the deposits of erosional marine terraces. Warmer coasts along the southern Golfo de California host both erosional marine terraces and constructional coral reef terraces. Because the northern part of the region is tectonically active, MIS 5e terrace elevations vary considerably, from a few meters above sea level to as much as 70 m above sea level. The primary paleo-sea level indicator is the shoreline angle, the junction of the wave-cut platform with the former sea cliff, which forms very close to mean sea level. Most areas on the Pacific Coast of North America have experienced uplift since MIS 5e time, but the rate of uplift varies substantially as a function of tectonic setting. Chronology in most places is based on uranium-series ages of the solitary coral Balanophyllia elegans (erosional terraces) or the colonial corals Porites and Pocillopora (constructional reefs). In areas lacking corals, correlation to MIS 5e can sometimes be accomplished using amino acid ratios of fossil mollusks, compared to similar ratios in mollusks that also host dated corals. U-series analyses of corals that have experienced largely closed-system histories range from ~124 to ~118 ka, in good agreement with ages from MIS 5e reef terraces elsewhere in the world. There is no geomorphic, stratigraphic, or geochronology evidence for more than one high-sea stand during MIS 5e on the Pacific Coast of North America. However, in areas of low uplift rate, the outer parts of MIS 5e terraces apparently were re-occupied by the high-sea stand at ~100 ka (MIS 5c), evident from mixes of coral ages and mixes of molluscan faunas with differing thermal aspects. This sequence of events took place because glacial isostatic adjustment processes acting on North America resulted in regional high-sea stands at ~100 ka and ~80 ka that were higher than is the case in far-field regions, distant from large continental ice sheets. During MIS 5e time, sea surface temperatures (SST) off the Pacific Coast of North America were higher than is the case at present, evident from extralimital southern species of mollusks found in dated deposits. Apparently no wholesale shifts in faunal provinces took place, but in MIS 5e time, some species of bivalves and gastropods lived hundreds of kilometers north of their present northern limits, in good agreement with SST estimates derived from foraminiferal records and alkenone-based reconstructions in deep-sea cores. Because many areas of the Pacific Coast of North America have been active tectonically for much or all of the Quaternary, many earlier interglacial periods are recorded as uplifted, higher elevation terraces. In addition, from southern Oregon to northern Baja California, there are U-series-dated corals from marine terraces that formed ~80 ka, during MIS 5a. In contrast to MIS 5e, these terrace deposits host molluscan faunas that contain extralimital northern species, indicating cooler SST at the end of MIS 5. Here I present a standardized database of MIS 5e sea-level indicators along the Pacific Coast of North America and the corresponding dated samples. The database is available in Muhs (2021)  [https://doi.org/10.5281/zenodo.5557355].

Intraseasonal-to-Interannual Variability of South Indian Ocean Sea Level and Thermocline: Remote versus Local Forcing

2012 ◽  
Vol 42 (4) ◽  
pp. 602-627 ◽  
Author(s):  
Laurie L. Trenary ◽  
Weiqing Han
Keyword(s):  
Indian Ocean ◽  
Interannual Variability ◽  
Sea Level ◽  
Time Scales ◽  
Ekman Pumping ◽  
Remote Forcing ◽  
South Indian ◽  
The Pacific ◽  
The Indian Ocean ◽  
Thermocline Variability

Abstract The relative importance of local versus remote forcing on intraseasonal-to-interannual sea level and thermocline variability of the tropical south Indian Ocean (SIO) is systematically examined by performing a suite of controlled experiments using an ocean general circulation model and a linear ocean model. Particular emphasis is placed on the thermocline ridge of the Indian Ocean (TRIO; 5°–12°S, 50°–80°E). On interannual and seasonal time scales, sea level and thermocline variability within the TRIO region is primarily forced by winds over the Indian Ocean. Interannual variability is largely caused by westward propagating Rossby waves forced by Ekman pumping velocities east of the region. Seasonally, thermocline variability over the TRIO region is induced by a combination of local Ekman pumping and Rossby waves generated by winds from the east. Adjustment of the tropical SIO at both time scales generally follows linear theory and is captured by the first two baroclinic modes. Remote forcing from the Pacific via the oceanic bridge has significant influence on seasonal and interannual thermocline variability in the east basin of the SIO and weak impact on the TRIO region. On intraseasonal time scales, strong sea level and thermocline variability is found in the southeast tropical Indian Ocean, and it primarily arises from oceanic instabilities. In the TRIO region, intraseasonal sea level is relatively weak and results from Indian Ocean wind forcing. Forcing over the Pacific is the major cause for interannual variability of the Indonesian Throughflow (ITF) transport, whereas forcing over the Indian Ocean plays a larger role in determining seasonal and intraseasonal ITF variability.

scholarly journals Virus-Like Particle Production in Atmospheric Eubacteria Isolates

Atmosphere ◽  
2019 ◽  
Vol 10 (7) ◽  
pp. 417 ◽  
Author(s):  
Teigell-Perez ◽  
Gonzalez-Martin ◽  
Valladares ◽  
Smith ◽  
Griffin
Keyword(s):  
Sea Level ◽  
Long Range ◽  
Particle Production ◽  
Atmospheric Transport ◽  
Lower Atmosphere ◽  
Rates Of Evolution ◽  
Virus Like Particle ◽  
The Pacific ◽  
High Prevalence ◽  
Mid Atlantic Ridge

Culturable eubacterial isolates were collected at various altitudes in Earth’s atmosphere, including ~1.5 m above ground in Tallahassee, FL, USA; ~10.0 m above sea level over the mid-Atlantic ridge (~15° N); ~ 20 km above ground over the continental United States; ~20 km above sea level over the Pacific Ocean near southern California; and from the atmosphere of Carlsbad Cavern, Carlsbad Cavern National Park, NM, USA. Isolates were screened for the presence of inducible virus-like particles (VLP) through the use of mitomycin C and epifluorescent direct counts. We determined that 92.7% of the isolates carried inducible VLP counts in exposed versus non-exposed culture controls and that the relationship was statistically significant. Further statistical analyses revealed that the number of isolates that demonstrated VLP production did not vary among collection sites. These data demonstrate a high prevalence of VLP generation in isolates collected in the lower atmosphere and at extreme altitudes. They also show that species of eubacteria that are resistant to the rigors of atmospheric transport play a significant role in long-range atmospheric inter- and intra-continental dispersion of VLP and that long-range atmospheric transport of VLP may enhance rates of evolution at the microbial scale in receiving environments.

scholarly journals Weather Regimes and Forecast Errors in the Pacific Northwest

2009 ◽  
Vol 24 (3) ◽  
pp. 829-842 ◽  
Author(s):  
Lynn A. McMurdie ◽  
Joseph H. Casola
Keyword(s):  
Sea Level ◽  
Pacific Northwest ◽  
West Coast ◽  
Forecast Errors ◽  
Short Term ◽  
Sea Level Pressure ◽  
Weather Regimes ◽  
Numerical Weather ◽  
Level Pressure ◽  
The Pacific

Abstract Despite overall improvements in numerical weather prediction and data assimilation, large short-term forecast errors of sea level pressure and 2-m temperature still occur. This is especially true for the west coast of North America where short-term numerical weather forecasts of surface low pressure systems can have large position and central pressure errors. In this study, forecast errors of sea level pressure and temperature in the Pacific Northwest are related to the shape of the large-scale flow aloft. Applying a hierarchical limited-contour clustering algorithm to historical 500-hPa geopotential height data produces four distinct weather regimes. The Rockies ridge regime, which exhibits a ridge near the axis of the Rocky Mountains and nearly zonal flow across the Pacific, experiences the highest magnitude and frequency of large sea level pressure errors. On the other hand, the coastal ridge regime, which exhibits a ridge aligned with the North American west coast, experiences the highest magnitude and frequency of large 2-m minimum temperature errors.

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