scholarly journals Cytogenetic analyses in Trinomys (Echimyidae, Rodentia), with description of new karyotypes

PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e5316 ◽  
Author(s):  
Naiara Pereira Araújo ◽  
Cayo Augusto Rocha Dias ◽  
Rodolfo Stumpp ◽  
Marta Svartman
Keyword(s):  
Chromosome Mapping ◽  
Nucleolar Organizer ◽  
Interspecific Variation ◽  
Nucleolar Organizer Regions ◽  
45S Rdna ◽  
Banding Patterns ◽  
Pericentric Inversions ◽  
Cytogenetic Analyses ◽  
First Time

Trinomys Thomas (1921) is a terrestrial genus of spiny rats endemic to the Brazilian areas of Atlantic Forest and the transitional areas of Cerrado and Caatinga. Although most species have been already karyotyped, the available cytogenetic information is mostly restricted to diploid and fundamental numbers. We analyzed the chromosomes of two Trinomys species: Trinomys moojeni (2n = 56, FN = 106) and Trinomys setosus setosus (2n = 56, FN = 106 and 2n = 56, FN = 108). Our analyses included GTG- and CBG-banding, silver-staining of the nucleolar organizer regions, and chromosome mapping of telomeres and 45S rDNA by fluorescent in situ hybridization (FISH). Comparative GTG- and CBG-banding suggested that the interspecific variation may be due to rearrangements such as pericentric inversions, centromere repositioning, and heterochromatin variation. We report two new karyotypes for T. s. setosus and describe for the first time the banding patterns of the two Trinomys species.

Comparative cytogenetics of four species of Thrichomys (Rodentia: Echimyidae)

Genome ◽  
2019 ◽  
Vol 62 (1) ◽  
pp. 31-41
Author(s):  
Naiara Pereira Araújo ◽  
Cibele Bonvicino ◽  
Marta Svartman
Keyword(s):  
Nucleolar Organizer ◽  
Interspecific Variation ◽  
Northeastern Brazil ◽  
Nucleolar Organizer Regions ◽  
Comparative Cytogenetics ◽  
Telomeric Sequences ◽  
Interstitial Telomeric Sequences ◽  
Robertsonian Rearrangements ◽  
Cytogenetic Analyses

Thrichomys Trouessart, 1880 is a genus of echimyid rodents endemic to South America, distributed from northeastern Brazil to Paraguay and Bolivia. Although all the recognized species of this genus have already been karyotyped, detailed comparative cytogenetic analyses have not been performed yet. We karyologically analyzed four species of Thrichomys from different Brazilian states. Our analyses included GTG- and CBG-banding, silver-staining of the nucleolar organizer regions (Ag-NORs), and fluorescent in situ hybridization (FISH) with telomeric and 45S rDNA probes. Comparative GTG-banding suggested that the interspecific variation may result from Robertsonian rearrangements, pericentric and paracentric inversions, centromere repositioning, and heterochromatin variation. FISH with a telomeric probe showed interspecies variation in interstitial telomeric sequences (ITs) distribution. Our results represent the most complete data on the cytogenetics of Thrichomys reported to date and give an insight into the chromosome evolution of this genus.

New karyotypes of Atlantic tree rats, genus Phyllomys (Rodentia: Echimyidae)

Genome ◽  
2014 ◽  
Vol 57 (1) ◽  
pp. 1-8 ◽  
Author(s):  
Naiara Pereira Araújo ◽  
Ana Carolina Loss ◽  
Dirceu A. Cordeiro-Junior ◽  
Kátia Regina da Silva ◽  
Yuri L.R. Leite ◽  
...  
Keyword(s):  
Diploid Number ◽  
Nucleolar Organizer ◽  
Southeastern Brazil ◽  
Nucleolar Organizer Regions ◽  
45S Rdna ◽  
Banding Patterns ◽  
Phenotypic Characters ◽  
Staining Methods ◽  
Neotropical Rodents

Phyllomys (Echimyidae, Rodentia) is a genus of Neotropical rodents with available cytogenetic data restricted to six out of 13 species, mainly based on simple staining methods, without detailed analyses. In this work, we present new karyotypes for Phyllomys lamarum (diploid number 2n = 56, fundamental number or number of autosomal arms FN = 102) and Phyllomys sp. (2n = 74, FN = 140) from the state of Minas Gerais, southeastern Brazil. We provide the first GTG- and CBG-banding patterns, silver-staining of the nucleolar organizer regions (Ag-NORs), and fluorescence in situ hybridization (FISH) with telomeric and 45S rDNA probes of Phyllomys. In addition to examining their chromosomes and phenotypic characters, we sequenced mitochondrial DNA from the specimens analyzed to confirm their taxonomic identification. The comparison of the distinctive chromosome complements of our specimens with those of other species of Phyllomys already published allowed us to conclude that chromosome data may be very useful for the taxonomy of the genus, as no two species analyzed presented the same diploid and fundamental numbers (2n and FN).

scholarly journals Cytogenetic analyses of two Curimatidae species (Pisces; Characiformes) from the Paranapanema and Tietê Rivers

2007 ◽  
Vol 67 (2) ◽  
pp. 333-338 ◽  
Author(s):  
LVS De Rosa ◽  
F. Foresti ◽  
C. Martins ◽  
C. Oliveira ◽  
PE. Sobrinho ◽  
...  
Keyword(s):  
Fluorescent In Situ Hybridization ◽  
Constitutive Heterochromatin ◽  
Nucleolar Organizer ◽  
Terminal Region ◽  
Nucleolar Organizer Regions ◽  
Micro Structure ◽  
Isolated Populations ◽  
Cytogenetic Characterization ◽  
Cytogenetic Analyses

Cytogenetic analyses were performed in two Curimatidae species (Steindachnerina insculpta and Cyphocharax modesta) from the Paranapanema and Tietê Rivers (São Paulo State, Brazil), showing a karyotype composed of 54 meta-submetacentric chromosomes in both species. Silver- and chromomycyn-staining and fluorescent in situ hybridization (FISH) using a 18S rDNA probe indicated that the nucleolar organizer regions (NORs) of both species are localized in the terminal region of the long arm of two metacentric chromosomes. Although a single NOR system was evidenced in both analyzed species, S. insculpta and C. modesta presented the nucleolar organizer regions in distinct chromosome pairs, indicating that these cistrons can be considered cytogenetic markers. Variation on the amount and distribution of the constitutive heterochromatin (C-bands) could also be detected between the two species - while S. insculpta presented few heterochromatic blocks, intensely stained C-bands were evidenced in C. modesta specially in the terminal region of the long arm of the NOR-bearing chromosomes. Although most Curimatidae species have been characterized by homogeneous karyotypes, isolated populations could be established under different environmental conditions leading to karyotype micro-structure variations specially related to the NORs localization and C-banding distribution. The obtained data were useful for the cytogenetic characterization and differentiation of S. insculpta and C. modesta and could be used in evolutionary inferences in the Curimatidae group.

Sequential silver staining and in situ hybridization reveal a direct association between rDNA levels and the expression of homologous nucleolar organizing regions: a hypothesis for NOR structure and function

1998 ◽  
Vol 111 (10) ◽  
pp. 1433-1439
Author(s):  
F. Zurita ◽  
R. Jimenez ◽  
M. Burgos ◽  
R.D. de la Guardia
Keyword(s):  
Transcription Factors ◽  
In Situ Hybridization ◽  
Silver Staining ◽  
Organizer Region ◽  
Nucleolar Organizer ◽  
Interindividual Variation ◽  
Nucleolar Organizer Regions ◽  
Single Pair ◽  
Ribosomal Cistrons

We have developed a procedure for sequential silver staining and in situ hybridization to analyze the relationship between the amount of rDNA present in nucleolar organizer regions, as estimated by in situ hybridization, and their level of expression, as estimated by the silver signal. For simplicity we used cells from the insectivorous mole Talpa occidentalis, which have a single pair of nucleolar organizer regions in chromosome pair 3. The relative content of ribosomal cistrons was also related to the hierarchy of activation of the nucleolar organizer regions present in this chromosomal pair. Statistical analyses demonstrated that both the relative level of expression and the activation hierarchy depended mainly on the number of ribosomal cistrons in nucleolar organizer regions. We propose a functional two-step hypothesis, which is consistent with most known data concerning interchromosomal, intercellular and interindividual variation in a number of plant and animal species, including Talpa occidentalis. In step one, the first available transcription factors bind randomly to the ribosomal promoters, such that larger nucleolar organizer regions are more likely to recruit them. In the second step the remaining transcription factors are recruited in a cooperative way, thus completing activation of one nucleolar organizer region, before the next one becomes active.

scholarly journals Different Proliferation Patterns in Breast Cancer: AgNOR Measurements in ER-Negative and ER-Positive Tumor Cells

2000 ◽  
Vol 20 (4) ◽  
pp. 155-162 ◽  
Author(s):  
Lukas Günther ◽  
Peter Hufnagl ◽  
Klaus‐Jürgen Winzer ◽  
Hans Guski
Keyword(s):  
Breast Cancer ◽  
Tumor Cells ◽  
Nucleolar Organizer ◽  
Growth Fraction ◽  
Nucleolar Organizer Regions ◽  
Ki 67 ◽  
Er Positive ◽  
Negative Tumor ◽  
Invasive Breast Carcinomas

The relation between estrogen receptors (ER) and argyrophilic nucleolar organizer regions (AgNORs)in situwithin human breast cancer cells was analyzed. For AgNOR measurements in 49 invasive breast carcinomas, a new reproducible staining method for dual demonstration of ER and AgNORs was applied. Quantitative AgNOR variables were determined in ER‐positive and ER‐negative tumor cells by digital image analysis. The relationships between AgNOR parameters of ER‐positive and ER‐negative cells and other prognostic factors of breast cancer [Bloom–Richardson‐Grading and growth fraction (Ki‐67 index)] were investigated. A higher AgNOR content in ER‐negative cells and a special clustering phenomenon in ER‐positive tumor cells were found. Correlation with other criteria of malignant potential could be exclusively demonstrated for ER‐negative cells. ER‐negative cells of breast cancer can be characterized as the more malignant and possibly prognosis‐dictating cell fraction. Thus, ER‐negative cells probably contribute more to the progression of the tumor disease and furthermore to the prognosis than ER‐positive cells. We recommend measurement AgNORs exclusively in ER‐negative cells of breast cancer.

Chromosome banding in salmonid fish: nucleolar organizer regions in Salmo and Salvelinus

1985 ◽  
Vol 27 (4) ◽  
pp. 433-440 ◽  
Author(s):  
Ruth Phillips ◽  
Peter E. Ihssen
Keyword(s):  
Atlantic Salmon ◽  
Brown Trout ◽  
Brook Trout ◽  
Chromosome Banding ◽  
Lake Trout ◽  
Nucleolar Organizer ◽  
Nucleolar Organizer Regions ◽  
Banding Patterns ◽  
Single Chromosome ◽  
Secondary Constrictions

Chromosome banding patterns obtained by silver staining (Ag-NORs) were analyzed in three species of Salmo (rainbow, brown trout, and Atlantic salmon) and three species of Salvelinus (brook trout, lake trout, and arctic char). In rainbow trout and Atlantic salmon the Ag-NORs were found at the secondary constrictions of a single chromosome pair, while in brown trout the Ag-NORs were found on the short arms of one or two of the two longest subtelocentric or acrocentric chromosome pairs. The location of the Ag-NORs was multichromosomal in the three Salvelinus species, occurring on one or both members of four to six different chromosome pairs in different individuals. The Ag-NOR sites were on the short arms of some acrocentric pairs and at the telomeres of other acrocentric pairs and one or two metacentric pairs. Chromomycin A3 positive bands were found at the same sites as the Ag-NORs in all species. In the species with multichromosomal location of Ag-NORs, polymorphisms in the size and location of the NORs were extremely common, so that almost every individual fish had a different pattern of Ag-NOR sites.Key words: banding, Salmo, Salvelinus, Ag-NORs, polymorphisms, nucleolar organizer.

Comparative cytogenetic analysis of Avena macrostachya and diploid C-genome Avena species

Genome ◽  
2010 ◽  
Vol 53 (2) ◽  
pp. 125-137 ◽  
Author(s):  
Ekaterina D. Badaeva ◽  
Olga Yu. Shelukhina ◽  
Axel Diederichsen ◽  
Igor G. Loskutov ◽  
Vitaly A. Pukhalskiy
Keyword(s):  
5S Rdna ◽  
Nucleolar Organizer ◽  
Nucleolar Organizer Regions ◽  
Rrna Gene ◽  
Avena Species ◽  
Rdna Sites ◽  
C Genome ◽  
Genome Group ◽  
26S Rrna

The chromosome set of Avena macrostachya Balansa ex Coss. et Durieu was analyzed using C-banding and fluorescence in situ hybridization with 5S and 18S-5.8S-26S rRNA gene probes, and the results were compared with the C-genome diploid Avena L. species. The location of major nucleolar organizer regions and 5S rDNA sites on different chromosomes confirmed the affiliation of A. macrostachya with the C-genome group. However, the symmetric karyotype, the absence of “diffuse heterochromatin”, and the location of large C-band complexes in proximal chromosome regions pointed to an isolated position of A. macrostachya from other Avena species. Based on the distribution of rDNA loci on the C-genome chromosomes of diploid and polyploid Avena species, we propose a model of the chromosome alterations that occurred during the evolution of oat species.

Dynamic Changes in the Distribution of a Satellite Homologous to Intergenic 26-18S rDNA Spacer in the Evolution of Nicotiana

Genetics ◽  
2004 ◽  
Vol 166 (4) ◽  
pp. 1935-1946
Author(s):  
K Y Lim ◽  
K Skalicka ◽  
B Koukalova ◽  
R A Volkov ◽  
R Matyasek ◽  
...  
Keyword(s):  
18S Rdna ◽  
Intergenic Spacer ◽  
Nucleolar Organizer ◽  
Nucleolar Organizer Regions ◽  
Dynamic Nature ◽  
Dynamic Changes ◽  
Nicotiana Tomentosiformis ◽  
Copy Numbers ◽  
Location Patterns

Abstract An ∼135-bp sequence called the A1/A2 repeat was isolated from the transcribed region of the 26-18S rDNA intergenic spacer (IGS) of Nicotiana tomentosiformis. Fluorescence in situ hybridization (FISH) and Southern blot analysis revealed its occurrence as an independent satellite (termed an A1/A2 satellite) outside of rDNA loci in species of Nicotiana section Tomentosae. The chromosomal location, patterns of genomic dispersion, and copy numbers of its tandemly arranged units varied between the species. In more distantly related Nicotiana species the A1/A2 repeats were found only at the nucleolar organizer regions (NOR). There was a trend toward the elimination of the A1/A2 satellite in N. tabacum (tobacco), an allotetraploid with parents closely related to the diploids N. sylvestris and N. tomentosiformis. This process may have already commenced in an S3 generation of synthetic tobacco. Cytosine residues in the IGS were significantly hypomethylated compared with the A1/A2 satellite. There was no clear separation between the IGS and satellite fractions in sequence analysis of individual clones and we found no evidence for CG suppression. Taken together the data indicate a dynamic nature of the A1/A2 repeats in Nicotiana genomes, with evidence for recurrent integration, copy number expansions, and contractions.

scholarly journals Cytogenetics of two sympatric Corydoras species (pisces, siluriformes, challichtyidae) of Southern Brazil

2006 ◽  
Vol 66 (1b) ◽  
pp. 191-198 ◽  
Author(s):  
R. F. Artoni ◽  
M. L. Terêncio ◽  
M. R. Vicari ◽  
M. C. A. Matiello ◽  
M. M. Cestari ◽  
...  
Keyword(s):  
In Situ Hybridization ◽  
Diploid Number ◽  
Constitutive Heterochromatin ◽  
Nucleolar Organizer ◽  
Nucleolar Organizer Regions ◽  
Great Similarity ◽  
Southern Brazil ◽  
Rdna Probe ◽  
Karyotypic Formula

Karyotypic data are presented for two sympatric Corydoras species of the Lagoa Dourada, namely, C. ehrhadti and C. paleatus, which are found in the upper Tibagi river basin (Ponta Grossa, State of Paraná, Brazil). The same diploid number and karyotypic formula were observed in both species/populations. A great similarity in the constitutive heterochromatin distribution and in the activity of nucleolar organizer regions was also found. The use of in situ hybridization with a fluorescent 18S rDNA probe allowed for the identification of the species/populations through the location of ribosomal sites.

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