scholarly journals A genome-wide assessment of stages of elevational parapatry in Bornean passerine birds reveals no introgression: implications for processes and patterns of speciation

PeerJ ◽  
2017 ◽  
Vol 5 ◽  
pp. e3335 ◽  
Author(s):  
Robert G. Moyle ◽  
Joseph D. Manthey ◽  
Peter A. Hosner ◽  
Mustafa Rahman ◽  
Maklarin Lakim ◽  
...  
Keyword(s):  
Gene Flow ◽  
Species Diversity ◽  
Genetic Relationships ◽  
Elevational Gradient ◽  
Secondary Contact ◽  
Elevational Gradients ◽  
Reduced Representation ◽  
Allopatric Species ◽  
A Genome ◽  
Elevational Range

Topographically complex regions often contain the close juxtaposition of closely related species along elevational gradients. The evolutionary causes of these elevational replacements, and thus the origin and maintenance of a large portion of species diversity along elevational gradients, are usually unclear because ecological differentiation along a gradient or secondary contact following allopatric diversification can produce the same pattern. We used reduced representation genomic sequencing to assess genetic relationships and gene flow between three parapatric pairs of closely related songbird taxa (Arachnothera spiderhunters, Chloropsis leafbirds, and Enicurus forktails) along an elevational gradient in Borneo. Each taxon pair presents a different elevational range distribution across the island, yet results were uniform: little or no gene flow was detected in any pairwise comparisons. These results are congruent with an allopatric “species-pump” model for generation of species diversity and elevational parapatry of congeners on Borneo, rather than in situ generation of species by “ecological speciation” along an elevational gradient.

Playbacks revisited: asymmetry in behavioural response across an acoustic boundary between two parapatric bird species

Behaviour ◽  
2015 ◽  
Vol 152 (14) ◽  
pp. 1933-1951 ◽  
Author(s):  
Tamsin Burbidge ◽  
Thari Parson ◽  
Paula C. Caycedo-Rosales ◽  
Carlos Daniel Cadena ◽  
Hans Slabbekoorn
Keyword(s):  
Gene Flow ◽  
Response Pattern ◽  
Bird Species ◽  
Elevational Gradient ◽  
High Elevation ◽  
Secondary Contact ◽  
Potential Contribution ◽  
Asymmetric Response ◽  
Singing Style ◽  
The Impact

Behavioural barriers to gene flow can play a key role in speciation and hybridisation. Birdsong is well-known for its potential contribution to such behavioural barriers as it may affect gene flow through an effect on territorial and mating success across population boundaries. Conspecific recognition and heterospecific discrimination of acoustic variation can prevent or limit hybridization in areas where closely related species meet. Here we tested the impact of song differences on territorial response levels between two adjacent Henicorhina wood-wren species along an elevational gradient in Colombia. In an earlier study, playback results had revealed an asymmetric response pattern, with low-elevation H. leucophrys bangsi responding strongly to any conspecific or heterospecific song variant, whereas high-elevation H. anachoreta birds discriminated, responding more strongly to their own songs than to those of bangsi. However, in that study we could not exclude a role for relative familiarity to the song stimuli. In the current study we confirm the asymmetric response pattern with song stimuli recorded close to and on both sides of the distinct acoustic boundary. Furthermore, we also show a previously unnoticed divergence in singing style between these two wood-wren species, which may contribute to an acoustically guided barrier to hybridization in this secondary contact zone.

Systematics and evolution of Lentibulariaceae: III. Utricularia

2018 ◽  
Author(s):  
Richard W. Jobson ◽  
Paulo C. Baleeiro ◽  
Cástor Guisande
Keyword(s):  
Gene Flow ◽  
Species Diversity ◽  
Population Level ◽  
Oceanic Islands ◽  
Vulnerable Species ◽  
Phylogenetic Studies ◽  
Molecular Phylogenetic

Utricularia is a morphologically and ecologically diverse genus currently comprising more than 230 species divided into three subgenera—Polypompholyx, Utricularia, and Bivalvaria—and 35 sections. The genus is distributed worldwide except on the poles and most oceanic islands. The Neotropics has the highest species diversity, followed by Australia. Compared to its sister genera, Utricularia has undergone greater rates of speciation, which are linked to its extreme morphological flexibility that has resulted in the evolution of habitat-specific forms: terrestrial, rheophytic, aquatic, lithophytic, and epiphytic. Molecular phylogenetic studies have resolved relationships for 44% of the species across 80% of the sections. Scant data are available for phylogeography or population-level processes such as gene flow, hybridization, or pollination. Because nearly 90% of the species are endemics, data are urgently needed to determine how to protect vulnerable species and their habitats.

scholarly journals Endocrine Fertility Parameters—Genomic Background and Their Genetic Relationship to Boar Taint in German Landrace and Large White

Animals ◽  
2021 ◽  
Vol 11 (1) ◽  
pp. 231
Author(s):  
Ines Brinke ◽  
Christine Große-Brinkhaus ◽  
Katharina Roth ◽  
Maren Julia Pröll-Cornelissen ◽  
Sebastian Klein ◽  
...  
Keyword(s):  
Genetic Relatedness ◽  
Genetic Relationships ◽  
Young Male ◽  
Boar Taint ◽  
Genetic Progress ◽  
Large White ◽  
Genome Wide ◽  
A Genome ◽  
Different Origins ◽  
Fertility Traits

The surgical castration of young male piglets without anesthesia is no longer allowed in Germany from 2021. One alternative is breeding against boar taint, but shared synthesis pathways of androstenone (AND) and several endocrine fertility parameters (EFP) indicate a risk of decreasing fertility. The objective of this study was to investigate the genetic background between AND, skatole (SKA), and six EFP in purebred Landrace (LR) and Large White (LW) populations. The animals were clustered according to their genetic relatedness because of their different origins. Estimated heritabilities (h2) of AND and SKA ranged between 0.52 and 0.34 in LR and LW. For EFP, h2 differed between the breeds except for follicle-stimulating hormone (FSH) (h2: 0.28–0.37). Both of the breeds showed unfavorable relationships between AND and testosterone, 17-β estradiol, and FSH. The genetic relationships (rg) between SKA and EFP differed between the breeds. A genome-wide association analysis revealed 48 significant associations and confirmed a region for SKA on Sus Scrofa chromosome (SSC) 14. For EFP, the results differed between the clusters. In conclusion, rg partly confirmed physiologically expected antagonisms between AND and EFP. Particular attention should be spent on fertility traits that are based on EFP when breeding against boar taint to balance the genetic progress in both of the trait complexes.

scholarly journals Evolutionary history and genetic connectivity across highly fragmented populations of an endangered daisy

Heredity ◽  
2021 ◽  
Author(s):  
Yael S. Rodger ◽  
Alexandra Pavlova ◽  
Steve Sinclair ◽  
Melinda Pickup ◽  
Paul Sunnucks
Keyword(s):  
Genetic Diversity ◽  
Gene Flow ◽  
Genetic Differentiation ◽  
Evolutionary History ◽  
Livestock Grazing ◽  
Genetic Connectivity ◽  
Evolutionary Divergence ◽  
Common Component ◽  
A Genome ◽  
Eastern Australia

AbstractConservation management can be aided by knowledge of genetic diversity and evolutionary history, so that ecological and evolutionary processes can be preserved. The Button Wrinklewort daisy (Rutidosis leptorrhynchoides) was a common component of grassy ecosystems in south-eastern Australia. It is now endangered due to extensive habitat loss and the impacts of livestock grazing, and is currently restricted to a few small populations in two regions >500 km apart, one in Victoria, the other in the Australian Capital Territory and nearby New South Wales (ACT/NSW). Using a genome-wide SNP dataset, we assessed patterns of genetic structure and genetic differentiation of 12 natural diploid populations. We estimated intrapopulation genetic diversity to scope sources for genetic management. Bayesian clustering and principal coordinate analyses showed strong population genetic differentiation between the two regions, and substantial substructure within ACT/NSW. A coalescent tree-building approach implemented in SNAPP indicated evolutionary divergence between the two distant regions. Among the populations screened, the last two known remaining Victorian populations had the highest genetic diversity, despite having among the lowest recent census sizes. A maximum likelihood population tree method implemented in TreeMix suggested little or no recent gene flow except potentially between very close neighbours. Populations that were more genetically distinctive had lower genetic diversity, suggesting that drift in isolation is likely driving population differentiation though loss of diversity, hence re-establishing gene flow among them is desirable. These results provide background knowledge for evidence-based conservation and support genetic rescue within and between regions to elevate genetic diversity and alleviate inbreeding.

Insect Herbivory on the Plant Rhinanthus minor over its Elevational Range in the Canadian Rockies

2018 ◽  
Author(s):  
Lindsey Falk
Keyword(s):  
Insect Herbivory ◽  
Elevational Gradient ◽  
Scientific Models ◽  
Biotic Factors ◽  
Plant Interactions ◽  
Plant Populations ◽  
Species Ranges ◽  
Pesticide Treatment ◽  
Rhinanthus Minor ◽  
Elevational Range

All species of plants and animals occur over a finite area of the Earth’s surface. This is referred to as the species range, and many species ranges have shifted or are predicted to shift with climate change. Scientific models have predicted how these shifts are expected to change and what proportion of the implicated species will go extinct in the process. Most models assume that climatic variables such as temperature and rainfall are solely responsible for these range shifts. However, we know that the success of a species is strongly influenced by both their positive and negative interactions with other species, such as competition, mutualism, predation and herbivory. But how these biotic factors affect species ranges is poorly understood. I am using a field experiment on a species in its native habitat to better understand these interactions.  My study took place in the Canadian Rocky Mountains on populations of the plant Yellow Rattle (Rhinanthus minor). I studied two transects, each with plant populations at low, mid and high elevations. Insect herbivory on plant populations was observed, as well as manipulated, via a pesticide treatment to reduce insect herbivory, and a clipping treatment to simulate natural insect herbivory. Understanding herbivory and herbivore-plant interactions over an elevational gradient may help give us a clearer idea of the complex relationship between the climatic and biotic factors that affect plant species ranges.

Habitat differentiation between estuarine and inland Hibiscus tiliaceus L. (Malvaceae) as revealed by retrotransposon-based SSAP marker

2011 ◽  
Vol 59 (6) ◽  
pp. 515 ◽  
Author(s):  
Tian Tang ◽  
Lian He ◽  
Feng Peng ◽  
Suhua Shi
Keyword(s):  
Genetic Variation ◽  
Gene Flow ◽  
Genetic Distance ◽  
Genetic Variance ◽  
Genetic Relationships ◽  
Principal Coordinate Analysis ◽  
Geographical Isolation ◽  
Tidal Zone ◽  
Ecological Scale ◽  
Habitat Differentiation

Hibiscus tiliaceus L. (Malvaceae) is a pantropical coastal tree that extends to the tidal zone. In this study, the retrotransposon sequence-specific amplified polymorphism (SSAP) technique was used in order to understand the genetic variation between four population pairs of H. tiliaceus from repeated estuarine and inland habitat contrasts in China. The estuarine populations were consistently more genetic variable compared with the inland ones, which may be attributed to extensive gene flow via water-drifted seeds and/or retrotransposon activation in stressful estuarine environments. An AMOVA revealed that 8.9% of the genetic variance could be explained by the habitat divergence within site, as compared with only 4.9% to geographical isolation between sites, which indicates significant habitat differentiation between the estuarine and inland populations. The estuarine populations were less differentiated (ΦST = 0.115) than the inland (ΦST = 0.152) implying frequent gene interchange in the former. Accordingly, the principal coordinate analysis of genetic distance between individuals revealed that genetic relationships are not fully consistent with the geographic association. These results suggest that despite substantial gene flow via sea-drifted seeds, habitat-related divergent selection could be one of the primary mechanisms that drive habitat differentiation in H. tiliaceus at a local ecological scale.

Sign in / Sign up

Export Citation Format

Share Document