scholarly journals Metabarcoding confirms the opportunistic foraging behaviour of Atlantic bluefin tuna and reveals the importance of gelatinous prey

PeerJ ◽  
2021 ◽  
Vol 9 ◽  
pp. e11757
Author(s):  
Babett Günther ◽  
Jean-Marc Fromentin ◽  
Luisa Metral ◽  
Sophie Arnaud-Haond
Keyword(s):  
Direct Method ◽  
Feeding Habits ◽  
Stomach Contents ◽  
Bluefin Tuna ◽  
Atlantic Bluefin Tuna ◽  
Marine Predators ◽  
High Prevalence ◽  
Dna Metabarcoding ◽  
V1v2 Region

Studies of the diet, feeding habits and trophic activity of top marine predators are essential for understanding their trophodynamics. The main direct method used for such studies thus far has been morphological inventories of stomach contents. This approach presents limitations such as missing gelatinous prey, which are usually digested too quickly to be detectable. Here, we analysed the stomachs of 48 Atlantic bluefin tuna (Thunnus thynnus, approximately 15 to 60 kg, including juveniles and adult fishes) collected from the Mediterranean Sea through the metabarcoding of two gene regions (cytochrome c oxidase subunit I (COI) and the ribosomal 18S-V1V2 region). The identified prey taxa and their relative read abundances (RRAs) estimated using COI results were in line with the findings of morphologically based inventories simultaneously performed on the same set of tuna samples. In both cases (and with the same rankings), the prey taxa included anchovy (Engraulis encrasicolus, here detected in more than 80% of samples, RRA = 43%), sardine (Sardina pilchardus, also approximately 80%, RRA = 30%), sprat (Sprattus sprattus, approximately 66%, RRA = 8%), mackerel (Scomber colias, approximately 44%, RRA = 7%) and cephalopods (approximately 15%, RRA = 1.4%). Another striking result was the detection, based on 18S (with which vertebrates were detected as the most abundant group, RRA = 61.6%), of a high prevalence and diversity of gelatinous organisms (RRA = 27.1%), including cnidarians (6.7%), salps (11.7%), and ctenophores (8.7%), the latter increasing with the size of the predator. These results thus support the hypothesis of the role of gelatinous prey in the diet of Atlantic bluefin tuna, suggesting that this species is even more generalist and opportunistic than previously thought. This study further confirms that DNA metabarcoding can be a powerful tool for assessing the diet and trophodynamics of top marine predators.

scholarly journals Tissue Distribution of Mercury and Its Relationship with Selenium in Atlantic Bluefin Tuna (Thunnus thynnus L.)

2021 ◽  
Vol 18 (24) ◽  
pp. 13376
Author(s):  
Antonio Belmonte ◽  
Pilar Muñoz ◽  
Juan Santos-Echeandía ◽  
Diego Romero
Keyword(s):  
Heavy Metal ◽  
Food Safety ◽  
Concentration Ratio ◽  
Health Benefit ◽  
Bluefin Tuna ◽  
Antagonistic Effect ◽  
Thunnus Thynnus ◽  
Atlantic Bluefin Tuna ◽  
Marine Predators ◽  
Total Hg

Mercury (Hg) is an important heavy metal to consider in marine predators, while selenium (Se) has a natural antagonistic effect on this metal in fish. The Atlantic bluefin tuna (ABFT, Thunnus thynnus) is a pelagic top-level predator of the trophic web and their Hg muscular content is an object of concern in food safety. Nevertheless, little is known about levels of this metal in remaining tissues, which may be important as by-product source, and its relationship with Se. Thus, concentration of both elements in liver, kidney, brain, gill and bone, in addition to muscle, of ABFT were determined. The kidney was the tissue with the highest concentration of Hg (Total-Hg, THg) and Se, and the Se/THg concentration ratio was similar in all tissues, except bone and muscle. The Selenium Health Benefit Value (HBVSe) was positive in each specimen and tissue, indicating that the Se plays an important role against Hg not only in the muscle.

scholarly journals Feeding habits of the Atlantic bluefin tuna, Thunnus thynnus (L. 1758), in the central Mediterranean Sea (Strait of Messina)

2012 ◽  
Vol 67 (1) ◽  
pp. 97-107 ◽  
Author(s):  
Pietro Battaglia ◽  
Franco Andaloro ◽  
Pierpaolo Consoli ◽  
Valentina Esposito ◽  
Danilo Malara ◽  
...  
Keyword(s):  
Mediterranean Sea ◽  
Feeding Habits ◽  
Bluefin Tuna ◽  
Thunnus Thynnus ◽  
Central Mediterranean ◽  
Atlantic Bluefin Tuna ◽  
Central Mediterranean Sea

Investigating diet patterns of highly mobile marine predators using stomach contents, stable isotope, and fatty acid analyses

2018 ◽  
Vol 75 (5) ◽  
pp. 1583-1590 ◽  
Author(s):  
Talia Young ◽  
Jennifer Pincin ◽  
Philipp Neubauer ◽  
Sofía Ortega-García ◽  
Olaf P Jensen
Keyword(s):  
Fatty Acid ◽  
Stable Isotope ◽  
Trophic Ecology ◽  
Feeding Habits ◽  
Stomach Contents ◽  
Short Term ◽  
Predator Species ◽  
Diet Patterns ◽  
Marine Predators

Abstract Determining what animals eat is simultaneously challenging and yet also critical for ecologists, fisheries scientists, and resource managers. The tools of trophic ecology have expanded considerably in the last half century in pursuit of this goal. In this study, we combined stomach contents, stable isotope, and fatty acid analyses to investigate trophic patterns in three species of highly mobile, pelagic predators: striped marlin (Kajikia audax), blue marlin (Makaira nigricans), and common dolphinfish (Coryphaena hippurus). We were particularly interested in examining individual diet specialization among these species. We compared the short-term stomach contents with long-term diet proportions estimated from stable isotope ratios and fatty acid profiles using a Bayesian mixing model. Our results indicate that all three species feed on a mix of prey types. This work furthermore suggests that individuals of all three predator species demonstrate generalist feeding habits, with minimal differences in long-term (weeks, months) diet estimates between individuals with different short-term (hours, days) stomach contents. This novel, three-part analytical approach can elucidate complex and otherwise elusive trophic dynamics.

Environmental DNA for functional diversity

2018 ◽  
Author(s):  
Pierre Taberlet ◽  
Aurélie Bonin ◽  
Lucie Zinger ◽  
Eric Coissac
Keyword(s):  
Functional Groups ◽  
Functional Diversity ◽  
Environmental Dna ◽  
Soil Organisms ◽  
Meaningful Information ◽  
Dna Metabarcoding ◽  
Pros And Cons ◽  
Target Community

Chapter 10 “Environmental DNA for functional diversity” discusses the potential of environmental DNA to assess functional diversity. It first focuses on DNA metabarcoding and discusses the extent to which this approach can be used and/or optimized to retrieve meaningful information on the functions of the target community. This knowledge usually involves coarsely defined functional groups (e.g., woody, leguminous, graminoid plants; shredders or decomposer soil organisms; pathogenicity or decomposition role of certain microorganisms). Chapter 10 then introduces metagenomics and metatranscriptomics approaches, their advantages, but also the challenges and solutions to appropriately sampling, sequencing these complex DNA/RNA populations. Chapter 10 finally presents several strategies and software to analyze metagenomes/metatranscriptomes, and discusses their pros and cons.

Environmental DNA

2018 ◽  
Author(s):  
Pierre Taberlet ◽  
Aurélie Bonin ◽  
Lucie Zinger ◽  
Eric Coissac
Keyword(s):  
Graduate Students ◽  
Feeding Habits ◽  
Environmental Dna ◽  
Research Field ◽  
Background Information ◽  
Ecological Processes ◽  
Biodiversity Research ◽  
Dna Metabarcoding ◽  
Standard Information

Environmental DNA (eDNA), i.e. DNA released in the environment by any living form, represents a formidable opportunity to gather high-throughput and standard information on the distribution or feeding habits of species. It has therefore great potential for applications in ecology and biodiversity management. However, this research field is fast-moving, involves different areas of expertise and currently lacks standard approaches, which calls for an up-to-date and comprehensive synthesis. Environmental DNA for biodiversity research and monitoring covers current methods based on eDNA, with a particular focus on “eDNA metabarcoding”. Intended for scientists and managers, it provides the background information to allow the design of sound experiments. It revisits all steps necessary to produce high-quality metabarcoding data such as sampling, metabarcode design, optimization of PCR and sequencing protocols, as well as analysis of large sequencing datasets. All these different steps are presented by discussing the potential and current challenges of eDNA-based approaches to infer parameters on biodiversity or ecological processes. The last chapters of this book review how DNA metabarcoding has been used so far to unravel novel patterns of diversity in space and time, to detect particular species, and to answer new ecological questions in various ecosystems and for various organisms. Environmental DNA for biodiversity research and monitoring constitutes an essential reading for all graduate students, researchers and practitioners who do not have a strong background in molecular genetics and who are willing to use eDNA approaches in ecology and biomonitoring.

scholarly journals Anti-phospholipid syndrome and COVID-19 thrombosis: connecting the dots

2021 ◽  
Vol 5 (1) ◽  
Author(s):  
Moon Ley Tung ◽  
Bryce Tan ◽  
Robin Cherian ◽  
Bharatendu Chandra
Keyword(s):  
Endothelial Dysfunction ◽  
Severe Acute Respiratory Syndrome ◽  
Potential Role ◽  
Molecular Mimicry ◽  
Thromboembolic Events ◽  
The Past ◽  
High Prevalence ◽  
Connecting The Dots ◽  
Anti Phospholipid Syndrome

Abstract As the coronavirus disease 2019 (COVID-19) pandemic, which is caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), is spreading rapidly worldwide, it has emerged as a leading cause of mortality, resulting in >1 million deaths over the past 10 months. The pathophysiology of COVID-19 remains unclear, posing a great challenge to the medical management of patients. Recent studies have reported an unusually high prevalence of thromboembolic events in COVID-19 patients, although the mechanism remains elusive. Several studies have reported the presence of aPLs in COVID-19 patients. We have noticed similarities between COVID-19 and APS, which is an autoimmune prothrombotic disease that is often associated with an infective aetiology. Molecular mimicry and endothelial dysfunction could plausibly explain the mechanism of thrombogenesis in acquired APS. In this review, we discuss the clinicopathological similarities between COVID-19 and APS, and the potential role of therapeutic targets based on the anti-phospholipid model for COVID-19 disease.

Active prey selection in developing larvae of Atlantic bluefin tuna (Thunnus thynnus) in spawning grounds of the Gulf of Mexico

2021 ◽  
Author(s):  
Akihiro Shiroza ◽  
Estrella Malca ◽  
John T Lamkin ◽  
Trika Gerard ◽  
Michael R Landry ◽  
...  
Keyword(s):  
Gulf Of Mexico ◽  
Prey Selection ◽  
Bluefin Tuna ◽  
Gut Contents ◽  
Physical Factors ◽  
Larval Rearing ◽  
Thunnus Thynnus ◽  
Small Copepod ◽  
Atlantic Bluefin Tuna ◽  
Larval Stages

Abstract Bluefin tuna spawn in restricted areas of subtropical oligotrophic seas. Here, we investigate the zooplankton prey and feeding selectivity of early larval stages of Atlantic bluefin tuna (ABT, Thunnus thynnus) in larval rearing habitat of the Gulf of Mexico. Larvae and zooplankton were collected during two multi-day Lagrangian experiments during peak spawning in May 2017 and 2018. Larvae were categorized by flexion stage and standard length. We identified, enumerated and sized zooplankton from larval gut contents and in the ambient community. Ciliates were quantitatively important (up to 9%) in carbon-based diets of early larvae. As larvae grew, diet composition and prey selection shifted from small copepod nauplii and calanoid copepodites to larger podonid cladocerans, which accounted for up to 70% of ingested carbon. Even when cladoceran abundances were <0.2 m−3, they comprised 23% of postflexion stage diet. Feeding behaviors of larvae at different development stages were more specialized, and prey selection narrowed to appendicularians and primarily cladocerans when these taxa were more abundant. Our findings suggest that ABT larvae have the capacity to switch from passive selection, regulated by physical factors, to active selection of presumably energetically optimal prey.

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