scholarly journals Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms

PeerJ ◽  
2021 ◽  
Vol 9 ◽  
pp. e11721
Author(s):  
Taylor Priest ◽  
Luis H. Orellana ◽  
Bruno Huettel ◽  
Bernhard M. Fuchs ◽  
Rudolf Amann

The impacts of climate change on the Arctic Ocean are manifesting throughout the ecosystem at an unprecedented rate. Of global importance are the impacts on heat and freshwater exchange between the Arctic and North Atlantic Oceans. An expanding Atlantic influence in the Arctic has accelerated sea-ice decline, weakened water column stability and supported the northward shift of temperate species. The only deep-water gateway connecting the Arctic and North Atlantic and thus, fundamental for these exchange processes is the Fram Strait. Previous research in this region is extensive, however, data on the ecology of microbial communities is limited, reflecting the wider bias towards temperate and tropical latitudes. Therefore, we present 14 metagenomes, 11 short-read from Illumina and three long-read from PacBio Sequel II, of the 0.2–3 µm fraction to help alleviate such biases and support future analyses on changing ecological patterns. Additionally, we provide 136 species-representative, manually refined metagenome-assembled genomes which can be used for comparative genomics analyses and addressing questions regarding functionality or distribution of taxa.

2020 ◽  
Vol 14 (2) ◽  
pp. 477-495 ◽  
Author(s):  
Valeria Selyuzhenok ◽  
Igor Bashmachnikov ◽  
Robert Ricker ◽  
Anna Vesman ◽  
Leonid Bobylev

Abstract. This study explores a link between the long-term variations in the integral sea ice volume (SIV) in the Greenland Sea and oceanic processes. Using the Pan-Arctic Ice Ocean Modeling and Assimilation System (PIOMAS, 1979–2016), we show that the increasing sea ice volume flux through Fram Strait goes in parallel with a decrease in SIV in the Greenland Sea. The overall SIV loss in the Greenland Sea is 113 km3 per decade, while the total SIV import through Fram Strait increases by 115 km3 per decade. An analysis of the ocean temperature and the mixed-layer depth (MLD) over the climatic mean area of the winter marginal sea ice zone (MIZ) revealed a doubling of the amount of the upper-ocean heat content available for the sea ice melt from 1993 to 2016. This increase alone can explain the SIV loss in the Greenland Sea over the 24-year study period, even when accounting for the increasing SIV flux from the Arctic. The increase in the oceanic heat content is found to be linked to an increase in temperature of the Atlantic Water along the main currents of the Nordic Seas, following an increase in the oceanic heat flux from the subtropical North Atlantic. We argue that the predominantly positive winter North Atlantic Oscillation (NAO) index during the 4 most recent decades, together with an intensification of the deep convection in the Greenland Sea, is responsible for the intensification of the cyclonic circulation pattern in the Nordic Seas, which results in the observed long-term variations in the SIV.


2020 ◽  
Vol 47 (3) ◽  
Author(s):  
Qiang Wang ◽  
Claudia Wekerle ◽  
Xuezhu Wang ◽  
Sergey Danilov ◽  
Nikolay Koldunov ◽  
...  

2020 ◽  
Author(s):  
Akil Hossain ◽  
Gregor Knorr ◽  
Gerrit Lohmann ◽  
Michael Stärz ◽  
Wilfried Jokat

<p> <span><span>Changes in ocean gateway configuration are known to induce basin-scale rearrangements in ocean characteristics throughout the Cenozoic. </span><span>However, there is large uncertainty in the relative timing of the </span><span>subsidence histories of ocean gateways in the northern high latitudes. By using a fully coupled General Circulation </span><span>Model we investigate the salinity and temperature changes in response to the subsidence of two key ocean gateways in the northern high latitudes during early to middle Miocene. </span><span>Deepening of the Greenland-Scotland Ridge </span><span>causes a salinity increase and warming in the Nordic Seas and the Arctic Ocean. </span><span>While warming this realm, deep water formation takes place at lower temperatures due to a shift of the convection sites to north off Iceland. </span><span>The associated deep ocean cooling and </span><span>upwelling of deep waters to the Southern Ocean surface causes a cooling in the southern high latitudes.</span> <span>These characteristic impacts in response to the </span><span>Greenland-Scotland Ridge</span><span> deepening are independent of the </span><span>Fram Strait</span><span> state.</span> <span>Subsidence of the Fram Strait for a deep Greenland-Scotland Ridge causes </span><span>less pronounced warming and salinity increase</span><span> in </span><span>the </span><span>Nordic Seas. </span><span>A stronger salinity increase is detected in the Arctic while temperatures remain unaltered, which further increases the density of the North Atlantic Deep Water. This causes an enhanced contribution of North Atlantic Deep Water </span><span>to the abyssal ocean and on the expense of the colder southern source water component. These relative changes largely counteract each other and cause little </span><span>warming in the upwelling regions of the Southern Ocean.</span></span></p>


2020 ◽  
Author(s):  
David Lipson ◽  
Kim Reasor ◽  
Kååre Sikuaq Erickson

<p>The predominantly Inupiat people of Utqiaġvik, Alaska are among those who will be most impacted by<br>climate change and the loss of Arctic sea ice in the near future. Subsistence hunting of marine mammals<br>associated with sea ice is central to the Inupiat way of life. Furthermore, their coastal homes and<br>infrastructure are increasingly subject to damage from increased wave action on ice-free Beaufort and<br>Chukchi Seas. While the people of this region are among the most directly vulnerable to climate change,<br>the subject is not often discussed in the elementary school curriculum. Meanwhile, in many other parts<br>of the world, the impacts of climate change are viewed as abstract and remote. We worked with fifth<br>grade children in Utqiaġvik both to educate them, but also to engage them in helping us communicate<br>to rest of the world, in an emotionally resonant way, the direct impacts of climate change on families in<br>this Arctic region.<br>The team consisted of a scientist (Lipson), an artist (Reasor) and an outreach specialist (Erickson) of<br>Inupiat heritage from a village in Alaska. We worked with four 5th grade classes of about 25 students<br>each at Fred Ipalook Elementary in Utqiaġvik, AK. The scientist gave a short lecture about sea ice and<br>climate change in the Arctic, with emphasis on local impacts to hunting and infrastructure (with<br>interjections from the local outreach specialist). We then showed the students a large poster of<br>historical and projected sea ice decline, and asked the students to help us fill in the white space beneath<br>the lines. The artist led the children in making small art pieces that represent things that are important<br>to their lives in Utqiaġvik (they were encouraged to paint animals, but they were free to do whatever<br>they wanted). We returned to the class later that week and had each student briefly introduce<br>themselves and their painting, and place it to the large graph of sea ice decline, which included the dire<br>predictions of the RCP8.5 scenario. At the end we added the more hopeful RCP2.6 scenario to end on a<br>positive note. The artist then painted in the more hopeful green line by hand.<br>The result was a poster showing historical and projected Arctic sea ice cover, with 100 beautiful<br>paintings by children of things that are dear to them about their home being squeezed into a smaller<br>region as the sea ice cover diminishes. We scanned all the artwork to make a digital version of the<br>poster, and left the original with the school. These materials are being converted into an interactive<br>webpage where viewers can click on the individual painting for detail, and get selected recordings of the<br>children’s statements about their artwork. This project can serve as a nucleus for communicating to<br>other classes and adults about the real impacts of climate change in people’s lives.</p>


2006 ◽  
Vol 19 (23) ◽  
pp. 6221-6242 ◽  
Author(s):  
Marika M. Holland ◽  
Joel Finnis ◽  
Mark C. Serreze

Abstract The Arctic Ocean freshwater budgets in climate model integrations of the twentieth and twenty-first century are examined. An ensemble of six members of the Community Climate System Model version 3 (CCSM3) is used for the analysis, allowing the anthropogenically forced trends over the integration length to be assessed. Mechanisms driving trends in the budgets are diagnosed, and the implications of changes in the Arctic–North Atlantic exchange on the Labrador Sea and Greenland–Iceland–Norwegian (GIN) Seas properties are discussed. Over the twentieth and the twenty-first centuries, the Arctic freshens as a result of increased river runoff, net precipitation, and decreased ice growth. For many of the budget terms, the maximum 50-yr trends in the time series occur from approximately 1975 to 2025, suggesting that we are currently in the midst of large Arctic change. The total freshwater exchange between the Arctic and North Atlantic increases over the twentieth and twenty-first centuries with decreases in ice export more than compensated for by an increase in the liquid freshwater export. Changes in both the liquid and solid (ice) Fram Strait freshwater fluxes are transported southward by the East Greenland Current and partially removed from the GIN Seas. Nevertheless, reductions in GIN sea ice melt do result from the reduced Fram Strait transport and account for the largest term in the changing ocean surface freshwater fluxes in this region. This counteracts the increased ocean stability due to the warming climate and helps to maintain GIN sea deep-water formation.


2013 ◽  
Vol 9 (4) ◽  
pp. 1505-1518 ◽  
Author(s):  
C. V. Dylmer ◽  
J. Giraudeau ◽  
F. Eynaud ◽  
K. Husum ◽  
A. De Vernal

Abstract. Three marine sediment cores distributed along the Norwegian (MD95-2011), Barents Sea (JM09-KA11-GC), and Svalbard (HH11-134-BC) continental margins have been investigated in order to reconstruct changes in the poleward flow of Atlantic waters (AW) and in the nature of upper surface water masses within the eastern Nordic Seas over the last 3000 yr. These reconstructions are based on a limited set of coccolith proxies: the abundance ratio between Emiliania huxleyi and Coccolithus pelagicus, an index of Atlantic vs. Polar/Arctic surface water masses; and Gephyrocapsa muellerae, a drifted coccolith species from the temperate North Atlantic, whose abundance changes are related to variations in the strength of the North Atlantic Current. The entire investigated area, from 66 to 77° N, was affected by an overall increase in AW flow from 3000 cal yr BP (before present) to the present. The long-term modulation of westerlies' strength and location, which are essentially driven by the dominant mode of the North Atlantic Oscillation (NAO), is thought to explain the observed dynamics of poleward AW flow. The same mechanism also reconciles the recorded opposite zonal shifts in the location of the Arctic front between the area off western Norway and the western Barents Sea–eastern Fram Strait region. The Little Ice Age (LIA) was governed by deteriorating conditions, with Arctic/Polar waters dominating in the surface off western Svalbard and western Barents Sea, possibly associated with both severe sea ice conditions and a strongly reduced AW strength. A sudden short pulse of resumed high WSC (West Spitsbergen Current) flow interrupted this cold spell in eastern Fram Strait from 330 to 410 cal yr BP. Our dataset not only confirms the high amplitude warming of surface waters at the turn of the 19th century off western Svalbard, it also shows that such a warming was primarily induced by an excess flow of AW which stands as unprecedented over the last 3000 yr.


2017 ◽  
Vol 30 (7) ◽  
pp. 2639-2654 ◽  
Author(s):  
Tingting Gong ◽  
Dehai Luo

In this paper, the lead–lag relationship between the Arctic sea ice variability over the Barents–Kara Sea (BKS) and Ural blocking (UB) in winter (DJF) ranging from 1979/80 to 2011/12 is examined. It is found that in a regressed DJF-mean field an increased UB frequency (days) corresponds to an enhanced sea ice decline over the BKS, while the high sea surface temperature over the BKS is accompanied by a significant Arctic sea ice reduction. Lagged daily regression and correlation reveal that the growth and maintenance of the UB that is related to the positive North Atlantic Oscillation (NAO+) through the negative east Atlantic/west Russia (EA/WR−) wave train is accompanied by an intensified negative BKS sea ice anomaly, and the BKS sea ice reduction lags the UB pattern by about four days. Because the intensified UB pattern occurs together with enhanced downward infrared radiation (IR) associated with the intensified moisture flux convergence and total column water over the BKS, the UB pattern contributes significantly to the BKS sea ice decrease on a time scale of weeks through intensified positive surface air temperature (SAT) anomalies resulting from enhanced downward IR. It is also found that the BKS sea ice decline can persistently maintain even when the UB has disappeared, thus indicating that the UB pattern is an important amplifier of the BKS sea ice reduction. Moreover, it is demonstrated that the EA/WR− wave train formed by the combined NAO+ and UB patterns is closely related to the amplified warming over the BKS through the strengthening (weakening) of mid-to-high-latitude westerly wind in the North Atlantic (Eurasia).


2018 ◽  
Vol 12 (9) ◽  
pp. 3017-3032 ◽  
Author(s):  
Robert Ricker ◽  
Fanny Girard-Ardhuin ◽  
Thomas Krumpen ◽  
Camille Lique

Abstract. Sea ice volume export through the Fram Strait represents an important freshwater input to the North Atlantic, which could in turn modulate the intensity of the thermohaline circulation. It also contributes significantly to variations in Arctic ice mass balance. We present the first estimates of winter sea ice volume export through the Fram Strait using CryoSat-2 sea ice thickness retrievals and three different ice drift products for the years 2010 to 2017. The monthly export varies between −21 and −540 km3. We find that ice drift variability is the main driver of annual and interannual ice volume export variability and that the interannual variations in the ice drift are driven by large-scale variability in the atmospheric circulation captured by the Arctic Oscillation and North Atlantic Oscillation indices. On shorter timescale, however, the seasonal cycle is also driven by the mean thickness of exported sea ice, typically peaking in March. Considering Arctic winter multi-year ice volume changes, 54  % of their variability can be explained by the variations in ice volume export through the Fram Strait.


2013 ◽  
Vol 10 (9) ◽  
pp. 15077-15106 ◽  
Author(s):  
C. V. Dylmer ◽  
J. Giraudeau ◽  
V. Hanquiez ◽  
K. Husum

Abstract. Extant coccolithophores and their relation to the governing oceanographic features in the northern North Atlantic were investigated along two zonal transects of surface water sampling, both conducted during summer 2011 and fall 2007. The northern transects crossed Fram Strait and its two opposing boundary currents (West Spitsbergen Current and East Greenland Current), while the southern transects sampled the Norwegian and Iceland Seas (passing the island Jan Mayen) from the Lofoten Islands to the continental margin off Eastern Greenland. The distribution of the dominant coccolithophore species Emiliania huxleyi and Coccolithus pelagicus is discussed in view of both the surface hydrology at the time of sampling and the structure of the surface mixed layer. Remote-sensing images as well as CTD and ARGO profiles are used to constrain the physico-chemical state of the surface water at the time of sampling. Both transects were characterized by strong seasonal differences in bulk coccolithophore standing stocks with maximum values of 53 × 103 cells L−1 for the northern transect and 72 × 103 cells L−1 for the southern transect in fall and summer, respectively. The highest recorded bulk cell densities are essentially explained by E. huxleyi. This species shows a zonal shift in peak abundance in the Norwegian-Iceland Seas from a summer maximum in the Lofoten gyre to peak cell densities around the island Jan Mayen in fall. Vertical mixing of Atlantic waters west of Lofoten Island, a phenomenom related to pervasive summer large scale atmospheric changes in the eastern Nordic Seas, on one hand, and strengthened influence of melt-water and related surface water stratification around the island Jan Mayen during fall, on the other hand, explains the observed seasonal migration of the E. huxleyi peak production area, as well as the seasonal change in dominating species within the Iceland Sea. In addition our datasets are indicative of a well-defined maximum boundary temperature of 6 °C for the production of C. pelagicus in the northern North Atlantic. The Fram Strait transects provides, to our knowledge, a first view of the zonal distribution of extant coccolithophores in this remote setting during summer and fall. Our datasets are indicative of a seasonal change in the species community from an E. huxleyi-dominated assemblage during summer to a C. pelagicus-rich population during fall. Here, higher irradiance and increased Atlantic water influence during summer favored the production of the opportunistic species E. huxleyi close to the Arctic Front, whereas the peak production area during fall, with high concentrations of C. pelagicus, lays in true Arctic/Polar waters.


Sign in / Sign up

Export Citation Format

Share Document