scholarly journals Local patterns of arbuscular mycorrhizal fungal diversity and community structure in a natural Toona ciliata var. pubescens forest in South Central China

PeerJ ◽  
2021 ◽  
Vol 9 ◽  
pp. e11331
Author(s):  
Jianfeng Pan ◽  
Qiong Wang ◽  
Xiaoyan Guo ◽  
Xueru Jiang ◽  
Qiangqiang Cheng ◽  
...  
Keyword(s):  
Relative Abundance ◽  
Tree Species ◽  
Mycorrhizal Fungi ◽  
Natural Regeneration ◽  
High Throughput Sequencing ◽  
Rhizosphere Soil ◽  
Arbuscular Mycorrhizal ◽  
Central China ◽  
South Central ◽  
Toona Ciliata

Toona ciliata var. pubescens (Toona in Meliaceae) (Tc) is listed as an endangered species, and there are natural regeneration obstacles due to its long-term excessive exploitation and utilization. Arbuscular mycorrhizal fungi (AMF) can produce beneficial effects for plant growth and natural regeneration. However, the characteristics of the AMF community in natural Tc forests are poorly understood. The Illumina PE250 high-throughput sequencing method was used to study the characteristics of the AMF community in the rhizosphere soil and roots associated with three dominant tree species (Tc; Padus buergeriana, Pb; and Maesa japonica, Mj) in a natural Tc forest in Guanshan National Natural Reserve, South Central China. The results found that Glomeraceae was the most abundant AMF family in the rhizosphere soil and roots. Moreover, the relative abundance of Archaeosporaceae in rhizosphere soil was significantly larger than that in the roots; in contrast, the relative abundance of Glomeraceae in rhizosphere soil was significantly lower than that in the roots (p < 0.05). Regarding different tree species, the relative abundances of Acaulosporaceae and Geosiphonaceae were larger in Mj and Tc than in Pb. AMF operational taxonomic units (OTUs) were 1.30-, 1.43-, and 1.71-fold higher in the Tc, Pb, and Mj rhizosphere soil, respectively, than in the corresponding roots. Nevertheless, higher AMF community richness was found in the roots compared to that in the rhizosphere soil based on the Chao index. This finding indicated that AMF of a relatively high aggregation degree were in roots, and more AMF groups with relatively low abundance occurred in the rhizosphere soil, which correspondingly lowered the calculated richness index of the AMF community. A redundancy analysis showed that different soil chemical properties impacted variations in the AMF community characteristics differently. This study has great significance for the interpretation of AMF diversity survey and the application design of AMF in vegetation restoration.

scholarly journals Urbanization pressures alter tree rhizosphere microbiomes

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Carl L. Rosier ◽  
Shawn W. Polson ◽  
Vincent D’Amico ◽  
Jinjun Kan ◽  
Tara L. E. Trammell
Keyword(s):  
Organic Matter ◽  
Relative Abundance ◽  
Tree Species ◽  
High Throughput Sequencing ◽  
Regional Climate ◽  
Keystone Species ◽  
Fagus Grandifolia ◽  
Yellow Poplar ◽  
Individual Tree ◽  
Structural Formation

AbstractThe soil microbial community (SMC) provides critical ecosystem services including organic matter decomposition, soil structural formation, and nutrient cycling. Studies suggest plants, specifically trees, act as soil keystone species controlling SMC structure via multiple mechanisms (e.g., litter chemistry, root exudates, and canopy alteration of precipitation). Tree influence on SMC is shaped by local/regional climate effects on forested environments and the connection of forests to surrounding landscapes (e.g., urbanization). Urban soils offer an ideal analog to assess the influence of environmental conditions versus plant species-specific controls on SMC. We used next generation high throughput sequencing to characterize the SMC of specific tree species (Fagus grandifolia [beech] vs Liriodendron tulipifera [yellow poplar]) across an urban–rural gradient. Results indicate SMC dissimilarity within rural forests suggests the SMC is unique to individual tree species. However, greater urbanization pressure increased SMC similarity between tree species. Relative abundance, species richness, and evenness suggest that increases in similarity within urban forests is not the result of biodiversity loss, but rather due to greater overlap of shared taxa. Evaluation of soil chemistry across the rural–urban gradient indicate pH, Ca+, and organic matter are largely responsible for driving relative abundance of specific SMC members.

Grazing intensity rather than host plant’s palatability shape the community of arbuscular mycorrhizal fungi in a steppe grassland

2021 ◽  
Author(s):  
Maede Faghihinia ◽  
Yi Zou ◽  
Yongfei Bai ◽  
Martin Dudáš ◽  
Rob Marrs ◽  
...  
Keyword(s):  
Arbuscular Mycorrhizal Fungi ◽  
Community Composition ◽  
Mycorrhizal Fungi ◽  
Rhizosphere Soil ◽  
Grazing Intensity ◽  
Arbuscular Mycorrhizal ◽  
Grass Species ◽  
Α Diversity ◽  
Steppe Grassland

Abstract Arbuscular mycorrhizal fungi (AMF) are the predominant type of mycorrhizal fungi in roots and rhizosphere soil of grass species worldwide. Grasslands are currently experiencing increasing grazing pressure, but it is not yet clear how grazing intensity and host plant grazing preference by large herbivores interact with soil- and root-associated AMF communities. Here, we tested whether the diversity and community composition of AMF in the roots and rhizosphere soil of two dominant perennial grasses grazed differently by livestock change in response to grazing intensity. We conducted a study in a long-term field experiment in which seven levels of field-manipulated grazing intensities were maintained for 13 years in a typical steppe grassland in northern China. We extracted DNA from the roots and rhizosphere soil of two dominant grasses, Leymus chinense (Trin.) Tzvel. and Stipa grandis P. Smirn, with contrasting grazing preference by sheep. AMF DNA from root and soil samples were then subjected to molecular analysis. Our results showed that AMF α-diversity (richness) at the virtual taxa (VT) level varied as a function of grazing intensity. Different VTs showed completely different responses along the gradient, one increasing, one decreasing and others showing no response. Glomeraceae was the most abundant AMF family along the grazing gradient, which fits well with the theory of disturbance tolerance of this group. In addition, sheep grazing preference for host plants did not explain a considerable variation in AMF α-diversity. However, the two grass species exhibited different community composition in their roots and rhizosphere soils. Roots exhibited a lower α-diversity and higher β-diversity within the AMF community than soils. Overall, our results suggest that long-term grazing intensity might have changed the abundance of functionally-diverse AMF taxa in favor of those with disturbance-tolerant traits. We suggest our results would be useful in informing the choice of mycorrhizal fungi indicator variables when assessing the impacts of grassland management choices on grassland ecosystem functioning.

scholarly journals Novel Approach to Study the Diversity of Soil Microbial Communities in Qatar

2020 ◽  
Author(s):  
Jane Oja ◽  
Sakeenah Adenan ◽  
Abdel-Fattah Talaat ◽  
Juha Alatalo
Keyword(s):  
Microbial Communities ◽  
High Throughput ◽  
Mycorrhizal Fungi ◽  
High Throughput Sequencing ◽  
Soil Microbial Communities ◽  
Arbuscular Mycorrhizal ◽  
Soil Microbial ◽  
Fungal Abundance ◽  
Novel Approach ◽  
Soil Climate

A broad diversity of microorganisms can be found in soil, where they are essential for nutrient cycling and energy transfer. Recent high-throughput sequencing methods have greatly advanced our knowledge about how soil, climate and vegetation variables structure the composition of microbial communities in many world regions. However, we are lacking information from several regions in the world, e.g. Middle-East. We have collected soil from 19 different habitat types for studying the diversity and composition of soil microbial communities (both fungi and bacteria) in Qatar and determining which edaphic parameters exert the strongest influences on these communities. Preliminary results indicate that in overall bacteria are more abundant in soil than fungi and few sites have notably higher abundance of these microbes. In addition, we have detected some soil patameters, which tend to have reduced the overall fungal abundance and enhanced the presence of arbuscular mycorrhizal fungi and N-fixing bacteria. More detailed information on the diversity and composition of soil microbial communities is expected from the high-throughput sequenced data.

scholarly journals Invasion of a xeric forest by an exotic tree species in Argentina: Impacts on the diversity of arbuscular mycorrhizal fungi and pre-existing mutualistic relationships

2021 ◽  
Vol 35 (2) ◽  
pp. 269-275
Author(s):  
Camila Abarca ◽  
Marcelo Daniel Barrera ◽  
Marta Cabello ◽  
Fabricio Valdés ◽  
María Silvana Velázquez
Keyword(s):  
Arbuscular Mycorrhizal Fungi ◽  
Tree Species ◽  
Mycorrhizal Fungi ◽  
Arbuscular Mycorrhizal ◽  
Exotic Tree

scholarly journals Effects of Arbuscular Mycorrhizal Fungi on Root Growth and Architecture of Tulip Gesneriana

Land Science ◽  
2020 ◽  
Vol 2 (2) ◽  
pp. p60
Author(s):  
Hongna Mu ◽  
Lei Fan ◽  
Shaohua Zhu ◽  
Taoze Sun
Keyword(s):  
Arbuscular Mycorrhizal Fungi ◽  
Mycorrhizal Fungi ◽  
Theoretical Basis ◽  
Rhizosphere Soil ◽  
Arbuscular Mycorrhizal ◽  
Mineral Nutrients ◽  
Root Diameter ◽  
Symbiotic Relationship ◽  
Host Root ◽  
Ecological Values

Arbuscular mycorrhizal fungi(AMF) can promote the absorption of soil water and mineral nutrients, improve photosynthesis, and make host attain higher quality finally by establishing symbiotic relationship between AMF and host root. To improve Tulip gesneriana quality have practical meaning under no bad affect to cultivation soil, in the light of its economical and ecological values. However, some AMF may be diverse from others, the concrete function of AMF on commercial tulip varieties need to explore. Therefore, three different sets of  arbuscular mycorrhizal fungi were inoculated into tulip rhizosphere soil, which were set as 4(Diversispora versiformis), 7(Diversispora spurca) and 1 + 3 + 4 (Rhizophagus intraradias + Funneliformis mosseae + Diversispora versiformis), respectively. The results showed that the activity of most of the measured indices increased, the average root diameter and sucrose content decreased in those three mycorrhizal treatments. Our research provide some theoretical basis for the application of AMF on T.gesneriana ecological cultivation in future.

scholarly journals Aspects of arbuscular mycorrhizal fungi in an atlantic forest chronosequence parque estadual turístico do Alto Ribeira (petar), SP

2004 ◽  
Vol 4 (2) ◽  
pp. 1-15 ◽  
Author(s):  
Marcos P.M. Aidar ◽  
Rosilaine Carrenho ◽  
Carlos A. Joly
Keyword(s):  
Arbuscular Mycorrhizal Fungi ◽  
Atlantic Forest ◽  
Tree Species ◽  
Mycorrhizal Fungi ◽  
Late Phase ◽  
Arbuscular Mycorrhizal ◽  
Diversity Indices ◽  
Mycorrhizal Colonization ◽  
Wet Season ◽  
Generic Level

Mycorrhizal colonization was assessed in roots of trees within an Atlantic Forest chronosequence, located in the southeastern of São Paulo State, Brazil, inside Tourist State Park of the High Ribeira Valley (PETAR). The phytosociological survey was carried out in three adjacent areas, all on calcareous soil, which correspond to different time intervals during which they have been left abandoned following a slash-and-burn agricultural perturbation. Early Phase (EP) with 15 years; Mid Phase (MP) with 25 years; and Late Phase (LP) with more than 36 years without clear-cut. The inventory indicated a continuum of tree species substitution, which is dominated by species of Leguminosae, especially Piptadenia gonoacantha (Mart.) J.F. Macbr. (Mimosoideae) in the earlier successional phases. Mycorrhizal colonization, estimated by the occurrence of the mycorrhizal structures in the tree species roots, diminished during the season with less rain (winter), and showed no significant differences between successional phases in the wet season (summer). Rather, the mycorrhizal colonization was correlated with occurrence of the tree’s successional status: being positively correlated with occurrence of pioneer species, and negatively correlated with late secondary species. Mycorrhizal colonization was also correlated negatively with soil organic matter and base saturation. Twenty five species of arbuscular mycorrhizal fungi belonging to four genera were identified. Six species were only identified to generic level. The species Glomus etunicatum Becker & Gerd. represented 10% of the total number of spores and occurred in all phases and seasons, while the genus Glomus represented 57% of the total of spores found in the rhizosphere. The diversity indices evaluated for the mycohrriza community were: H’ = 2.3, J’ = 0.97 and R = 4.12. These results are a contribution to the knowledge of The Atlantic Forest biodiversity and may have implications to support programs regarding rehabilitation of degraded vegetation in one of the World’s most threatened Biomes.

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