scholarly journals ADID-UNET—a segmentation model for COVID-19 infection from lung CT scans

2021 ◽  
Vol 7 ◽  
pp. e349
Author(s):  
Alex Noel Joseph Raj ◽  
Haipeng Zhu ◽  
Asiya Khan ◽  
Zhemin Zhuang ◽  
Zengbiao Yang ◽  
...  
Keyword(s):  
Pulmonary Infection ◽  
State Of The Art ◽  
Lung Infection ◽  
Ct Scans ◽  
Dense Network ◽  
Dice Coefficient ◽  
Proposed Model ◽  
Edge Features ◽  
Lung Ct ◽  
Data Acquisition Process

Currently, the new coronavirus disease (COVID-19) is one of the biggest health crises threatening the world. Automatic detection from computed tomography (CT) scans is a classic method to detect lung infection, but it faces problems such as high variations in intensity, indistinct edges near lung infected region and noise due to data acquisition process. Therefore, this article proposes a new COVID-19 pulmonary infection segmentation depth network referred as the Attention Gate-Dense Network- Improved Dilation Convolution-UNET (ADID-UNET). The dense network replaces convolution and maximum pooling function to enhance feature propagation and solves gradient disappearance problem. An improved dilation convolution is used to increase the receptive field of the encoder output to further obtain more edge features from the small infected regions. The integration of attention gate into the model suppresses the background and improves prediction accuracy. The experimental results show that the ADID-UNET model can accurately segment COVID-19 lung infected areas, with performance measures greater than 80% for metrics like Accuracy, Specificity and Dice Coefficient (DC). Further when compared to other state-of-the-art architectures, the proposed model showed excellent segmentation effects with a high DC and F1 score of 0.8031 and 0.82 respectively.

P2P-COVID-GAN

2021 ◽  
Vol 17 (4) ◽  
pp. 101-118
Author(s):  
Nandhini Abirami ◽  
Durai Raj Vincent ◽  
Seifedine Kadry
Keyword(s):  
State Of The Art ◽  
Automatic Segmentation ◽  
Ct Images ◽  
Dice Coefficient ◽  
Computed Tomography Images ◽  
Proposed Model ◽  
Novel Method ◽  
Lung Infections ◽  
Lung Ct ◽  
Ct Slices

Early and automatic segmentation of lung infections from computed tomography images of COVID-19 patients is crucial for timely quarantine and effective treatment. However, automating the segmentation of lung infection from CT slices is challenging due to a lack of contrast between the normal and infected tissues. A CNN and GAN-based framework are presented to classify and then segment the lung infections automatically from COVID-19 lung CT slices. In this work, the authors propose a novel method named P2P-COVID-SEG to automatically classify COVID-19 and normal CT images and then segment COVID-19 lung infections from CT images using GAN. The proposed model outperformed the existing classification models with an accuracy of 98.10%. The segmentation results outperformed existing methods and achieved infection segmentation with accurate boundaries. The Dice coefficient achieved using GAN segmentation is 81.11%. The segmentation results demonstrate that the proposed model outperforms the existing models and achieves state-of-the-art performance.

scholarly journals A Hybrid-Attention Nested UNet for Nuclear Segmentation in Histopathological Images

2021 ◽  
Vol 8 ◽  
Author(s):  
Hongliang He ◽  
Chi Zhang ◽  
Jie Chen ◽  
Ruizhe Geng ◽  
Luyang Chen ◽  
...  
Keyword(s):  
Image Analysis ◽  
State Of The Art ◽  
The State ◽  
Dense Network ◽  
Crucial Step ◽  
Full Resolution ◽  
Proposed Model ◽  
Computer Aided ◽  
Histopathological Images ◽  
Nuclear Segmentation

Nuclear segmentation of histopathological images is a crucial step in computer-aided image analysis. There are complex, diverse, dense, and even overlapping nuclei in these histopathological images, leading to a challenging task of nuclear segmentation. To overcome this challenge, this paper proposes a hybrid-attention nested UNet (Han-Net), which consists of two modules: a hybrid nested U-shaped network (H-part) and a hybrid attention block (A-part). H-part combines a nested multi-depth U-shaped network and a dense network with full resolution to capture more effective features. A-part is used to explore attention information and build correlations between different pixels. With these two modules, Han-Net extracts discriminative features, which effectively segment the boundaries of not only complex and diverse nuclei but also small and dense nuclei. The comparison in a publicly available multi-organ dataset shows that the proposed model achieves the state-of-the-art performance compared to other models.

scholarly journals A deep learning algorithm to detect coronavirus (COVID-19) disease using CT images

2021 ◽  
Vol 7 ◽  
pp. e345
Author(s):  
Mojtaba Mohammadpoor ◽  
Mehran Sheikhi karizaki ◽  
Mina Sheikhi karizaki
Keyword(s):  
Deep Learning ◽  
Learning Algorithm ◽  
Screening Method ◽  
Ct Scans ◽  
X Rays ◽  
Deep Learning Algorithm ◽  
Fast Screening ◽  
Proposed Model ◽  
Deep Learning Neural Network ◽  
Lung Ct

Background COVID-19 pandemic imposed a lockdown situation to the world these past months. Researchers and scientists around the globe faced serious efforts from its detection to its treatment. Methods Pathogenic laboratory testing is the gold standard but it is time-consuming. Lung CT-scans and X-rays are other common methods applied by researchers to detect COVID-19 positive cases. In this paper, we propose a deep learning neural network-based model as an alternative fast screening method that can be used for detecting the COVID-19 cases by analyzing CT-scans. Results Applying the proposed method on a publicly available dataset collected of positive and negative cases showed its ability on distinguishing them by analyzing each individual CT image. The effect of different parameters on the performance of the proposed model was studied and tabulated. By selecting random train and test images, the overall accuracy and ROC-AUC of the proposed model can easily exceed 95% and 90%, respectively, without any image pre-selecting or preprocessing.

Enhanced context-aware recommendation using topic modeling and particle swarm optimization

2021 ◽  
pp. 1-16
Author(s):  
Ibtissem Gasmi ◽  
Mohamed Walid Azizi ◽  
Hassina Seridi-Bouchelaghem ◽  
Nabiha Azizi ◽  
Samir Brahim Belhaouari
Keyword(s):  
Topic Modeling ◽  
Latent Dirichlet Allocation ◽  
State Of The Art ◽  
Weighting Function ◽  
Contextual Factors ◽  
Pearson Correlation ◽  
Correlation Coefficients ◽  
Pso Algorithm ◽  
Context Aware ◽  
Proposed Model

Context-Aware Recommender System (CARS) suggests more relevant services by adapting them to the user’s specific context situation. Nevertheless, the use of many contextual factors can increase data sparsity while few context parameters fail to introduce the contextual effects in recommendations. Moreover, several CARSs are based on similarity algorithms, such as cosine and Pearson correlation coefficients. These methods are not very effective in the sparse datasets. This paper presents a context-aware model to integrate contextual factors into prediction process when there are insufficient co-rated items. The proposed algorithm uses Latent Dirichlet Allocation (LDA) to learn the latent interests of users from the textual descriptions of items. Then, it integrates both the explicit contextual factors and their degree of importance in the prediction process by introducing a weighting function. Indeed, the PSO algorithm is employed to learn and optimize weights of these features. The results on the Movielens 1 M dataset show that the proposed model can achieve an F-measure of 45.51% with precision as 68.64%. Furthermore, the enhancement in MAE and RMSE can respectively reach 41.63% and 39.69% compared with the state-of-the-art techniques.

scholarly journals A Deep Learning Approach to Predict Autism Spectrum Disorder Using Multisite Resting-State fMRI

2021 ◽  
Vol 11 (8) ◽  
pp. 3636
Author(s):  
Faria Zarin Subah ◽  
Kaushik Deb ◽  
Pranab Kumar Dhar ◽  
Takeshi Koshiba
Keyword(s):  
Autism Spectrum Disorder ◽  
Resting State ◽  
State Of The Art ◽  
Resting State Fmri ◽  
Autism Spectrum ◽  
Spectrum Disorder ◽  
Bootstrap Analysis ◽  
Proposed Model ◽  
Art Methods ◽  
The Mean

Autism spectrum disorder (ASD) is a complex and degenerative neuro-developmental disorder. Most of the existing methods utilize functional magnetic resonance imaging (fMRI) to detect ASD with a very limited dataset which provides high accuracy but results in poor generalization. To overcome this limitation and to enhance the performance of the automated autism diagnosis model, in this paper, we propose an ASD detection model using functional connectivity features of resting-state fMRI data. Our proposed model utilizes two commonly used brain atlases, Craddock 200 (CC200) and Automated Anatomical Labelling (AAL), and two rarely used atlases Bootstrap Analysis of Stable Clusters (BASC) and Power. A deep neural network (DNN) classifier is used to perform the classification task. Simulation results indicate that the proposed model outperforms state-of-the-art methods in terms of accuracy. The mean accuracy of the proposed model was 88%, whereas the mean accuracy of the state-of-the-art methods ranged from 67% to 85%. The sensitivity, F1-score, and area under receiver operating characteristic curve (AUC) score of the proposed model were 90%, 87%, and 96%, respectively. Comparative analysis on various scoring strategies show the superiority of BASC atlas over other aforementioned atlases in classifying ASD and control.

scholarly journals Fully automated preoperative segmentation of temporal bone structures from clinical CT scans

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
C. A. Neves ◽  
E. D. Tran ◽  
I. M. Kessler ◽  
N. H. Blevins
Keyword(s):  
Facial Nerve ◽  
Inner Ear ◽  
Temporal Bone ◽  
Hausdorff Distance ◽  
Sigmoid Sinus ◽  
Ct Scans ◽  
Automated Segmentation ◽  
Dice Coefficient ◽  
Lateral Skull Base ◽  
End To End

AbstractMiddle- and inner-ear surgery is a vital treatment option in hearing loss, infections, and tumors of the lateral skull base. Segmentation of otologic structures from computed tomography (CT) has many potential applications for improving surgical planning but can be an arduous and time-consuming task. We propose an end-to-end solution for the automated segmentation of temporal bone CT using convolutional neural networks (CNN). Using 150 manually segmented CT scans, a comparison of 3 CNN models (AH-Net, U-Net, ResNet) was conducted to compare Dice coefficient, Hausdorff distance, and speed of segmentation of the inner ear, ossicles, facial nerve and sigmoid sinus. Using AH-Net, the Dice coefficient was 0.91 for the inner ear; 0.85 for the ossicles; 0.75 for the facial nerve; and 0.86 for the sigmoid sinus. The average Hausdorff distance was 0.25, 0.21, 0.24 and 0.45 mm, respectively. Blinded experts assessed the accuracy of both techniques, and there was no statistical difference between the ratings for the two methods (p = 0.93). Objective and subjective assessment confirm good correlation between automated segmentation of otologic structures and manual segmentation performed by a specialist. This end-to-end automated segmentation pipeline can help to advance the systematic application of augmented reality, simulation, and automation in otologic procedures.

Equivariant Adversarial Network for Image-to-image Translation

2021 ◽  
Vol 17 (2s) ◽  
pp. 1-14
Author(s):  
Masoumeh Zareapoor ◽  
Jie Yang
Keyword(s):  
State Of The Art ◽  
Generative Models ◽  
Generative Model ◽  
Target Domain ◽  
Adversarial Network ◽  
Proposed Model ◽  
Image Translation ◽  
Great Performance ◽  
Representative Model ◽  
The Ideal

Image-to-Image translation aims to learn an image from a source domain to a target domain. However, there are three main challenges, such as lack of paired datasets, multimodality, and diversity, that are associated with these problems and need to be dealt with. Convolutional neural networks (CNNs), despite of having great performance in many computer vision tasks, they fail to detect the hierarchy of spatial relationships between different parts of an object and thus do not form the ideal representative model we look for. This article presents a new variation of generative models that aims to remedy this problem. We use a trainable transformer, which explicitly allows the spatial manipulation of data within training. This differentiable module can be augmented into the convolutional layers in the generative model, and it allows to freely alter the generated distributions for image-to-image translation. To reap the benefits of proposed module into generative model, our architecture incorporates a new loss function to facilitate an effective end-to-end generative learning for image-to-image translation. The proposed model is evaluated through comprehensive experiments on image synthesizing and image-to-image translation, along with comparisons with several state-of-the-art algorithms.

scholarly journals Motion correction for routine X-ray lung CT imaging

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Doil Kim ◽  
Jiyoung Choi ◽  
Duhgoon Lee ◽  
Hyesun Kim ◽  
Jiyoung Jung ◽  
...  
Keyword(s):  
Motion Estimation ◽  
Motion Correction ◽  
Ct Imaging ◽  
Motion Artifacts ◽  
Ct Scans ◽  
Breath Hold ◽  
X Ray ◽  
Wide Range ◽  
Thorax Ct ◽  
Lung Ct

AbstractA novel motion correction algorithm for X-ray lung CT imaging has been developed recently. It was designed to perform for routine chest or thorax CT scans without gating, namely axial or helical scans with pitch around 1.0. The algorithm makes use of two conjugate partial angle reconstruction images for motion estimation via non-rigid registration which is followed by a motion compensated reconstruction. Differently from other conventional approaches, no segmentation is adopted in motion estimation. This makes motion estimation of various fine lung structures possible. The aim of this study is to explore the performance of the proposed method in correcting the lung motion artifacts which arise even under routine CT scans with breath-hold. The artifacts are known to mimic various lung diseases, so it is of great interest to address the problem. For that purpose, a moving phantom experiment and clinical study (seven cases) were conducted. We selected the entropy and positivity as figure of merits to compare the reconstructed images before and after the motion correction. Results of both phantom and clinical studies showed a statistically significant improvement by the proposed method, namely up to 53.6% (p < 0.05) and up to 35.5% (p < 0.05) improvement by means of the positivity measure, respectively. Images of the proposed method show significantly reduced motion artifacts of various lung structures such as lung parenchyma, pulmonary vessels, and airways which are prominent in FBP images. Results of two exemplary cases also showed great potential of the proposed method in correcting motion artifacts of the aorta which is known to mimic aortic dissection. Compared to other approaches, the proposed method provides an excellent performance and a fully automatic workflow. In addition, it has a great potential to handle motions in wide range of organs such as lung structures and the aorta. We expect that this would pave a way toward innovations in chest and thorax CT imaging.

scholarly journals Improving Multilingual Sentence Embedding using Bi-directional Dual Encoder with Additive Margin Softmax

2019 ◽  
Author(s):  
Yinfei Yang ◽  
Gustavo Hernandez Abrego ◽  
Steve Yuan ◽  
Mandy Guo ◽  
Qinlan Shen ◽  
...  
Keyword(s):  
United Nations ◽  
State Of The Art ◽  
Cosine Similarity ◽  
Retrieval Task ◽  
Parallel Corpus ◽  
Similar Performance ◽  
Second Stage ◽  
Current State ◽  
Proposed Model ◽  
Document Level

In this paper, we present an approach to learn multilingual sentence embeddings using a bi-directional dual-encoder with additive margin softmax. The embeddings are able to achieve state-of-the-art results on the United Nations (UN) parallel corpus retrieval task. In all the languages tested, the system achieves P@1 of 86% or higher. We use pairs retrieved by our approach to train NMT models that achieve similar performance to models trained on gold pairs. We explore simple document-level embeddings constructed by averaging our sentence embeddings. On the UN document-level retrieval task, document embeddings achieve around 97% on P@1 for all experimented language pairs. Lastly, we evaluate the proposed model on the BUCC mining task. The learned embeddings with raw cosine similarity scores achieve competitive results compared to current state-of-the-art models, and with a second-stage scorer we achieve a new state-of-the-art level on this task.

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