scholarly journals Improving reproducibility of geospatial conference papers – lessons learned from a first implementation of reproducibility reviews

2020 ◽  
Author(s):  
Daniel Nüst ◽  
Frank Ostermann ◽  
Carlos Granell ◽  
Alexander Kmoch

In an attempt to increase the reproducibility of contributions to a long-running and established geospatial conference series, the 23rd AGILE Conference on Geographic Information Science 2020 (https://agile-online.org/conference-2020) for the first time provided guidelines on preparing reproducible papers (Nüst et al., 2020) and appointed a reproducibility committee to evaluate computational workflows of accepted papers ( https://www.agile-giscience-series.net/review_process.html). Here, the committee’s members report on the lessons learned from reviewing 23 accepted full papers and outline future plans for the conference series. In summary, six submissions were partially reproduced by reproducibility reviewers, whose reports are published openly on OSF ( https://osf.io/6k5fh/). These papers are promoted with badges on the proceedings’ website (https://agile-giss.copernicus.org/articles/1/index.html). Compared to previous years’ submissions (cf. Nüst et al. 2018), the guidelines and increased community awareness markedly improved reproducibility. However, the reproduction attempts also revealed problems, most importantly insufficient documentation. This was partly mitigated by the non-blind reproducibility review, conducted after paper acceptance, where interaction between reviewers and authors can provide the input and attention needed to increase reproducibility. However, the reviews also showed that anonymisation and public repositories, when properly documented, can enable a successful reproduction without interaction, as was the case with one manuscript. Individual and organisational challenges due to the COVID-19 pandemic and the conference’s eventual cancellation increased the teething problems. Nevertheless, also under normal circumstances, future iterations will have to reduce the reviewer’s efforts to be sustainable, ideally by more readily executable workflows and a larger reproducibility committee. Furthermore, we discuss changes to the reproducibility review process and their challenges. Reproducibility reports could be made available to “regular” reviewers, or the reports could be considered equally for acceptance/rejection decisions. Insufficient information or invalid arguments for not disclosing material could then lead to a submission being rejected or not being sent out to peer review. Further organisational improvements are a publication of reviewers’ activities in public databases, making the guidelines mandatory, and collecting data on used tools/repositories, spent efforts, and communications. Finally, we summarise the revision of the guidelines, including their new section for reproducibility reviewers, and the status of the initiative “Reproducible Publications at AGILE Conferences” (https://reproducible-agile.github.io/initiative/), which we connect to related undertakings such as CODECHECK (Eglen et al., 2019). The AGILE Conference’s experiences may help other communities to transition towards more open and reproducible research publications.

2018 ◽  
Author(s):  
Daniel Nüst ◽  
Carlos Granell ◽  
Barbara Hofer ◽  
Markus Konkol ◽  
Frank O Ostermann ◽  
...  

The demand for reproducibility of research is on the rise in disciplines concerned with data analysis and computational methods. In this work existing recommendations for reproducible research are reviewed and translated into criteria for assessing reproducibility of articles in the field of geographic information science (GIScience). Using a sample of GIScience research from the Association of Geographic Information Laboratories in Europe (AGILE) conference series, we assess the current state of reproducibility of publications in this field. Feedback on the assessment was collected by surveying the authors of the sample papers. The results show the reproducibility levels are low. Although authors support the ideals, the incentives are too small. Therefore we propose concrete actions for individual researchers and the AGILE conference series to improve transparency and reproducibility, such as imparting data and software skills, an award, paper badges, author guidelines for computational research, and Open Access publications.


PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e5072 ◽  
Author(s):  
Daniel Nüst ◽  
Carlos Granell ◽  
Barbara Hofer ◽  
Markus Konkol ◽  
Frank O. Ostermann ◽  
...  

The demand for reproducible research is on the rise in disciplines concerned with data analysis and computational methods. Therefore, we reviewed current recommendations for reproducible research and translated them into criteria for assessing the reproducibility of articles in the field of geographic information science (GIScience). Using this criteria, we assessed a sample of GIScience studies from the Association of Geographic Information Laboratories in Europe (AGILE) conference series, and we collected feedback about the assessment from the study authors. Results from the author feedback indicate that although authors support the concept of performing reproducible research, the incentives for doing this in practice are too small. Therefore, we propose concrete actions for individual researchers and the GIScience conference series to improve transparency and reproducibility. For example, to support researchers in producing reproducible work, the GIScience conference series could offer awards and paper badges, provide author guidelines for computational research, and publish articles in Open Access formats.


Author(s):  
Daniel Nüst ◽  
Carlos Granell ◽  
Barbara Hofer ◽  
Markus Konkol ◽  
Frank O Ostermann ◽  
...  

The demand for reproducibility of research is on the rise in disciplines concerned with data analysis and computational methods. In this work existing recommendations for reproducible research are reviewed and translated into criteria for assessing reproducibility of articles in the field of geographic information science (GIScience). Using a sample of GIScience research from the Association of Geographic Information Laboratories in Europe (AGILE) conference series, we assess the current state of reproducibility of publications in this field. Feedback on the assessment was collected by surveying the authors of the sample papers. The results show the reproducibility levels are low. Although authors support the ideals, the incentives are too small. Therefore we propose concrete actions for individual researchers and the AGILE conference series to improve transparency and reproducibility, such as imparting data and software skills, an award, paper badges, author guidelines for computational research, and Open Access publications.


2018 ◽  
Vol 2 (S1) ◽  
pp. 2-2
Author(s):  
Margaret Schneider ◽  
Tanya Mathew ◽  
Madeline Gibson ◽  
Christine Zeller ◽  
Hardeep Ranu ◽  
...  

OBJECTIVES/SPECIFIC AIMS: To share the experience gained and lessons learned from a cross CTSA collaborative effort to improve the review process for Pilot Studies awards by exchanging external reviewers. METHODS/STUDY POPULATION: The CEREC process is managed by a web-based tracking system that enables all participating members to view at any time the status of reviewer invitations. This online tracking system is supplemented by monthly conference calls during which new calls for proposals are announced and best practices are identified. Each CTSA hub customized the CEREC model based on their individual pilot program needs and review process. Some hubs have supplemented their internal reviews by only posting proposals on CEREC that lack reviewers with significant expertise within their institutions. Other hubs have requested 1–3 external reviewers for each of their proposals or a selection of most promising proposals. In anticipation of potential scoring discrepancies, several hubs added a self-assessment of reviewer expertise and confidence at the end of each review. If a proposal is on the cusp of fundability, then the reviewers’ self-assessment may be taken into account. In addition to the tracking data collected by the online system, a survey of CEREC reviewers was conducted using Qualtrics. RESULTS/ANTICIPATED RESULTS: Across the 144 proposals submitted for reviews, CEREC members issued a total of 396 email invitations to potential reviewers. The number of invitations required to yield a reviewer ranged from 1 to 17. A total of 224 invitations were accepted, for a response rate of 56%. An external reviewer was unable to be located for 5 proposals (3%). Ultimately, 196 completed reviews were submitted, for a completion rate of 87%. The most common reasons for non-completion after acceptance of an invitation included reviewer illness and discovery of a conflict of interest. CEREC members found the process extremely useful for locating qualified reviewers who were not in conflict with the proposal being reviewed and for identifying reviewers for proposals related to highly specialized topics. The survey of CEREC reviewers found that they generally found the process easy to navigate and intellectually rewarding. Most would be willing to review additional CEREC proposals in the future. External reviewer comments and scores were generally in agreement with internal reviewer comments and scores. Thus, hubs could factor in external reviewer scores equally to internal reviewer scores, without feeling compelled to calibrate external reviewer scores. Overall, through CEREC external reviewers, mainly due to the stronger matching of scientific expertise and reduction of potential bias, the quality of reviews appear to be higher and more pertinent. DISCUSSION/SIGNIFICANCE OF IMPACT: Some aspects of the process emerged that will be addressed in the future to make the system more efficient. One issue that arose was the burden on the system during multiple simultaneous calls for proposals. Future plans call for harmonizing review cycles to avoid these overlaps. Efficiency also will be improved by optimizing the timing of reviewer invitations to minimize the probability of obtaining more reviews than requested. In addition to the original objective of CEREC, the collaboration has led to additional exchange of information regarding methods and processes related to running the Pilot Funding programs. For example, one site developed a method using REDCap to manage their reviewer database; an innovation that is being shared with the other CEREC partners. Another site has a well-developed process for integrating community reviewers into their review process and is sharing their training materials with the remaining CEREC partners.


Author(s):  
Michael Trizna ◽  
Leah Wasser ◽  
David Nicholson

pyOpenSci (short for Python Open Science), funded by the Alfred P. Sloan Foundation, is building a diverse community that supports well documented, open source Python software that enables open reproducible science. pyOpenSci will work with the community to openly develop best practice guidelines and open standards for scientific Python software, which will be reinforced through a community-led peer review process and training. Packages that complete the peer review process become a part of the pyOpenSci ecosystem, where maintenance can be shared to ensure longevity and stability in code. pyOpenSci packages are also eligible for a “fast tracked” acceptance to JOSS (Journal of Open Source Software). In addition, we provide review for open science tools that would be of interest to TDWG members but are not within scope for JOSS, such as API (Application Programming Interface) wrappers. pyOpenSci is built on top of the successful model of rOpenSci, founded in 2011, which has fostered the development of several useful biodiversity informatics R packages. The pyOpenSci team looks to following the lessons learned by rOpenSci, to create a similarly successful community. We invite TDWG members developing open source software tools in Python to become part of the pyOpenSci community.


2021 ◽  
Vol 932 (1) ◽  
pp. 011002

All papers published in this volume of IOP Conference Series: Earth and Environmental Science have been peer reviewed through processes administered by the Editors. Reviews were conducted by expert referees to the professional and scientific standards expected of a proceedings journal published by IOP Publishing. • Type of peer review: Single-blind • Conference submission management system: Submissions were received through conference e-mail • Number of submissions received: 19 • Number of submissions sent for review: 18 • Number of submissions accepted: 12 • Acceptance Rate (Number of Submissions Accepted / Number of Submissions Received X 100): 63% • Average number of reviews per paper: 1 • Total number of reviewers involved: 12 • Any additional info on review process: 1) The submitted manuscripts were collected by the scientific committee for review the format, language and suitability of the conference scope. The review was carried out by one external reviewer. Editors supervised the review process. Reviewer report included such criteria as originality, significance of content, quality of presentation, scientific soundness, interest to the readers, and recommendation for the paper. 2) If there were any discrepancies, the manuscript was sent back to authors through email. Authors were requested to make revisions based on the input given by the reviewer. Authors revised the paper and sent it back to editor for further evaluation. The editors decided the status of paper, accepted or should be send back to reviewer for the second round of review. 3) As the final stage, the submitted papers were then subjected to proofreading, grammar and checking for similarity. Subsequently, all papers were prepared for submission to IOP Conference Series. • Contact person for queries: Name: Eldar Kurbanov Affiliation: Volga State University of Technology Email: [email protected]


Author(s):  
Rachel Ablow

The nineteenth century introduced developments in science and medicine that made the eradication of pain conceivable for the first time. This new understanding of pain brought with it a complex set of moral and philosophical dilemmas. If pain serves no obvious purpose, how do we reconcile its existence with a well-ordered universe? Examining how writers of the day engaged with such questions, this book offers a compelling new literary and philosophical history of modern pain. The book provides close readings of novelists Charlotte Brontë and Thomas Hardy and political and natural philosophers John Stuart Mill, Harriet Martineau, and Charles Darwin, as well as a variety of medical, scientific, and popular writers of the Victorian age. The book explores how discussions of pain served as investigations into the status of persons and the nature and parameters of social life. No longer conceivable as divine trial or punishment, pain in the nineteenth century came to seem instead like a historical accident suggesting little or nothing about the individual who suffers. A landmark study of Victorian literature and the history of pain, the book shows how these writers came to see pain as a social as well as a personal problem. Rather than simply self-evident to the sufferer and unknowable to anyone else, pain was also understood to be produced between persons—and even, perhaps, by the fictions they read.


2019 ◽  
Vol 12 (3) ◽  
pp. 133-166 ◽  
Author(s):  
Alexander Gradel ◽  
Gerelbaatar Sukhbaatar ◽  
Daniel Karthe ◽  
Hoduck Kang

The natural conditions, climate change and socio-economic challenges related to the transformation from a socialistic society towards a market-driven system make the implementation of sustainable land management practices in Mongolia especially complicated. Forests play an important role in land management. In addition to providing resources and ecosystem functions, Mongolian forests protect against land degradation.We conducted a literature review of the status of forest management in Mongolia and lessons learned, with special consideration to halting deforestation and degradation. We grouped our review into seven challenges relevant to developing regionally adapted forest management systems that both safeguard forest health and consider socio-economic needs. In our review, we found that current forest management in Mongolia is not always sustainable, and that some practices lack scientific grounding. An overwhelming number of sources noticed a decrease in forest area and quality during the last decades, although afforestation initiatives are reported to have increased. We found that they have had, with few exceptions, only limited success. During our review, however, we found a number of case studies that presented or proposed promising approaches to (re-)establishing and managing forests. These studies are further supported by a body of literature that examines how forest administration, and local participation can be modified to better support sustainable forestry. Based on our review, we conclude that it is necessary to integrate capacity development and forest research into holistic initiatives. A special focus should be given to the linkages between vegetation cover and the hydrological regime.


2018 ◽  
Vol 33 (2) ◽  
Author(s):  
Mbuzeni Mathenjwa

The history of local government in South Africa dates back to a time during the formation of the Union of South Africa in 1910. With regard to the status of local government, the Union of South Africa Act placed local government under the jurisdiction of the provinces. The status of local government was not changed by the formation of the Republic of South Africa in 1961 because local government was placed under the further jurisdiction of the provinces. Local government was enshrined in the Constitution of the Republic of South Africa arguably for the first time in 1993. Under the interim Constitution local government was rendered autonomous and empowered to regulate its affairs. Local government was further enshrined in the final Constitution of 1996, which commenced on 4 February 1997. The Constitution refers to local government together with the national and provincial governments as spheres of government which are distinctive, interdependent and interrelated. This article discusses the autonomy of local government under the 1996 Constitution. This it does by analysing case law on the evolution of the status of local government. The discussion on the powers and functions of local government explains the scheme by which government powers are allocated, where the 1996 Constitution distributes powers to the different spheres of government. Finally, a conclusion is drawn on the legal status of local government within the new constitutional dispensation.


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