scholarly journals Molecular Dynamics Simulation of the Effect of Terahertz Waves on the Secondary Structure of Potassium Channel Proteins

2021 ◽  
Vol 0 (0) ◽  
pp. 0-0
Author(s):  
◽  
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulation ◽  
Secondary Structure ◽  
Potassium Channel ◽  
Dynamics Simulation ◽  
Terahertz Waves ◽  
Channel Proteins

Molecular Dynamics Study on an Adipokinetic Hormone Peptide in Aqueous Solution

2000 ◽  
Vol 55 (1-2) ◽  
pp. 125-128 ◽  
Author(s):  
Igor Z. Zubrzycki
Keyword(s):  
Molecular Dynamics ◽  
Aqueous Solution ◽  
Molecular Dynamics Simulation ◽  
Secondary Structure ◽  
Room Temperature ◽  
Dynamics Simulation ◽  
Red Pigment ◽  
Adipokinetic Hormone ◽  
Extended Conformation ◽  
Flying Insects

Lom-AKH-I is a member of the adipokinetic hormone/ red pigment concentrating hormone (AKH / RPCH) family of peptides found in flying insects. A molecular dynamics simulation at room temperature (293 K) in water has been performed to survey the folding path of the Lom-AKH-I peptide in water and to establish the secondary structure of Lom-AKH-I. The obtained results indicate the presence of an undefined extended conformation.

scholarly journals Molecular Dynamics Simulation of the Kv1.2 Potassium Channel

2009 ◽  
Vol 96 (3) ◽  
pp. 191a-192a
Author(s):  
Fatemeh Khalili-Araghi ◽  
Vishwanath Jogini ◽  
Vladimir Yarov-Yarovoy ◽  
Emad Tajkhorshid ◽  
Benoit Roux ◽  
...  
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulation ◽  
Potassium Channel ◽  
Dynamics Simulation

Insights into the secondary structures of lactam N-substituted stapled peptides

2020 ◽  
Vol 18 (20) ◽  
pp. 3838-3842
Author(s):  
Aldrin V. Vasco ◽  
Celia G. Moya ◽  
Stefan Gröger ◽  
Wolfgang Brandt ◽  
Jochen Balbach ◽  
...  
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulation ◽  
Secondary Structure ◽  
Secondary Structures ◽  
Dynamics Simulation ◽  
Stapled Peptides ◽  
Lactam Bridge ◽  
Cd Studies

NMR and CD studies together with molecular dynamics simulation reveal new insights into the s-cis/s-trans isomerism and the effect of the lactam bridge N-substituent on the secondary structure of stapled peptides.

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