scholarly journals Genetic diversity of the chloroplast genome region from trn L (UAA ) 3' exon · trn F (GAA) and atp B · rbc L of Primula cuneifolia Ledeb. var. cuneifolia in Rausuko and Furanodake

2017 ◽  
Vol 43 (1) ◽  
pp. 162-167
Author(s):  
Madoka SAWADA ◽  
Takahiro WAGATSUMA ◽  
Yoshihiro OKAMOTO ◽  
Shiro MORI
Keyword(s):  
Genetic Diversity ◽  
Chloroplast Genome ◽  
Genome Region

scholarly journals Genetic Diversity and Population Structure of Wild Sunflower (Helianthus annuus L.) in Argentina: Reconstructing Its Invasion History

2019 ◽  
Vol 110 (6) ◽  
pp. 746-759 ◽  
Author(s):  
Fernando Hernández ◽  
Alejandro Presotto ◽  
Mónica Poverene ◽  
Jennifer R Mandel
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Chloroplast Genome ◽  
Helianthus Annuus ◽  
Ecological Factors ◽  
Invasion History ◽  
Phenotypic Data ◽  
Wild Sunflower ◽  
Multiple Introductions ◽  
Helianthus Annuus L

Abstract Studying the levels and patterns of genetic diversity of invasive populations is important to understand the evolutionary and ecological factors promoting invasions and for better designing preventive and control strategies. Wild sunflower (Helianthus annuus L.) is native to North America and was introduced, and has become invasive, in several countries, including Argentina (ARG). Here, using classical population genetic analyses and approximate Bayesian computation (ABC) modeling, we studied the invasion history of wild sunflower in ARG. We analyzed 115 individuals belonging to 15 populations from ARG (invasive range) and United States (US, native range) at 14 nuclear and 3 chloroplast simple sequence repeat markers along with 23 phenotypic variables. Populations from ARG showed similar levels of nuclear genetic diversity to US populations and higher genetic diversity in the chloroplast genome, indicating no severe genetic bottlenecks during the invasion process. Bayesian clustering analysis, based on nuclear markers, suggests the presence of 3 genetic clusters, all present in both US and ARG. Discriminant analysis of principal components (DAPC) detected an overall low population structure between central US and ARG populations but separated 2 invasive populations from the rest. ABC modeling supports multiple introductions but also a southward dispersal within ARG. Genetic and phenotypic data support the central US as a source of introduction while the source of secondary introductions could not be resolved. Finally, using genetic markers from the chloroplast genome, we found lower population structure in ARG when compared with US populations, suggesting a role for seed-mediated gene flow in Argentina.

scholarly journals Genetic diversity of the chloroplast genome of Lathyrus japonicus Willd. in Hokkaido

2019 ◽  
Vol 45 (1) ◽  
pp. 57-61
Author(s):  
ITO Tokiko ◽  
WAGATSUMA Takahiro ◽  
OKAMOTO Yoshihiro ◽  
MORI Shiro
Keyword(s):  
Genetic Diversity ◽  
Chloroplast Genome

scholarly journals Population structure and genetic diversity of watermelon (Citrullus lanatus) based on SNP of chloroplast genome

3 Biotech ◽  
2020 ◽  
Vol 10 (8) ◽  
Author(s):  
Haonan Cui ◽  
Zhuo Ding ◽  
Qianglong Zhu ◽  
Yue Wu ◽  
Peng Gao
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Chloroplast Genome ◽  
Citrullus Lanatus

Development of chloroplast microsatellite markers for identification of Glycyrrhiza species

2018 ◽  
Vol 17 (1) ◽  
pp. 95-98 ◽  
Author(s):  
Kyung Jun Lee ◽  
Sebastin Raveendar ◽  
Ji Seon Choi ◽  
Jinsu Gil ◽  
Jeong Hoon Lee ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Microsatellite Markers ◽  
Traditional Medicine ◽  
Chloroplast Genome ◽  
Diversity Indices ◽  
Rapid Identification ◽  
Shannon Index ◽  
Medicinal Herbs ◽  
Medicinal Herb ◽  
Chloroplast Microsatellite

AbstractLicorice (Glycyrrhiza glabra) is an important medicinal herb and has long been used in traditional medicine for the treatment of several diseases worldwide. Understanding the genetic diversity within Glycyrrhiza species is important for the efficient conservation of these medicinal herbs. In this study, we have developed 20 polymorphic chloroplast microsatellite (cpSSR) markers using the chloroplast genome of G. lepidota. The cpSSR markers were tested on a total of 27 Glycyrrhiza individual plants. The number of alleles per locus ranged from two to eight among the Glycyrrhiza accessions. Overall, the Shannon index (I) for each cpSSR ranged from 0.315 to 1.694, the diversity indices (h) were 0.140–0.793 and the unbiased diversity indices (uh) were 0.145–0.825. In addition, the cpSSR markers were successfully divided and classified the 27 Glycyrrhiza individuals into four groups. The cpSSR markers developed in this study could be used in the assessment of genetic diversity and rapid identification of Glycyrrhiza species.

scholarly journals Nuclear and chloroplast genome genetic diversity in the wild einkorn wheat, Triticum urartu, revealed by AFLP and SSLP analyses

Hereditas ◽  
2002 ◽  
Vol 137 (3) ◽  
pp. 208-214 ◽  
Author(s):  
KOTA MIZUMOTO ◽  
SHUJIRO HIROSAWA ◽  
CHIHARU NAKAMURA ◽  
SHIGEO TAKUMI
Keyword(s):  
Genetic Diversity ◽  
Chloroplast Genome ◽  
Triticum Urartu ◽  
Einkorn Wheat ◽  
In The Wild

scholarly journals Genetic diversity of the chloroplast genome of Vaccinium oxycoccos L. in Bibai and Nemuro cities, Hokkaido, Japan

2021 ◽  
Vol 47 (1) ◽  
pp. 199-202
Author(s):  
Nanami TANAKA ◽  
Takahiro WAGATSUMA ◽  
Yoshihiro OKAMOTO ◽  
Shiro MORI
Keyword(s):  
Genetic Diversity ◽  
Chloroplast Genome

scholarly journals Heterogeneous Genetic Diversity Estimation of a Promising Domestication Medicinal Motherwort Leonurus Cardiaca Based on Chloroplast Genome Resources

2021 ◽  
Vol 12 ◽  
Author(s):  
Jiahui Sun ◽  
Yiheng Wang ◽  
Thomas Avery Garran ◽  
Ping Qiao ◽  
Mengli Wang ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Chloroplast Genome ◽  
High Throughput Sequencing ◽  
Heart Diseases ◽  
Plant Conservation ◽  
Intraspecific Diversity ◽  
Nucleotide Polymorphisms ◽  
Chloroplast Genomes ◽  
Leonurus Cardiaca ◽  
Rna Genes

Leonurus cardiaca has a long history of use in western herbal medicine and is applied for the treatment of gynaecological conditions, anxiety, and heart diseases. Because of its botanical relationship to the primary Chinese species, L. japonicus, and extensive medical indications that go beyond the traditional indications for the Chinese species, it is a promising medicinal resource. Therefore, the features of genetic diversity and variability in the species have been prioritized. To explore these issues, we sequenced the chloroplast genomes of 22 accessions of L. cardiaca from different geographical locations worldwide using high-throughput sequencing. The results indicate that L. cardiaca has a typical quadripartite structure and range from 1,51,236 bp to 1,51,831 bp in size, forming eight haplotypes. The genomes all contain 114 distinct genes, including 80 protein-coding genes, 30 transfer RNA genes and four ribosomal RNA genes. Comparative analysis showed abundant diversity of single nucleotide polymorphisms (SNPs), indels, simple sequence repeats (SSRs) in 22 accessions. Codon usage showed highly similar results for L. cardiaca species. The phylogenetic and network analysis indicated 22 accessions forming four clades that were partly related to the geographical distribution. In summary, our study highlights the advantage of chloroplast genome with large data sets in intraspecific diversity evaluation and provides a new tool to facilitate medicinal plant conservation and domestication.

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