Stochastic Simulation for Biochemical Reaction Networks in Infectious Disease

Medicinal Chemistry and Drug Design ◽

10.5772/38245 ◽

2012 ◽

Author(s):

Shailza Singh ◽

Sonali Shinde

Keyword(s):

Infectious Disease ◽

Stochastic Simulation ◽

Biochemical Reaction ◽

Reaction Networks ◽

Biochemical Reaction Networks

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An equation-free probabilistic steady-state approximation: Dynamic application to the stochastic simulation of biochemical reaction networks

The Journal of Chemical Physics ◽

10.1063/1.2131050 ◽

2005 ◽

Vol 123 (21) ◽

pp. 214106 ◽

Cited By ~ 52

Author(s):

Howard Salis ◽

Yiannis N. Kaznessis

Keyword(s):

Steady State ◽

Stochastic Simulation ◽

Biochemical Reaction ◽

Reaction Networks ◽

Biochemical Reaction Networks ◽

State Approximation ◽

Steady State Approximation

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A Distributed-Based Stochastic Simulation Algorithm for Large Biochemical Reaction Networks

2007 1st International Conference on Bioinformatics and Biomedical Engineering ◽

10.1109/icbbe.2007.132 ◽

2007 ◽

Cited By ~ 1

Author(s):

Jun-qing Niu ◽

Hao-ran Zheng ◽

Jiu-sheng Chen ◽

Meng Ma ◽

Xu-fa Wang

Keyword(s):

Stochastic Simulation ◽

Stochastic Simulation Algorithm ◽

Biochemical Reaction ◽

Reaction Networks ◽

Simulation Algorithm ◽

Biochemical Reaction Networks

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HRSSA – Efficient hybrid stochastic simulation for spatially homogeneous biochemical reaction networks

Journal of Computational Physics ◽

10.1016/j.jcp.2016.04.056 ◽

2016 ◽

Vol 317 ◽

pp. 301-317 ◽

Cited By ~ 20

Author(s):

Luca Marchetti ◽

Corrado Priami ◽

Vo Hong Thanh

Keyword(s):

Stochastic Simulation ◽

Biochemical Reaction ◽

Reaction Networks ◽

Biochemical Reaction Networks ◽

Spatially Homogeneous

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Deterministic and Stochastic Simulation and Analysis of Biochemical Reaction Networks

Computer Methods, Part C - Methods in Enzymology ◽

10.1016/b978-0-12-381270-4.00012-3 ◽

2011 ◽

pp. 371-395 ◽

Cited By ~ 4

Author(s):

Necmettin Yildirim ◽

Caner Kazanci

Keyword(s):

Stochastic Simulation ◽

Biochemical Reaction ◽

Reaction Networks ◽

Biochemical Reaction Networks

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Scalable FPGA Accelerator of the NRM Algorithm for Efficient Stochastic Simulation of Large-Scale Biochemical Reaction Networks

2015 Euromicro Conference on Digital System Design ◽

10.1109/dsd.2015.53 ◽

2015 ◽

Cited By ~ 1

Author(s):

Evangelos Koutsouradis ◽

George Provelengios ◽

Elias Kouskoumvekakis ◽

Elias S. Manolakos

Keyword(s):

Stochastic Simulation ◽

Large Scale ◽

Biochemical Reaction ◽

Reaction Networks ◽

Biochemical Reaction Networks

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Toward a fast stochastic simulation processor for biochemical reaction networks

2013 IEEE 24th International Conference on Application-Specific Systems, Architectures and Processors ◽

10.1109/asap.2013.6567550 ◽

2013 ◽

Author(s):

Hyungman Park ◽

Andreas Gerstlauer

Keyword(s):

Stochastic Simulation ◽

Biochemical Reaction ◽

Reaction Networks ◽

Biochemical Reaction Networks

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Minimal moment equations for stochastic models of biochemical reaction networks with partially finite state space

The Journal of Chemical Physics ◽

10.1063/1.4937937 ◽

2015 ◽

Vol 143 (24) ◽

pp. 244103 ◽

Cited By ~ 3

Author(s):

Jakob Ruess

Keyword(s):

State Space ◽

Stochastic Models ◽

Biochemical Reaction ◽

Reaction Networks ◽

Moment Equations ◽

Biochemical Reaction Networks ◽

Finite State ◽

Finite State Space

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A Dissipative Approach to the Identification of Biochemical Reaction Networks

IFAC Proceedings Volumes ◽

10.3182/20090706-3-fr-2004.00209 ◽

2009 ◽

Vol 42 (10) ◽

pp. 1259-1264

Author(s):

Dirk Fey ◽

Eric Bullinger

Keyword(s):

Biochemical Reaction ◽

Reaction Networks ◽

Biochemical Reaction Networks

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Model reduction and parameter estimation of non-linear dynamical biochemical reaction networks

IET Systems Biology ◽

10.1049/iet-syb.2015.0034 ◽

2016 ◽

Vol 10 (1) ◽

pp. 10-16 ◽

Cited By ~ 7

Author(s):

Xiaodian Sun ◽

Mario Medvedovic

Keyword(s):

Parameter Estimation ◽

Model Reduction ◽

Biochemical Reaction ◽

Reaction Networks ◽

Biochemical Reaction Networks ◽

Non Linear

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Robust ergodicity and tracking in antithetic integral control of stochastic biochemical reaction networks

2016 IEEE 55th Conference on Decision and Control (CDC) ◽

10.1109/cdc.2016.7798358 ◽

2016 ◽

Cited By ~ 2

Author(s):

Corentin Briat ◽

Mustafa Khammash

Keyword(s):

Biochemical Reaction ◽

Reaction Networks ◽

Biochemical Reaction Networks ◽

Integral Control

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