scholarly journals Positional Cloning in Brassica napus: Strategies for Circumventing Genome Complexity in a Polyploid Plant

10.5772/23220 ◽  
2011 ◽  
Author(s):  
Gregory G. ◽  
Lydiane Gaborieau
Keyword(s):  
Brassica Napus ◽  
Positional Cloning ◽  
Polyploid Plant ◽  
Genome Complexity

Towards Positional Cloning in Brassica napus: Generation and Analysis of Doubled Haploid B. rapa Possessing the B. napus pol CMS and Rfp Nuclear Restorer Gene

2006 ◽  
Vol 61 (1-2) ◽  
pp. 269-281 ◽  
Author(s):  
Nataša Formanová ◽  
Xiu-Qing Li ◽  
Alison M. R. Ferrie ◽  
Mary DePauw ◽  
Wilf A. Keller ◽  
...  
Keyword(s):  
Brassica Napus ◽  
Doubled Haploid ◽  
Positional Cloning ◽  
Restorer Gene ◽  
Nuclear Restorer Gene

scholarly journals Assigning confidence scores to homoeologs using fuzzy logic

PeerJ ◽  
2019 ◽  
Vol 6 ◽  
pp. e6231 ◽  
Author(s):  
Natasha M. Glover ◽  
Adrian Altenhoff ◽  
Christophe Dessimoz
Keyword(s):  
Triticum Aestivum ◽  
Fuzzy Logic ◽  
Brassica Napus ◽  
Gossypium Hirsutum ◽  
Bread Wheat ◽  
Plant Species ◽  
Upland Cotton ◽  
Previous Method ◽  
Improved Method ◽  
Polyploid Plant

In polyploid genomes, homoeologs are a specific subtype of homologs, and can be thought of as orthologs between subgenomes. In Orthologous MAtrix, we infer homoeologs in three polyploid plant species: upland cotton (Gossypium hirsutum), rapeseed (Brassica napus), and bread wheat (Triticum aestivum). While we can typically recognize the features of a “good” homoeolog prediction (a consistent evolutionary distance, high synteny, and a one-to-one relationship), none of them is a hard-fast criterion. We devised a novel fuzzy logic-based method to assign confidence scores to each pair of predicted homoeologs. We inferred homoeolog pairs and used the new and improved method to assign confidence scores, which ranged from 0 to 100. Most confidence scores were between 70 and 100, but the distribution varied between genomes. The new confidence scores show an improvement over our previous method and were manually evaluated using a subset from various confidence ranges.

Hormonal requirement and tissue competency for shoot organogenesis in two cultivars of Brassica napus

1992 ◽  
Vol 84 (4) ◽  
pp. 521-530
Author(s):  
Jacques Julliard ◽  
Lucienne Sossountzov ◽  
Yvette Habricot ◽  
Georges Pelletier
Keyword(s):  
Brassica Napus ◽  
Shoot Organogenesis

The identification of diabetes genes mediating β-cell loss and hyperglycemia using positional cloning

2018 ◽  
Author(s):  
TT Cui ◽  
N Hallahan ◽  
W Jonas ◽  
P Gottmann ◽  
M Jähnert ◽  
...  
Keyword(s):  
Positional Cloning ◽  
Cell Loss ◽  
Β Cell
Sign in / Sign up

Export Citation Format

Share Document