scholarly journals Assessment of Genetic Diversity, Relationships and Structure among Korean Native Cattle Breeds Using Microsatellite Markers

2014 ◽  
Vol 27 (11) ◽  
pp. 1548-1553 ◽  
Author(s):  
Sangwon Suh ◽  
Young-Sin Kim ◽  
Chang-Yeon Cho ◽  
Mi-Jeong Byun ◽  
Seong-Bok Choi ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Microsatellite Markers ◽  
Cattle Breeds ◽  
Native Cattle

scholarly journals Genetic diversity and population structure of four cattle breeds raised in Turkey using microsatellite markers

2019 ◽  
Vol 64 (No. 10) ◽  
pp. 411-419 ◽  
Author(s):  
Eymen Demir ◽  
Murat Soner Balcioğlu
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Microsatellite Markers ◽  
Factorial Correspondence Analysis ◽  
Cattle Breeds ◽  
Expected Heterozygosity ◽  
Bottleneck Analysis ◽  
Holstein Friesian ◽  
Native Cattle ◽  
Marker Level

In the present study, genetic diversity and population structure of Holstein Friesian and three native cattle breeds of Turkey including Turkish Grey Steppe, Eastern Anatolian Red and Anatolian Black were assessed. Totally 120 individuals of 4 breeds were genotyped using 20 microsatellite markers and 204 different alleles, of which 31 were private alleles, were detected. The average observed and expected heterozygosity values were 0.63 and 0.74, respectively. Observed heterozygosity at the marker level ranged from 0.30 (DRBP1) to 0.88 (ILSTS011), while expected heterozygosity ranged from 0.51 (INRABERN172) to 0.88 (SPS113). Inbreeding coefficient values for Turkish Grey Steppe, Eastern Anatolian Red, Anatolian Black and Holstein Friesian were 0.216, 0.202, 0.128 and 0.069, respectively. The lowest pairwise F<sub>ST</sub> value (0.030) was detected between Turkish Grey Steppe and Anatolian Black breeds, while the highest value (0.070) was detected between Turkish Grey Steppe and Holstein Friesian. Results of structure and factorial correspondence analysis revealed that Turkish native cattle breeds and Holstein Friesian were genetically different enough to separate the two breeds. Results of bottleneck analysis indicated heterozygosity deficiency in Turkish Grey Steppe (P &lt; 0.05).

163 Population structure and genetic diversity of Russian native cattle breeds

2017 ◽  
Vol 95 (suppl_4) ◽  
pp. 80-80 ◽  
Author(s):  
A. V. Dotsev ◽  
A. A. Sermyagin ◽  
E. A. Gladyr' ◽  
T. Deniskova ◽  
K. Wimmers ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Cattle Breeds ◽  
Native Cattle

scholarly journals Genetic diversity and population structure of Turkish native cattle breeds

2019 ◽  
Vol 49 (4) ◽  
pp. 628
Author(s):  
Y Öner ◽  
O Yılmaz ◽  
C Eriş ◽  
N Ata ◽  
C Ünal ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Cattle Breeds ◽  
Native Cattle

Genetic diversity and population structure of indigenous yellow cattle breeds of China using 30 microsatellite markers

2007 ◽  
Vol 38 (6) ◽  
pp. 550-559 ◽  
Author(s):  
G. X. Zhang ◽  
Z. G. Wang ◽  
W. S. Chen ◽  
C. X. Wu ◽  
X. Han ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Microsatellite Markers ◽  
Cattle Breeds ◽  
Yellow Cattle

scholarly journals Genetic structure of the Southern meat cattle breed based on microsatellite markers

2019 ◽  
Vol 21 (91) ◽  
pp. 21-28
Author(s):  
A. S. Kramarenko
Keyword(s):  
Genetic Diversity ◽  
Genetic Structure ◽  
Microsatellite Markers ◽  
Bos Taurus ◽  
Bos Indicus ◽  
Cattle Breed ◽  
Animal Husbandry ◽  
State Enterprise ◽  
Tissue Samples ◽  
Cattle Breeds

The Southern Meat cattle is a composite breed developed by crossing Cuban zebu (Bos indicus) with different cattle breeds (Bos taurus) – local the Red Steppe, Hereford, Charolais, Santa Gertrudis, Dairy Shorthorn. Genetic structure of the Southern meat cattle breed from the State Enterprise Experimental Farm “Askaniyske” NAAS Ukraine (Kherson region) were investigated based on the microsatellite DNA loci. Analysis included 192 animals. A panel of 12 bovine-specific microsatellite markers (TGLA227, BM2113, TGLA53, ETH10, SPS115, TGLA122, INRA23, TGLA126, BM1818, ETH3, ETH225 and BM1824), recommended of the ISAG for cattle genetic diversity studies, was selected for genetic characterization and revealing the extent of genetic diversity in the Southern Meat cattle breed. Genomic DNA was extracted from tissue samples using Nexttec column (Nexttec Biotechnology GmbH, Germany) following the manufacturer's instructions. All laboratory tests were conducted in the laboratory of Molecular Genetics, Animal Center of Biotechnology and Molecular Diagnostics, All-Russian Research Institute for Animal Husbandry named after academy member L.K. Ernst. We report the distribution and the frequency of a taurine and an indicine specific alleles in the Southern Meat cattle breed using literature data about the Zebu and different cattle breeds genetic structure based on microsatellite loci from our list. It can be assumed that the TGLA22777, BM2113141-143, ETH10209-211, TGLA122149, INRA23194-198, TGLA126123, ETH225156-158-160 alleles among the Southern Meat cattle breed examined individuals were inherited from a B. indicus ancestor. On the other hand, the TGLA53156, ETH10217-219, TGLA122143, INRA23202, TGLA126115, ETH225148-150, BM1824188-190 alleles in the Southern Meat cattle gene pool may be inherited from a B. taurus ancestor (i.e., taurine breeds diagnostic alleles).

Genetic Characterization of the Bovine Y-chromosomal Microsatellite Markers in the Korean Native Cattle Breeds

2013 ◽  
Vol 24 (2) ◽  
pp. 89-96 ◽  
Author(s):  
Sawgwon Suh ◽  
◽  
Young-Sin Kim ◽  
Chang-Yeon Cho ◽  
Mi-Jeong Byun ◽  
...  
Keyword(s):  
Microsatellite Markers ◽  
Genetic Characterization ◽  
Cattle Breeds ◽  
Native Cattle

scholarly journals Genetic diversity in Zimbabwean Sanga cattle breeds using microsatellite markers

2018 ◽  
Vol 48 (1) ◽  
pp. 128 ◽  
Author(s):  
E Gororo ◽  
S.M. Makuza ◽  
F.P. Chatiza ◽  
F Chidzwondo ◽  
T.W. Sanyika
Keyword(s):  
Genetic Diversity ◽  
Microsatellite Markers ◽  
Cattle Breeds ◽  
Sanga Cattle

scholarly journals Genomic relatedness and diversity of Swedish native cattle breeds

2019 ◽  
Vol 51 (1) ◽  
Author(s):  
Maulik Upadhyay ◽  
Susanne Eriksson ◽  
Sofia Mikko ◽  
Erling Strandberg ◽  
Hans Stålhammar ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Phylogenetic Trees ◽  
Genetic Relatedness ◽  
Demographic History ◽  
Genomic Diversity ◽  
Founder Population ◽  
Southern Sweden ◽  
Cattle Breeds ◽  
Genome Wide ◽  
Native Cattle

Abstract Background Native cattle breeds are important genetic resources given their adaptation to the local environment in which they are bred. However, the widespread use of commercial cattle breeds has resulted in a marked reduction in population size of several native cattle breeds worldwide. Therefore, conservation management of native cattle breeds requires urgent attention to avoid their extinction. To this end, we genotyped nine Swedish native cattle breeds with genome-wide 150 K single nucleotide polymorphisms (SNPs) to investigate the level of genetic diversity and relatedness between these breeds. Results We used various SNP-based approaches on this dataset to connect the demographic history with the genetic diversity and population structure of these Swedish cattle breeds. Our results suggest that the Väne and Ringamåla breeds originating from southern Sweden have experienced population isolation and have a low genetic diversity, whereas the Fjäll breed has a large founder population and a relatively high genetic diversity. Based on the shared ancestry and the constructed phylogenetic trees, we identified two major clusters in Swedish native cattle. In the first cluster, which includes Swedish mountain cattle breeds, there was little differentiation among the Fjäll, Fjällnära, Swedish Polled, and Bohus Polled breeds. The second cluster consists of breeds from southern Sweden: Väne, Ringamåla and Swedish Red. Interestingly, we also identified sub-structuring in the Fjällnära breed, which indicates different breeding practices on the farms that maintain this breed. Conclusions This study represents the first comprehensive genome-wide analysis of the genetic relatedness and diversity in Swedish native cattle breeds. Our results show that different demographic patterns such as genetic isolation and cross-breeding have shaped the genomic diversity of Swedish native cattle breeds and that the Swedish mountain breeds have retained their authentic distinct gene pool without significant contribution from any of the other European cattle breeds that were included in this study.

scholarly journals Microsatellite diversity suggests different histories for Mediterranean and Northern European cattle populations

2005 ◽  
Vol 272 (1574) ◽  
pp. 1837-1843 ◽  
Author(s):  
Teresa Cymbron ◽  
Abigail R Freeman ◽  
M Isabel Malheiro ◽  
Jean-Denis Vigne ◽  
Daniel G Bradley
Keyword(s):  
Genetic Diversity ◽  
Microsatellite Markers ◽  
Near East ◽  
Central European ◽  
Cattle Breeds ◽  
Northern European ◽  
Show Evidence ◽  
The Mediterranean ◽  
European Cattle ◽  
Microsatellite Diversity

Based on archaeological evidence, the spread of agropastoralism across Europe followed two main paths: the Danubian route, along which Neolithic farmers expanded north across the central European plains; and the Mediterranean route, where migration occurred along the coast of the Mediterranean sea. Here we examine 20 cattle breeds from the continent and assess the genetic diversity levels and relationships among the breeds using 19 microsatellite markers. Additionally, we show evidence that concords with two distinct cattle migrations from the Near East, and also demonstrate that Mediterranean cattle breeds may have had more recent input from both the Near East and Africa.

scholarly journals Erratum to: A genome-wide assessment of genetic diversity and population structure of Korean native cattle breeds

BMC Genetics ◽  
2017 ◽  
Vol 18 (1) ◽  
Author(s):  
Aditi Sharma ◽  
Seung-Hwan Lee ◽  
Dajeong Lim ◽  
Han-Ha Chai ◽  
Bong-Hwan Choi ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Cattle Breeds ◽  
Genome Wide ◽  
A Genome ◽  
Native Cattle
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