scholarly journals Adaptive selection at agouti gene inferred breed specific selection signature within the indigenous goat populations

2017 ◽  
Author(s):  
Hafiz Ishfaq Ahmad ◽  
Guiqiong Liu ◽  
Xunping Jiang ◽  
Chenhui Liu ◽  
Xu Fangzheng ◽  
...  
Keyword(s):  
Selection Signature ◽  
Adaptive Selection ◽  
Indigenous Goat ◽  
Agouti Gene

Adaptive Selection of Sampling Interval in Frequency Domain for Estimating the Poles of Scatterers

PIERS Online ◽  
2007 ◽  
Vol 3 (1) ◽  
pp. 106-110
Author(s):  
Shaogang Wang ◽  
Xinpu Guan ◽  
Dangwei Wang ◽  
Xingyi Ma ◽  
Yi Su
Keyword(s):  
Frequency Domain ◽  
Sampling Interval ◽  
Adaptive Selection ◽  
Selection Of

SSAS: Spatiotemporal Scale Adaptive Selection for Improving Bias Correction on Precipitation

2021 ◽  
pp. 1-14
Author(s):  
Yiqun Liu ◽  
Junping Zhang ◽  
Lei Chen ◽  
Hai Chu ◽  
James Z. Wang ◽  
...  
Keyword(s):  
Bias Correction ◽  
Adaptive Selection ◽  
Spatiotemporal Scale ◽  
Selection For

scholarly journals A Digital Framework to Predict the Sunshine Requirements of Landscape Plants

2021 ◽  
Vol 11 (5) ◽  
pp. 2098
Author(s):  
Heyi Wei ◽  
Wenhua Jiang ◽  
Xuejun Liu ◽  
Bo Huang
Keyword(s):  
Solar Radiation ◽  
Plant Species ◽  
Large Scale ◽  
Normal Growth ◽  
Adaptive Selection ◽  
Landscape Plant ◽  
Landscape Plants ◽  
The Stability ◽  
Stability And Accuracy ◽  
The City

Knowledge of the sunshine requirements of landscape plants is important information for the adaptive selection and configuration of plants for urban greening, and is also a basic attribute of plant databases. In the existing studies, the light compensation point (LCP) and light saturation point (LSP) have been commonly used to indicate the shade tolerance for a specific plant; however, these values are difficult to adopt in practice because the landscape architect does not always know what range of solar radiation is the best for maintaining plant health, i.e., normal growth and reproduction. In this paper, to bridge the gap, we present a novel digital framework to predict the sunshine requirements of landscape plants. First, the research introduces the proposed framework, which is composed of a black-box model, solar radiation simulation, and a health standard system for plants. Then, the data fitting between solar radiation and plant growth response is used to obtain the value of solar radiation at different health levels. Finally, we adopt the LI-6400XT Portable Photosynthetic System (Li-Cor Inc., Lincoln, NE, USA) to verify the stability and accuracy of the digital framework through 15 landscape plant species of a residential area in the city of Wuhan, China, and also compared and analyzed the results of other researchers on the same plant species. The results show that the digital framework can robustly obtain the values of the healthy, sub-healthy, and unhealthy levels for the 15 landscape plant species. The purpose of this study is to provide an efficient forecasting tool for large-scale surveys of plant sunshine requirements. The proposed framework will be beneficial for the adaptive selection and configuration of urban plants and will facilitate the construction of landscape plant databases in future studies.

scholarly journals Identifying Candidate Genes for Hypoxia Adaptation of Tibet Chicken Embryos by Selection Signature Analyses and RNA Sequencing

Genes ◽  
2020 ◽  
Vol 11 (7) ◽  
pp. 823
Author(s):  
Xiayi Liu ◽  
Xiaochen Wang ◽  
Jing Liu ◽  
Xiangyu Wang ◽  
Haigang Bao
Keyword(s):  
Candidate Genes ◽  
Rna Sequencing ◽  
Differentially Expressed Genes ◽  
Gallus Gallus ◽  
Differentially Expressed ◽  
Tibet Plateau ◽  
Embryonic Liver ◽  
Selection Signature ◽  
Chicken Embryos ◽  
Hypoxia Adaptation

The Tibet chicken (Gallus gallus) lives on the Qinghai–Tibet Plateau and adapts to the hypoxic environment very well. The objectives of this study was to obtain candidate genes associated with hypoxia adaptation in the Tibet chicken embryos. In the present study, we used the fixation index (Fst) and cross population extended haplotype homozygosity (XPEHH) statistical methods to detect signatures of positive selection of the Tibet chicken, and analyzed the RNA sequencing data from the embryonic liver and heart with HISAT, StringTie and Ballgown for differentially expressed genes between the Tibet chicken and White leghorn (Gallus gallus, a kind of lowland chicken) embryos hatched under hypoxia condition. Genes which were screened out by both selection signature analysis and RNA sequencing analysis could be regarded as candidate genes for hypoxia adaptation of chicken embryos. We screened out 1772 genes by XPEHH and 601 genes by Fst, and obtained 384 and 353 differentially expressed genes in embryonic liver and heart, respectively. Among these genes, 89 genes were considered as candidate genes for hypoxia adaptation in chicken embryos. ARNT, AHR, GSTK1 and FGFR1 could be considered the most important candidate genes. Our findings provide references to elucidate the molecular mechanism of hypoxia adaptation in Tibet chicken embryos.

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