scholarly journals Genetic variability in pitch pine (Pinus rigida Mill.) growing in the Niepołomice Forest as determined by ISSR markers

2018 ◽  
Vol 87 (3) ◽  
Author(s):  
Katarzyna Masternak ◽  
Jacek Banach ◽  
Katarzyna Głębocka ◽  
Marek Wajdzik
Keyword(s):  
Genetic Variability ◽  
Issr Markers ◽  
Principal Coordinate Analysis ◽  
Effective Number ◽  
Pinus Rigida ◽  
Expected Heterozygosity ◽  
Pitch Pine ◽  
Pine Trees ◽  
Late Nineteenth ◽  
Different Origin

The study aimed to determine the genetic variability in pitch pine (<em>Pinus rigida</em> Mill.) growing in the Niepołomice Forest (southern Poland). In the late nineteenth and early twentieth century, Adolf Cieślar of the Department of Forestry Research in Mariabrunn near Vienna, Austria established the experimental crops of pitch pine. During the study, 227 trees that grew in seven subunits were considered; an analysis of genetic polymorphism using the intersimple sequence repeats (ISSR) technique revealed that pitch pine is genetically variable. The average number of alleles at a given locus for all the pine trees was 1.649, while the effective number of alleles at the loci was 1.435. The value of expected heterozygosity was 0.254, while the percentage of polymorphic loci was 75.30%. The average genetic distance between the examined pines was 0.082. Principal coordinate analysis (PCoA) divided the examined pines into three groups, which was also confirmed by the structure-analysis results of the software STRUCTURE. The resulting division was mainly generated by the SR70 primer, which was indicated to be the primer that differentiated the examined populations of pitch pine. Affiliation of particular trees to selected groups was based on their occurrence in individual crops. This suggests a different origin of the seeds used to establish the research plots of pitch pine in the Niepołomice Forest.

Genetic variability at allozyme markers in sycamore (Acer pseudoplatanus) populations from northwestern Italy

2007 ◽  
Vol 37 (2) ◽  
pp. 395-403 ◽  
Author(s):  
P. Belletti ◽  
I. Monteleone ◽  
D. Ferrazzini
Keyword(s):  
Genetic Variability ◽  
Single Gene ◽  
Acer Pseudoplatanus ◽  
Effective Number ◽  
Expected Heterozygosity ◽  
Slight Excess ◽  
Forest Reproductive Material ◽  
Native Populations ◽  
Reproductive Material ◽  
The Mean

Genetic diversity and differentiation of 12 native populations of sycamore ( Acer pseudoplatanus L.) from northwestern Italy were investigated by means of variation detected in 10 polymorphic isozyme systems encoded by 16 loci. The trees showed relatively large genetic variability (mean number of alleles per locus = 2.78, effective number of alleles per locus = 1.47, percentage of polymorphic loci = 96.9, expected heterozygosity = 0.280) but small interpopulational variation (FST = 0.019), suggesting the presence of a single gene pool. A slight excess of heterozygotes was found, and the overall inbreeding coefficient (FIS) was –0.038. There was a positive correlation between the age of the individuals sampled and heterozygosity, suggesting the occurrence of natural selection against homozygotes. No significant correlation was detected between genetic and geographic distances of populations, confirming the lack of any barriers to gene flow. Estimate of the mean effective number of migrants exchanged between populations was 4.399, based on the private alleles method. The contribution of the results in relation to terms of the most appropriate strategies to preserve genetic variability of sycamore and to collect forest reproductive material is discussed.

scholarly journals GENETIC POLYMORPHISM AND SEED DIFFERENTIATION SCOTS PINE SEEDS OF DIFFERENT SELECTION CATEGORIES USING ISSR-MARKERS

2020 ◽  
Vol 9 (4) ◽  
pp. 15-24
Author(s):  
Olga Sheikina ◽  
Tat'yana Krivorotova ◽  
Yuriy Gladkov
Keyword(s):  
Genetic Diversity ◽  
Genetic Variation ◽  
Polymerase Chain Reaction Method ◽  
Issr Markers ◽  
Effective Number ◽  
Polymorphic Loci ◽  
Expected Heterozygosity ◽  
Polymerase Chain ◽  
The Republic ◽  
Issr Primers

The purpose of the study is a comparative assessment of the genetic diversity and differentiation of common pine seeds of different breeding categories. The object of the study was seeds harvested on permanent forest seed plots and clone forest seed plantations in the Penza region, the Chuvash Republic and the Republic of Mari El. A polymerase chain reaction method with ISSR primers has been used to assess the level of genetic diversity and differentiation. A total of 250 loci have been amplified using 6 ISSR primers, 210 of which were polymorphic ones. The studied seed batches were characterized by different levels of genetic variation. Indicators of genetic diversity of seeds (improved breeding category) have varied within the following limits: the percentage of polymorphic loci from 56.3 to 72.6; the number of alleles per locus from 1.56 to 1.73; effective number of alleles from 1.26 to 1.38; expected heterozygosity from 0.17 to 0.23. Seeds of the normal selection category are characterized by the following indicators of genetic diversity: the percentage of polymorphic loci is 57.2–72.6; the number of alleles per locus 1.57–1.68; the effective number of alleles is 1.25–1.33; expected heterozygosity - 0.16–0.19. Dependence of the level of genetic diversity on the selection category of seeds has not been identified. Generalized indicators of the genetic diversity of improved seeds have been close or higher in comparison with normal seeds. Ney's genetic distance between 8 batches of seeds has ranged from 0.027 to 0.113. The genetic subdivision index (GSI) was 0.25. Therefore, a large proportion of the genetic variation is located inside seed batches (75%).

scholarly journals Genetic variability of Scots pine (Pinus sylvestris L.) in maternal regions of provenance

2015 ◽  
Vol 57 (2) ◽  
pp. 112-119 ◽  
Author(s):  
Paweł Przybylski ◽  
Jan Matras ◽  
Małgorzata Sułkowska
Keyword(s):  
Genetic Variability ◽  
Pinus Sylvestris ◽  
Scots Pine ◽  
Genetic Parameters ◽  
Fixation Index ◽  
Effective Number ◽  
Expected Number ◽  
Expected Heterozygosity ◽  
Rare Alleles ◽  
Fixation Indices

Abstract The analysis of chosen selected Scots Pine (Pinus sylvestris L.), populations representing different seed regions: 107 (Międzyzdroje), 305 (Woziwoda), 206 (Strzałowo), 208 (Białowieża), 504 (Bolesławiec), 606 (Józefów) were performed using 10 isoensyme markers: Gdh (E.C.1.4.1.2), Sdh-A, Sdh-B (E.C.1.1.1.25), Pgd-B (E.C.1.1.1.44), Mdh-A, Mdh-C (E.C.1.1.1.37), Got-A, Got-B, Got-C (E.C.2.6.1.1), Dia-C (E.C.1.8.1.4). There were calculated following genetic parameters: allelic frequencies, observed and expected heterozygosities, and Wright’s fixation indexes. In populations, the results of analysis indicated presence of rare alleles. In all study populations, the average effective number of alleles per locus was 1.46 and was lower than expected number of alleles per locus of 1.93. The results for the effective number of alleles of the population per locus were as follows: Strzałowo and Białowieża 1.54, Bolesławiec 1.48, Jozefów 1.44, Świnoujście 1.42, Woziwoda 1.35. Average observed heterozygosity in the studied populations was calculated at the level of 0.26 and it was lower than the expected heterozygosity at 0.28. For populations, the level of heterozygosities were as follow: Strzałowo 0.35, Bolesławiec and Białowieża 0.25, Józefów 0.27, Świnoujście 0.23, Woziwoda 0.26. In particular loci level of heterozygosity was different, as the most heterozygous Mdh-C locus was estimated, while minimum Got-C. Significant differences in allele frequency of Hardy-Weinberg deviation equilibrium were found in 10 cases: Strzałowo (Got-C), Bolesławiec (Got-B), Białowieża (Got-B, Gdh), Józefów (Mdh-C), Międzyzdroje (Got-B, Got-C, Mdh-C), Woziwoda (Got-C, Gdh). All studied populations had a lower effective number of alleles per locus (Ne) comparing to the observed number of alleles (Na). Wright’s fixation indices were negative for populations: Strzałowo (-0.09), Józefów (-0.03), Międzyzdroje (-0.01) and positive for: Białowieża (0.12), Woziwoda and Bolesławiec (0.07). The extremely high Wright’s fixation index (0.12) was observed for Białowieża population.

Assessment of genetic variability amongst cultivated populations of Khasi mandarin (Citrus reticulata Blanco) detected by ISSR

2021 ◽  
pp. 1-11
Author(s):  
Karishma Kashyap ◽  
Rasika M. Bhagwat ◽  
Sofia Banu
Keyword(s):  
Genetic Diversity ◽  
Genetic Variability ◽  
Inter Simple Sequence Repeat ◽  
Northeast India ◽  
Issr Markers ◽  
Citrus Reticulata ◽  
Brahmaputra Valley ◽  
Indian Food ◽  
Cultivated Populations ◽  
High Level

Abstract Khasi mandarin (Citrus reticulata Blanco) is a commercial mandarin variety grown in northeast India and one of the 175 Indian food items included in the global first food atlas. The cultivated plantations of Khasi mandarin grown prominently in the lower Brahmaputra valley of Assam, northeast India, have been genetically eroded. The lack in the efforts for conservation of genetic variability in this mandarin variety prompted diversity analysis of Khasi mandarin germplasm across the region. Thus, the study aimed to investigate genetic diversity and partitioning of the genetic variations within and among 92 populations of Khasi mandarin collected from 10 cultivated sites in Kamrup and Kamrup (M) districts of Assam, India, using Inter-Simple Sequence Repeat (ISSR) markers. The amplification of genomic DNA with 17 ISSR primers yielded 216 scorable DNA amplicons of which 177 (81.94%) were polymorphic. The average polymorphism information content was 0.39 per primer. The total genetic diversity (HT = 0.28 ± 0.03) was close to the diversity within the population (HS = 0.20 ± 0.01). A high mean coefficient of gene differentiation (GST = 0.29) reflected a high level of gene flow (Nm = 1.22), indicating high genetic differentiation among the populations. Analysis of Molecular Variance (AMOVA) showed 78% of intra-population differentiation, 21% among the population and 1% among the districts. The obtained results indicate the existence of a high level of genetic diversity in the cultivated Khasi mandarin populations, indicating the need for preservation of each existing population to revive the dying out orchards in northeast India.

scholarly journals Elucidating Genetic Diversity in Apricot (Prunus armeniaca L.) Cultivated in the North-Western Himalayan Provinces of India Using SSR Markers

Plants ◽  
2021 ◽  
Vol 10 (12) ◽  
pp. 2668
Author(s):  
Zahid Nabi Sheikh ◽  
Vikas Sharma ◽  
Rafiq Ahmad Shah ◽  
Shilpa Raina ◽  
Maha Aljabri ◽  
...  
Keyword(s):  
Genetic Variability ◽  
Ssr Markers ◽  
Polymorphic Information Content ◽  
Genetic Parameter ◽  
Nutritional Composition ◽  
Prunus Armeniaca ◽  
Jammu And Kashmir ◽  
Expected Heterozygosity ◽  
Wild Apricot ◽  
Prunus Armeniaca L

Apricot (Prunus armeniaca L.) is an important temperate fruit crop worldwide. The availability of wild apricot germplasm and its characterization through genomic studies can guide us towards its conservation, increasing productivity and nutritional composition. Therefore, in this study, we carried out the genomic characterization of 50 phenotypically variable accessions by using SSR markers in the erstwhile States of Jammu and Kashmir to reveal genetic variability among accessions and their genetic associations. The genetic parameter results revealed that the number of alleles per locus (Na) ranged from 1 to 6 with a mean Na value of 3.89 and the mean effective number of alleles (Ne) per locus 1.882 with a range of 1.22 to 2. Similarly, the polymorphic information content (PIC) values ranged from 0.464 to 0.104. The observed heterozygosity (Ho) (0.547) was found to have higher than expected heterozygosity (He) (0.453) with average heterozygosity of 0.4483. The dendrogram clustered genotypes into three main clades based on their pedigree. The population structure revealed IV sub-populations with all admixtures except the III sub-population, which was mainly formed of exotic cultivars. The average expected heterozygosity (He) and population differentiation within four sub-populations was 1.78 and 0.04, respectively, and explained 95.0% of the total genetic variance in the population. The results revealed that the SSR marker studies could easily decrypt the genetic variability present within the germplasm, which may form the base for the establishment of good gene banks by reducing redundancy of germplasm, selection of parents for any breeding program.

scholarly journals Application of Microsatellite and Inter Simple Sequence Markers for Certifying Trueness to Type of Grafted Ramets and Clustering of Persian Walnut Varieties

2021 ◽  
Author(s):  
Masoomeh Hosseini Nickravesh ◽  
Kourosh Vahdati ◽  
fatemeh amini ◽  
Reza Amiri ◽  
Keith Woeste
Keyword(s):  
Ssr Markers ◽  
Issr Markers ◽  
Principal Coordinate Analysis ◽  
Dna Fingerprint ◽  
Polymorphic Ssrs ◽  
Persian Walnut ◽  
Inter Simple Sequence Repeats ◽  
Ssr Loci ◽  
Ssrs Markers ◽  
Simple Sequence

Abstract The utility of seventeen Microsatellite (SSR) markers and fifteen inter simple sequence repeats (ISSR) markers for the identification of twenty eight ramets of 11 varieties of walnut (Juglans regia) was explored. Thirty nine individual genomes were screened using 61 and 38 scorable fragments from SSR and ISSR markers, respectively. The least polymorphic SSR locus was WGA004 (two alleles) and the most polymorphic (5 alleles) was WGA276. Polymorphism information content values ranged from 0.08 (WGA004) to 0.43 (WGA032) in SSR markers and from 0.11 (AGA (AC)7) to 0.49 (CAC(TGT)5) in ISSR markers, with an average of 0.29 and 0.19, respectively. In most cases, grafted varieties with identical names also had the same microsatellites profile. The principal coordinate analysis and clustering (UPGMA) based on the combined marker set emphasized two failures in grafting or off-types, ramets identified as Serr 4 (S4) and Vina 1 (V1). The presence of two off-type ramets in the walnut research orchard emphasizes the importance of using molecular certification for proving true-to-type of walnut orchards. Using 13 polymorphic SSRs, we tabulated a DNA fingerprint chart of 11 walnut varieties. Except for ‘Chandler’, each cultivar could be distinguished using a combination of only two SSR loci. The 13 SSRs markers evaluated in this study could be used in future to identify clones produced from the varieties.

scholarly journals Diurnal Pine Bark Structure Dynamics Affect Properties Relevant to Firebrand Generation

2020 ◽  
Author(s):  
Scott Pokswinski ◽  
Michael R. Gallagher ◽  
Nicholas S. Skowronski ◽  
E. Louise Loudermilk ◽  
Joseph J. O'Brien ◽  
...  
Keyword(s):  
Moisture Content ◽  
Longleaf Pine ◽  
Pinus Palustris ◽  
Time Of Day ◽  
Diurnal Changes ◽  
Solar Exposure ◽  
Structure Changes ◽  
Pitch Pine ◽  
Pine Trees ◽  
Bark Structure

Firebrands are an important agent of wildfire spread and structure fire ignitions at the wildland urban interface. Bark flake morphology has been highlighted as an important, yet poorly characterized factor in firebrand generation, transport, deposition, and ignition of unburned material. Using pine species where bark flakes are the documented source of embers, we conducted experiments to investigate how bark structure changes in response to diurnal drying. Over a 3-day period in a longleaf pine (Pinus palustris Mill.) stand in Florida, we recorded changes in temperature, moisture content and structure of bark across different facing aspects of mature pine trees to examine the effects of varying solar exposure on bark moisture. We further compared results to bark drying in a pitch pine (Pinus rigida Mill.) plantation in New Jersey. Under all conditions, bark peeled and lifted away from the tree trunk over the study periods. Tree bole aspect and the time of day interacted to significantly affect bark peeling. General temperature increases and moisture content decreases were significantly different between east and west aspects in pitch pine, and with time of day and aspect in longleaf pine. These results illustrate that bark moisture and flakiness is highly dynamic on short time scales, driven largely by solar exposure. These diurnal changes likely influence the probability of firebrand production during fire events via controls on moisture (ignition) and peeling (lofting).

scholarly journals AN ARBOREAL ORCHELIMUM

1904 ◽  
Vol 36 (5) ◽  
pp. 132-132
Author(s):  
Wm. T. Davis
Keyword(s):  
New Jersey ◽  
Late Summer ◽  
Pine Barrens ◽  
Pitch Pine ◽  
Pine Trees

Those who visit the pine-barrens of New Jersey know what a pleasure it is to ramble along the narrow wooded-ppaths among the pine trees ; old paths that after once being made continue for many years, and may seldom entertain a pedestrian. Along these paths and by the side of the sandy roads, any time during late summer arrd until frost, one may hear a faint, lisping little song from a grasshopper corning from the pines, often from their topmost branches. It is an easy matter to climb the pitch-pine, which is usually arranged admirably for the purpose, and the grasshopper is also friendly to investigation, and commonly continues to stridulate.

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