scholarly journals Subsurface automated samplers (SAS) for ocean acidification research

2020 ◽  
Vol 96 (4) ◽  
pp. 735-752
Author(s):  
Ian C Enochs ◽  
Nathan Formel ◽  
Lauren Shea ◽  
Leah Chomiak ◽  
Alan Piggot ◽  
...  
Keyword(s):  
Ocean Acidification ◽  
Dissolved Inorganic Carbon ◽  
Low Cost ◽  
Total Alkalinity ◽  
Carbonate Chemistry ◽  
Field Programmable ◽  
And Performance ◽  
And Function ◽  
The Cost ◽  
Electronic Hardware

Ocean acidification (OA) is the process whereby anthropogenic carbon dioxide is absorbed into seawater, resulting in altered carbonate chemistry and a decline in pH. OA will negatively impact numerous marine organisms, altering the structure and function of entire ecosystems. The progression of OA, while faster than has occurred in recent geological history, has been subtle and detection may be complicated by high variability in shallow-water environments. Nevertheless, comprehensive monitoring and characterization is important given the scale and severity of the problem. Presently, technologies used to measure OA in the field are costly and limited by their detection of only one carbonate chemistry parameter, such as pH. Discrete water samples, by contrast, offer a means of measuring multiple components of the carbonate system, including parameters of particular explanatory value (e.g., total alkalinity, dissolved inorganic carbon), for which field-based sensors do not presently exist. Here we describe the design, use, and performance of a low- cost (<$220 USD) subsurface automated sampler (SAS), suitable for the collection of water for carbonate chemistry analysis. Each sampler is field-programmable using a remote control, performs in depths up to 55 m seawater, collects two separately preserved samples, and logs temperature at the time of collection. SAS are designed from the ground up to be open source with respect to physical design and sampling components, electronic hardware, and software. Build instructions, parts lists, and printable 3D files are provided along with code to ultimately lower the cost of OA monitoring, facilitate further research, and encourage application-specific customization.

scholarly journals CO<sub>2</sub> perturbation experiments: similarities and differences between dissolved inorganic carbon and total alkalinity manipulations

2009 ◽  
Vol 6 (10) ◽  
pp. 2145-2153 ◽  
Author(s):  
K. G. Schulz ◽  
J. Barcelos e Ramos ◽  
R. E. Zeebe ◽  
U. Riebesell
Keyword(s):  
Ocean Acidification ◽  
Inorganic Carbon ◽  
Dissolved Inorganic Carbon ◽  
Total Alkalinity ◽  
Calcium Carbonate Precipitation ◽  
Carbonate Chemistry ◽  
Carbonate System ◽  
Experimental Conditions ◽  
Saturation State ◽  
Basic Approaches

Abstract. Increasing atmospheric carbon dioxide (CO2) through human activities and invasion of anthropogenic CO2 into the surface ocean alters the seawater carbonate chemistry, increasing CO2 and bicarbonate (HCO3−) at the expense of carbonate ion (CO32−) concentrations. This redistribution in the dissolved inorganic carbon (DIC) pool decreases pH and carbonate saturation state (Ω). Several components of the carbonate system are considered potential key variables influencing for instance calcium carbonate precipitation in marine calcifiers such as coccolithophores, foraminifera, corals, mollusks and echinoderms. Unravelling the sensitivities of marine organisms and ecosystems to CO2 induced ocean acidification (OA) requires well-controlled experimental setups and accurate carbonate system manipulations. Here we describe and analyse the chemical changes involved in the two basic approaches for carbonate chemistry manipulation, i.e. changing DIC at constant total alkalinity (TA) and changing TA at constant DIC. Furthermore, we briefly introduce several methods to experimentally manipulate DIC and TA. Finally, we examine responses obtained with both approaches using published results for the coccolithophore Emiliania huxleyi. We conclude that under most experimental conditions in the context of ocean acidification DIC and TA manipulations yield similar changes in all parameters of the carbonate system, which implies direct comparability of data obtained with the two basic approaches for CO2 perturbation.

scholarly journals Concomitant ocean acidification and increasing total alkalinity at a coastal site in the NW Mediterranean Sea (2007-2015)

2016 ◽  
Author(s):  
Lydia Kapsenberg ◽  
Samir Alliouane ◽  
Frédéric Gazeau ◽  
Laure Mousseau ◽  
Jean-Pierre Gattuso
Keyword(s):  
Ocean Acidification ◽  
Mediterranean Sea ◽  
Dissolved Inorganic Carbon ◽  
Coastal Ocean ◽  
Total Alkalinity ◽  
Global Ocean ◽  
Coastal Zones ◽  
Carbonate Chemistry ◽  
Nw Mediterranean ◽  
Nw Mediterranean Sea

Abstract. Monitoring of global ocean change is necessary in coastal zones due to their physical and biological complexity. Here, we document changes in coastal carbonate chemistry at the coastal time-series station, Point B, in the NW Mediterranean Sea from 2007 through 2015 at 1 and 50 m. The rate of surface ocean acidification (−0.0028 ± 0.0003 units pHT yr−1) was faster-than-expected based on atmospheric carbon dioxide forcing alone. Changes in carbonate chemistry were predominantly driven by an increase in total dissolved inorganic carbon (CT, +2.97 ± 0.20 μmol kg−1 yr−1), > 50 % of which was buffered by a synchronous increase in total alkalinity (AT, +2.08 ± 0.19 μmol kg−1 yr−1). The increase in AT was unrelated to salinity and its cause remains to be identified. Interestingly, concurrent increases in AT and CT were most rapid from May to July. Changes at 50 m were slower compared to 1 m. It seems therefore likely that changes in coastal AT cycling via a shallow coastal process gave rise to these observations. This study exemplifies the importance of understanding coastal ocean acidification through localized biogeochemical cycling that extends beyond simple air-sea gas exchange dynamics, in order to make relevant predictions about future coastal ocean change and ecosystem function.

scholarly journals Ocean acidification from 1997 to 2011 in the subarctic western North Pacific Ocean

2013 ◽  
Vol 10 (5) ◽  
pp. 8283-8311 ◽  
Author(s):  
M. Wakita ◽  
S. Watanabe ◽  
M. Honda ◽  
A. Nagano ◽  
K. Kimoto ◽  
...  
Keyword(s):  
Ocean Acidification ◽  
Mixed Layer ◽  
North Pacific ◽  
Dissolved Inorganic Carbon ◽  
North Pacific Ocean ◽  
Total Alkalinity ◽  
Co2 Uptake ◽  
The North ◽  
Western Subarctic Gyre ◽  
Calcite Saturation

Abstract. Rising atmospheric CO2 contents have led to greater CO2 uptake by the oceans, lowering both pH due to increasing hydrogen ions and CaCO3 saturation states due to declining carbonate ion (CO32−). Here, we used previously compiled data sets and new data collected in 2010 and 2011 to investigate ocean acidification of the North Pacific western subarctic gyre. In winter, the western subarctic gyre is a source of CO2 to the atmosphere because of convective mixing of deep waters rich in dissolved inorganic carbon (DIC). We calculated pH in winter mixed layer from DIC and total alkalinity (TA), and found that it decreased at the rate of −0.001 ± 0.0004 yr−1 from 1997 to 2011. This decrease rate is slower than that expected under condition of seawater/atmosphere equilibration, and it is also slower than the rate in the subtropical regions (−0.002 yr−1). The slow rate is caused by a reduction of CO2 emission in winter due to an increase in TA. Below the mixed layer, the calcite saturation horizon (~185 m depth) shoaled at the rate of 2.9 ± 0.9 m yr−1 as the result of the declining CO32− concentration (−0.03 ± 0.01 μmol k−1yr−1). Between 200 m and 300 m depth, pH decline during the study period (−0.0051 ± 0.0010 yr−1) was larger than ever reported in the open North Pacific. This enhanced acidification rate below the calcite saturation horizon reflected not only the uptake of anthropogenic CO2 but also the increase in the decomposition of organic matter evaluated from the increase in AOU, which suggests that the dissolution of CaCO3 particles increased.

scholarly journals Reviews and Syntheses: Responses of coccolithophores to ocean acidification: a meta-analysis

2015 ◽  
Vol 12 (6) ◽  
pp. 1671-1682 ◽  
Author(s):  
J. Meyer ◽  
U. Riebesell
Keyword(s):  
Ocean Acidification ◽  
Dissolved Inorganic Carbon ◽  
Meta Analysis ◽  
Physiological Responses ◽  
Total Alkalinity ◽  
Adaptive Responses ◽  
Negative Effects ◽  
Ecological Fitness ◽  
Negative Effect ◽  
Gephyrocapsa Oceanica

Abstract. Concerning their sensitivity to ocean acidification, coccolithophores, a group of calcifying single-celled phytoplankton, are one of the best-studied groups of marine organisms. However, in spite of the large number of studies investigating coccolithophore physiological responses to ocean acidification, uncertainties still remain due to variable and partly contradictory results. In the present study we have used all existing data in a meta-analysis to estimate the effect size of future pCO2 changes on the rates of calcification and photosynthesis and the ratio of particulate inorganic to organic carbon (PIC / POC) in different coccolithophore species. Our results indicate that ocean acidification has a negative effect on calcification and the cellular PIC / POC ratio in the two most abundant coccolithophore species: Emiliania huxleyi and Gephyrocapsa oceanica. In contrast, the more heavily calcified species Coccolithus braarudii did not show a distinct response when exposed to elevated pCO2/reduced pH. Photosynthesis in Gephyrocapsa oceanica was positively affected by high CO2, while no effect was observed for the other coccolithophore species. There was no indication that the method of carbonate chemistry manipulation was responsible for the inconsistent results regarding observed responses in calcification and the PIC / POC ratio. The perturbation method, however, appears to affect photosynthesis, as responses varied significantly between total alkalinity (TA) and dissolved inorganic carbon (DIC) manipulations. These results emphasize that coccolithophore species respond differently to ocean acidification, both in terms of calcification and photosynthesis. Where negative effects occur, they become evident at CO2 levels in the range projected for this century in the case of unabated CO2 emissions. As the data sets used in this meta-analysis do not account for adaptive responses, ecological fitness and ecosystem interactions, the question remains as to how these physiological responses play out in the natural environment.

NZOA-ON: the New Zealand Ocean Acidification Observing Network

2020 ◽  
Vol 71 (3) ◽  
pp. 281 ◽  
Author(s):  
J. M. Vance ◽  
K. I. Currie ◽  
C. S. Law ◽  
J. Murdoch ◽  
J. Zeldis
Keyword(s):  
New Zealand ◽  
Ocean Acidification ◽  
Inorganic Carbon ◽  
Dissolved Inorganic Carbon ◽  
Total Alkalinity ◽  
Grass Roots ◽  
The Past ◽  
Field Samples ◽  
The University ◽  
Global Initiatives

A national observing network has been operating over the past 4 years to inform the scientific and economic challenges of ocean acidification (OA) facing New Zealand. The New Zealand Ocean Acidification Observing Network (NZOA-ON) consists of 12 sites across varied coastal ecosystems. These ecosystems range from oligotrophic ocean-dominated systems to eutrophic river-dominated systems, with sites that are pristine or affected by agriculture and urbanisation. Fortnightly measurements of total alkalinity and dissolved inorganic carbon provide the baseline of carbonate chemistry in these varied ecosystems and will facilitate detection of future changes, as well as providing a present-day baseline. The National Institute of Water and Atmospheric Research and the University of Otago have developed a ‘grass-roots’ sampling program, providing training and equipment that enable sampling partners to collect field samples for analyses at a central laboratory. NZOA-ON leverages existing infrastructure and partnerships to maximise data captured for understanding the drivers of chemical changes associated with OA and ecological responses. NZOA-ON coordinates with and contributes to global initiatives to understand and mitigate the broader impacts of OA. A description of NZOA-ON is presented with preliminary analyses and comparison of data from different sites after the first 4 years of the network.

scholarly journals Technical Note: Maximising accuracy and minimising cost of a potentiometrically regulated ocean acidification simulation system

2015 ◽  
Vol 12 (3) ◽  
pp. 713-721 ◽  
Author(s):  
C. D. MacLeod ◽  
H. L. Doyle ◽  
K. I. Currie
Keyword(s):  
Ocean Acidification ◽  
Dissolved Inorganic Carbon ◽  
Ph Regulation ◽  
Shell Growth ◽  
Experimental Studies ◽  
Technical Note ◽  
Simulation System ◽  
Total Alkalinity ◽  
Liquid Junction ◽  
Treatment Unit

Abstract. This article describes a potentiometric ocean acidification simulation system which automatically regulates pH through the injection of 100% CO2 gas into temperature-controlled seawater. The system is ideally suited to long-term experimental studies of the effect of acidification on biological processes involving small-bodied (10–20 mm) calcifying or non-calcifying organisms. Using hobbyist-grade equipment, the system was constructed for approximately USD 1200 per treatment unit (tank, pH regulation apparatus, chiller, pump/filter unit). An overall tolerance of ±0.05 pHT units (SD) was achieved over 90 days in two acidified treatments (7.60 and 7.40) at 12 °C using glass electrodes calibrated with synthetic seawater buffers, thereby preventing liquid junction error. The performance of the system was validated through the independent calculation of pHT (12 °C) using dissolved inorganic carbon and total alkalinity data taken from discrete acidified seawater samples. The system was used to compare the shell growth of the marine gastropod Zeacumantus subcarinatus infected with the trematode parasite Maritrema novaezealandensis with that of uninfected snails at pH levels of 7.4, 7.6, and 8.1.

scholarly journals Development of a Biogeochemical and Carbon Model Related to Ocean Acidification Indices with an Operational Ocean Model Product in the North Western Pacific

2019 ◽  
Vol 11 (9) ◽  
pp. 2677 ◽  
Author(s):  
Miho Ishizu ◽  
Yasumasa Miyazawa ◽  
Tomohiko Tsunoda ◽  
Xinyu Guo
Keyword(s):  
Ocean Acidification ◽  
General Circulation ◽  
Inorganic Carbon ◽  
Dissolved Inorganic Carbon ◽  
Ocean Model ◽  
Western Pacific ◽  
Total Alkalinity ◽  
The North ◽  
North Western ◽  
North Western Pacific

We developed a biogeochemical and carbon model (JCOPE_EC) coupled with an operational ocean model for the North Western Pacific. JCOPE_EC represents ocean acidification indices on the background of the risks due to ocean acidification and our model experiences. It is an off-line tracer model driven by a high-resolution regional ocean general circulation model (JCOPE2M). The results showed that the model adequately reproduced the general patterns in the observed data, including the seasonal variability of chlorophyll-a, dissolved inorganic nitrogen/phosphorus, dissolved inorganic carbon, and total alkalinity. We provide an overview of this system and the results of the model validation based on the available observed data. Sensitivity analysis using fixed values for temperature, salinity, dissolved inorganic carbon and total alkalinity helped us identify which variables contributed most to seasonal variations in the ocean acidification indices, pH and Ωarg. The seasonal variation in the pHinsitu was governed mainly by balances of the change in temperature and dissolved inorganic carbon. The seasonal increase in Ωarg from winter to summer was governed mainly by dissolved inorganic carbon levels.

SS-OCT and FD-OCT System Prototyping Using LabVIEW FPGA

2011 ◽  
Author(s):  
Zach Olson
Keyword(s):  
Real Time ◽  
Graphics Processing Units ◽  
Image Data ◽  
Light Sources ◽  
Field Programmable ◽  
Programmable Gate Arrays ◽  
Labview Fpga ◽  
And Performance ◽  
Control Light ◽  
The Cost

Optical coherence tomography (OCT) techniques have opened up a number of new medical imaging applications in research and clinical applications. Key application areas include cancer research, vascular applications such as imaging arterial plaque, and ophthalmology applications such as pre and post-operative cataract surgery imaging. Emerging Technologies in galvo control, light sources, detector technologies, and parallel hardware-based processing are increasing the quality and performance of images, as well as reducing the cost and footprint of OCT systems. The parallel computing capabilities of field programmable gate arrays (FPGAs), multi-core processors, and graphics processing units (GPUs) have enabled real-time OCT image processing, which provides real-time image data to support surgical procedures.

Organic and inorganic whole system metabolism in two acidified coastal systems in Ireland

2020 ◽  
Author(s):  
Maria Teresa Guerra ◽  
Carlos Rocha
Keyword(s):  
Ocean Acidification ◽  
Dissolved Inorganic Carbon ◽  
Total Alkalinity ◽  
Carbonate System ◽  
Net Community Production ◽  
Coastal Acidification ◽  
Autumn And Winter ◽  
System Metabolism ◽  
Internal Buffer ◽  
Community Production

&lt;p&gt;Organic and inorganic whole system metabolism for two Irish coastal areas were compared to evaluate carbonate system resilience to acidification. The two systems are characterized by contrasting watershed input types and composition. Kinvara Bay is fed by Submarine Groundwater Discharge (SGD) derived from a karstic catchment while Killary Harbour is fed by river discharge draining a siliciclastic catchment. Freshwater sources to sea have distinct Total Alkalinity (TA) and Dissolved Inorganic Carbon (DIC) concentrations, higher and lower than the open ocean, respectively, but both evidence seasonally variable low pH, ranging from 6.20 to 7.50. Retention of TA and DIC was calculated for the two areas using LOICZ methodology. In Kinvara bay, annually averaged retention of DIC was greater than for TA (5 &amp;#215; 10&lt;sup&gt;4&lt;/sup&gt; and 1.5 &amp;#215; 10&lt;sup&gt;5&lt;/sup&gt; mol d&lt;sup&gt;-1&lt;/sup&gt;), suggesting the system is acidifying further. Conversely, Killary Harbour shows negative TA and DIC retention, with DIC:TA &lt;1, suggesting an internal buffer against ocean acidification is operating.&lt;/p&gt;&lt;p&gt;Net Community Production (NCP) was calculated for both systems using Dissolved Oxygen data. Subsequently, we estimated Net Community Calcification (NCC) from the ratio between TA and DIC. NCP was always positive in Killary Harbour with an average of 318 mmol O&lt;sub&gt;2&lt;/sub&gt; m&lt;sup&gt;-2 &lt;/sup&gt;d&lt;sup&gt;-1&lt;/sup&gt; (equivalent to 89 mol C m&lt;sup&gt;-2&lt;/sup&gt; y&lt;sup&gt;-1&lt;/sup&gt;). However, Kinvara Bay shows relatively lower positive NCP in spring and summer (average of 46 mmol O&lt;sub&gt;2&lt;/sub&gt; m&lt;sup&gt;-2&lt;/sup&gt; d&lt;sup&gt;-1&lt;/sup&gt;), but negative NCP in autumn and winter. Therefore, Kinvara Bay&amp;#8217;s Total Organic Carbon (TOC) production was low, at ~21 g m&lt;sup&gt;-2&lt;/sup&gt; y&lt;sup&gt;-1&lt;/sup&gt; and not enough to overcome acidification driven by the SGD source composition. These results emphasize the complexity of interactions between the drivers of coastal acidification rate, affecting our ability to accurately assess the resilience of the carbonate system in these areas to ocean acidification pressure in the future.&lt;/p&gt;

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