Molecular Docking Studies on Gingerol Analogues toward Mushroom Tyrosinase

2020 ◽  
Vol 42 (2) ◽  
pp. 214-214
Author(s):  
Sabrina Benouis Sabrina Benouis ◽  
Fouad Ferkous Fouad Ferkous ◽  
Khairedine Kraim Khairedine Kraim ◽  
Ahmed Allali Ahmed Allali ◽  
Youcef Saihi Youcef Saihi

The gingerol presents the starting point of our work which aims to discover new inhibitors of the tyrosinase enzyme. Therefore, we have studied the activity of gingerol derivatives as inhibitors against mushroom tyrosinase based on the molecular docking. Molecular docking studies were performed on a series of gingerol analogues retrieved from Zinc database (with 70% as similarity threshold). The gingerol analogues were docked within the active site region of mushroom tyrosinase (PDB: 2Y9X) using Molegro Virtual Docker V.5.0. The results of molecular docking studies revealed that some analogues of gingerol have higher Moldock score (in terms of negative energy) than gingerol and the experimentally known inhibitors of tyrosinase, and showed favourable molecular interactions exhibiting common molecular interaction with Ala323, Met280 and Asn260 residues of tyrosinase. Furthermore, the top docked compounds used in this work do not violate the Lipinsky rule of five.

2019 ◽  
Vol 122 ◽  
pp. 289-297 ◽  
Author(s):  
Thaís Meira Menezes ◽  
Sinara Mônica Vitalino de Almeida ◽  
Ricardo Olímpio de Moura ◽  
Gustavo Seabra ◽  
Maria do Carmo Alves de Lima ◽  
...  

PLoS ONE ◽  
2017 ◽  
Vol 12 (5) ◽  
pp. e0178069 ◽  
Author(s):  
Zaman Ashraf ◽  
Muhammad Rafiq ◽  
Humaira Nadeem ◽  
Mubashir Hassan ◽  
Samina Afzal ◽  
...  

Author(s):  
Raghvendra Dubey ◽  
Kushagra Dubey

Background: COVID-19 which is known as the novel coronavirus was reported in December 2019 in Wuhan city, China and many of the patients have been contaminated by environmental contamination and transmission from one human to another. Objective: The objective of work is to establish the inhibitory potential of nicotiflorin, a Kaempferol 3-O-rutinoside flavonoid, against the deadly coronavirus (COVID-19) 6W63 (main protease 3Clpro protein) , using molecular docking approach. Method: The Molegro Virtual Docker software (MVD) with a 30 Å grid resolution was used. The structure was drawn by Chem 3D software and energy minimization was done by the MM2 force field. The protein 6W63 was downloaded from the protein data bank. Molegro modeller was used for score calculations. Result: The molecular docking studies were carried out on nicotiflorin and standard inhibitor X77, where standard inhibitor was observed in a co-crystallized state with main protease 3Clpro protein 6W63. The MolDock score, Rerank Sore and H Bond score of nicotiflorin and standard inhibitor X77 was observed as -173.058, -127.302, -21.9398 and -156.913,- 121.296,-5.7369, respectively. Conclusion: Molecular docking studies have confirmed that the affinity of flavonoid nicotiflorin with the amino acids of the viral protein 6W63 was relatively more than the standard X77. For the effective treatment of novel coronavirus COVID-19, the effectiveness of the identified flavonoid nicotiflorin can further be evaluated for safety and efficacy parameters at both preclinical and clinical stages.


2017 ◽  
Vol 74 ◽  
pp. 187-196 ◽  
Author(s):  
Aamer Saeed ◽  
Parvez Ali Mahesar ◽  
Pervaiz Ali Channar ◽  
Qamar Abbas ◽  
Fayaz Ali Larik ◽  
...  

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