scholarly journals Looking for a successful translocation: the case of Astragalus edulis

2021 ◽  
Vol 42 ◽  
pp. e68048
Author(s):  
Javier Bobo Pinilla ◽  
Noemí López-González ◽  
Armando Caballero ◽  
Julio Peñas de Giles
Keyword(s):  
Genetic Diversity ◽  
Species Conservation ◽  
Geographic Area ◽  
Management Plan ◽  
Western Mediterranean ◽  
Change Scenario ◽  
Entire Area ◽  
Potential Habitat ◽  
Genetic Pool ◽  
Annual Plant Species

Astragalus edulis (Fabaceae) is an endangered annual plant species from the western Mediterranean region. It occurs in the Iberian Peninsula (SE), Morocco (two main locations in the NE and SW), and the easternmost Canary Islands (Lanzarote and Fuerteventura). After a thorough study assessing genetic diversity and phylogeographic patterns, and a proposal of a management plan to preserve the genetic diversity across the entire area of the species, it is about time to go further in the species conservation. It is necessary to recognize genetically impoverished populations to be able to successfully reinforce populations and find realistic places for translocations. For this, Nei’s genetic diversity values were calculated for the three geographic areas and for their populations. Diversity values were further evaluated to calculate the optimal contribution for the populations within each area to maximize the genetic pool. To evaluate whether the optimum habitat for the species is expected to grow or decrease under a climate change scenario, the optimal model of current climatic suitability of A. edulis was projected into the IPCC (2070_RCP8.5) future scenario. The different geographical areas showed similar genetic diversity values. The populations that contribute to maximize the genetic pool in each geographic area were similar, but not equal, to those proposed in previous studies. The future potential habitat for the species shows a significant range decline, which will affect translocation efforts.

scholarly journals Genetic Similarity of Avena sativa L. Varieties as an Example of a Narrow Genetic Pool of Contemporary Cereal Species

Plants ◽  
2021 ◽  
Vol 10 (7) ◽  
pp. 1424
Author(s):  
Magdalena Cieplak ◽  
Sylwia Okoń ◽  
Krystyna Werwińska
Keyword(s):  
Genetic Diversity ◽  
Avena Sativa ◽  
Genetic Similarity ◽  
Breeding Programs ◽  
Central European ◽  
Cereal Species ◽  
Genetic Pool ◽  
Selection Of ◽  
High Genetic Similarity

The assessment of the genetic diversity of cultivated varieties is a very important element of breeding programs. This allows the determination of the level of genetic differentiation of cultivated varieties, their genetic distinctiveness, and is also of great importance in the selection of parental components for crossbreeding. The aim of the present study was to determine the level of genetic diversity of oat varieties currently grown in Central Europe based on two marker systems: ISSR and SCoT. The research conducted showed that both these types of markers were suitable for conducting analyses relating to the assessment of genetic diversity. The calculated coefficients showed that the analyzed cultivars were characterized by a high genetic similarity. However, the UPGMA and PCoA analyses clearly indicated the distinctiveness of the breeding programs conducted in Central European countries. The high genetic similarity of the analyzed forms allow us to conclude that it is necessary to expand the genetic pool of oat varieties. Numerous studies show that landraces may be the donor of genetic variation.

scholarly journals Small population size and low genomic diversity have no effect on fitness in experimental translocations of a wild fish

2019 ◽  
Vol 286 (1916) ◽  
pp. 20191989 ◽  
Author(s):  
M. C. Yates ◽  
E. Bowles ◽  
D. J. Fraser
Keyword(s):  
Genetic Diversity ◽  
Body Size ◽  
Population Size ◽  
Brook Trout ◽  
Habitat Degradation ◽  
Species Conservation ◽  
Empirical Work ◽  
Genomic Diversity ◽  
Effective Population ◽  
Isolated Populations

Little empirical work in nature has quantified how wild populations with varying effective population sizes and genetic diversity perform when exposed to a gradient of ecologically important environmental conditions. To achieve this, juvenile brook trout from 12 isolated populations or closed metapopulations that differ substantially in population size and genetic diversity were transplanted to previously fishless ponds spanning a wide gradient of ecologically important variables. We evaluated the effect of genome-wide variation, effective population size ( N e ), pond habitat, and initial body size on two fitness correlates (survival and growth). Genetic variables had no effect on either fitness correlate, which was determined primarily by habitat (pond temperature, depth, and pH) and initial body size. These results suggest that some vertebrate populations with low genomic diversity, low N e , and long-term isolation can represent important sources of variation and are capable of maintaining fitness in, and ultimately persisting and adapting to, changing environments. Our results also reinforce the paramount importance of improving available habitat and slowing habitat degradation for species conservation.

Effects of mechanized dredging targeting Chamelea gallina, striped venus clams, on the associated discards in the northern Alboran Sea (Western Mediterranean Sea)

2018 ◽  
Vol 99 (3) ◽  
pp. 575-585
Author(s):  
Javier Urra ◽  
Teresa García ◽  
Estefanía León ◽  
Helena Gallardo-Roldán ◽  
Matías Lozano ◽  
...  
Keyword(s):  
Mediterranean Sea ◽  
Management Plan ◽  
Western Mediterranean ◽  
Alboran Sea ◽  
Severe Damage ◽  
Damage Level ◽  
Biological Communities ◽  
Western Mediterranean Sea ◽  
Chamelea Gallina ◽  
Alborán Sea

Mechanized dredging impact on discards was assessed along the northern Alboran Sea (W Mediterranean Sea). Data from 101 dredging operations were analysed for contrasting spatial and seasonal variability of damage, with the use of a three-level damage scale. 4.5% of discarded individuals displayed intermediate damage, whereas 11.3% displayed severe damage. Echinoderms displayed the highest level of damage (~75% of total collected individuals) and Echinocardium cf. mediterraneum was the most susceptible discarded species (85% with severe damage), followed by bivalves (7.3%) and crustaceans (3.3%). The target Chamelea gallina showed a low proportion of damaged individuals, probably due to their thick protective shell, which promotes the survival of discarded undersized target individuals. Spatial differences in damage level on discards were linked to some gear characteristics, to the higher amount of gravels and to longer tow durations, whereas damage was generally higher in cold months and partly related to higher quantities of hard shelled molluscs, in both cases increasing the abrasion and damage to retained organisms. Data suggest that dredges with a lower number of narrower iron teeth and towed for a shorter time could decrease the damage rate in discards of this fishery. A spatial management plan based on the type of grounds would be useful in order to improve efficiency of these fisheries and minimize their impact to soft bottoms with different commercial catches and biological communities.

scholarly journals Feeding ground indications are based on species, seagrass density and existence of Dugong dugon in Hiri Island Sea, North Maluku, Indonesia

2021 ◽  
Vol 890 (1) ◽  
pp. 012058
Author(s):  
N Akbar ◽  
I Marus ◽  
R Ridwan ◽  
A Baksir ◽  
R E Paembonan ◽  
...  
Keyword(s):  
Species Conservation ◽  
Species Density ◽  
Survey Method ◽  
Conservation Policies ◽  
Potential Habitat ◽  
Foraging Area ◽  
Seagrass Ecosystem ◽  
Seagrass Ecosystems ◽  
Halodule Uninervis ◽  
Management And Conservation

Abstract Seagrass ecosystems are located between mangrove ecosystems and coral reefs. Seagrass ecosystems are habitats and foraging area for many marine organisms. Eco-biological cycles in seagrass ecosystems are important for maintaining populations of many organisms. Seagrass at Hiri Island is distributed horizontally along the coast. This island is also a location where Dugong dugon is found North Maluku. Dugong dugon is a vurneable species that has been included in the IUCN and Appendix I Cites. This study aimed to identify species, density of seagrass and existence of Dugong dugong. The survey method used quadratic transect method to collect seagrass data. The Results found 6 species of seagrass at Hiri Island. Five species of those seagrass (Cymodocea serrulata, Cymodecea rotundata, Halodule uninervis, Halodule pinifolia, Halophila spinulosa) are known as food of Dugong dugon. The highest species density was shown by Halodule uninervis. The presence of Dugong dugon and its feeding trail was found during field survey. Information on seagrass species and Dugong dugon sightings location can be used for endangered species conservation policies. Management and conservation efforts need to be done to maintain seagrass ecosystem and Dugong dugon potential habitat at Hiri Island.

scholarly journals Short Communication: Genetic structure of Longtail Tuna Thunnus tonggol (Bleeker, 1851) in Java Sea, Indonesia

2020 ◽  
Vol 21 (8) ◽  
Author(s):  
M. DANIE AL MALIK ◽  
NI PUTU DIAN PERTIWI ◽  
ANDRIANUS SEMBIRING ◽  
NI LUH ASTRIA YUSMALINDA ◽  
ENEX YUNIARTI NINGSIH ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Structure ◽  
Short Communication ◽  
Management Plan ◽  
P Value ◽  
High Genetic Diversity ◽  
Population Structure Analysis ◽  
Fisheries Sustainability ◽  
Java Sea ◽  
Longtail Tuna

Abstract. Al Malik MD, Pertiwi NPD, Sembiring A, Yusmalinda NLA, Ningsing EY, Astarini IA. 2020. Short Communication: Genetic structure of Longtail Tuna Thunnus tonggol (Bleeker, 1851) in Java Sea, Indonesia. Biodiversitas 21: 3637-3643. Thunnus tonggol (Longtail Tuna) is an economically important fish found in Indonesia waters, however, the information regarding this fish is lacking. Known to be a neritic fish and found in shallow water, Java Sea is one of the ideal habitats for T. tonggol species. Due to high fishing rates activities in Java Sea, a better management plan to ensure the conservation and fisheries sustainability around this area is needed, especially to protect T. tonggol population. In order to complete the Indonesian tuna data, we aim to study the diversity and genetic structure of T. tonggol in Java Sea at three different locations; i.e. Semarang, Banjarmasin, and Jakarta. In this study, population genetic methods with the marker of mitochondrial DNA (mtDNA) control region were used in population structure analysis. A total of 115 specimens were collected from the fish market around the area of study locations and amplified using polymerase chain reaction (PCR) and sequenced using Sanger methods. The result showed genetic diversity (Hd) value of 0.99366, and nucleotide diversity (π) value of 0.01906. Both of these values indicated high genetic diversity. Population analyses using Analysis of Molecular Variance (AMOVA) showed nonsignificant differences between the three populations of study (mixing population), with the ΦST value of 0,00375 (p-value > 0.05). Based on this result, the fisheries management for T. tonggol in Java Sea needs to be managed as one single population management.

Captive management and the maintenance of genetic diversity in a vulnerable marsupial, the greater bilby

2015 ◽  
Vol 37 (2) ◽  
pp. 170 ◽  
Author(s):  
Emily J. Miller ◽  
Mark D. B. Eldridge ◽  
Keith Morris ◽  
Neil Thomas ◽  
Catherine A. Herbert
Keyword(s):  
Genetic Diversity ◽  
Captive Breeding ◽  
Natural Habitat ◽  
Species Conservation ◽  
Molecular Data ◽  
Breeding Programs ◽  
Captive Populations ◽  
Genetic Impact ◽  
Captive Breeding Programs

The endemic Australian greater bilby (Macrotis lagotis) is a vulnerable and iconic species. It has declined significantly due to habitat loss, as well as competition and predation from introduced species. Conservation measures include a National Recovery Plan that incorporates several captive breeding programs. Two of these programs were established within 12 months of one another (1997/98), with the same number and sex ratio of founding individuals, but executed different breeding strategies: (1) unmanipulated mating in semi–free range natural habitat versus (2) minimising mean kinship in large enclosures, with the supplementation of new individuals into both populations. This study evaluates the long-term genetic impact of these programs and examines the congruency between the pedigree studbook estimates of diversity and molecular data. Our data demonstrate that genetic diversity was maintained in both populations, with the supplementation of new individuals contributing to the gene pool. The studbook estimates of diversity and inbreeding are not consistent with the microsatellite data and should not solely be relied upon to evaluate the genetic health of captive populations. Our analyses suggest that captive breeding programs may not require costly and intensive management to effectively maintain long-term genetic diversity in a promiscuous species.

Genetic diversity and population structure of Tarek (Alburnus tarichi), an endemic species to the Lake Van basin, Turkey

2021 ◽  
Vol 34 ◽  
pp. 3
Author(s):  
Yılmaz Çiftci ◽  
Oğuzhan Eroğlu ◽  
Şirin Firidin ◽  
Hacı Savaş ◽  
Yusuf Bektaş
Keyword(s):  
Genetic Diversity ◽  
Genetic Variation ◽  
Genetic Relationships ◽  
Significance Test ◽  
Management Plan ◽  
Lake Van ◽  
Essential Information ◽  
Low Level ◽  
Lake Van Basin ◽  
Sustainable Fishery

In this study, the genetic relationships of 804 tarek (Alburnus tarichi) samples from a total of 18 populations, including the potamodromus and resident individuals from Lake Van basin in eastern Turkey, were studied by using nine microsatellite loci. A total of 93 alleles was detected, and the average number of alleles per locus was 10.3 ± 3.39. The mean estimated observed and expected heterozygosity were 0.340 ± 0.016 and 0.362 ± 0.015, respectively, which indicated a low level of polymorphism. After Bonferroni correction (P < 0.0027), the multi-locus test applied to each population revealed that 12 out of 18 populations were in Hardy-Weinberg equilibrium (HWE) (P = 0.0120–0.9981). Analysis of molecular variance (AMOVA) showed more than 76% genetic variability within individuals and 19% among populations, which was significantly higher than zero (FST = 0.19), and furthermore, a low level of genetic variation was observed among individuals within populations (4.84%: FIS = 0.06). Bayesian clustering analysis indicated that the total genetic variation grouped into 3 clusters. Additionally, the significance test results revealed that 11 of the 18 populations are threatened with extinction due to recent bottleneck events.We conclude that the tarek populations from the Lake Van basin can be classified into distinct genetic groups, based on microsatellite information. In addition, our results provide essential information for the development of a management plan that conserves the tarek's genetic diversity and achieves a sustainable fishery.

Genealogical relationship inference to identify areas of intensive poaching of the Orange-fronted Parakeet (Eupsittula canicularis)

BMC Zoology ◽  
2021 ◽  
Vol 6 (1) ◽  
Author(s):  
Gabriela Padilla-Jacobo ◽  
Tiberio C. Monterrubio-Rico ◽  
Horacio Cano-Camacho ◽  
María Guadalupe Zavala-Páramo
Keyword(s):  
Genetic Diversity ◽  
Dna Sequences ◽  
Haplotype Diversity ◽  
Coastal Region ◽  
Central American ◽  
Illegal Trade ◽  
Wild Populations ◽  
High Genetic Diversity ◽  
Genealogical Relationship ◽  
Genetic Pool

Abstract Background The Orange-fronted Parakeet (Eupsittula canicularis) is the Mexican psittacine that is most captured for the illegal pet trade. However, as for most wildlife exploited by illegal trade, the genetic diversity that is extracted from species and areas of intensive poaching is unknown. In this study, we analyzed the genetic diversity of 80 E. canicularis parakeets confiscated from the illegal trade and estimated the level of extraction of genetic diversity by poaching using the mitochondrial DNA sequences of cytochrome b (Cytb). In addition, we analyzed the genealogical and haplotypic relationships of the poached parakeets and sampled wild populations in Mexico, as a strategy for identifying the places of origin of poached parakeets. Results Poached parakeets showed high haplotype diversity (Hd = 0.842) and low nucleotide diversity (Pi = 0.00182). Among 22 haplotypes identified, 18 were found exclusively in 37 individuals, while four were detected in the remaining 43 individuals and shared with the wild populations. A rarefaction and extrapolation curve revealed that 240 poached individuals can include up to 47 haplotypes and suggested that the actual haplotype richness of poached parakeets is higher than our analyses indicate. The geographic locations of the four haplotypes shared between poached and wild parakeets ranged from Michoacan to Sinaloa, Mexico. However, the rare haplotypes detected in poached parakeets were derived from a recent genetic expansion of the species that has occurred between the northwest of Michoacan and the coastal region of Colima, Jalisco and southern Nayarit, Mexico. Conclusions Poached parakeets showed high genetic diversity, suggesting high extraction of the genetic pool of the species in central Mexico. Rarefaction and extrapolation analyses suggest that the actual haplotype richness in poached parakeets is higher than reflected by our analyses. The poached parakeets belong mainly to a very diverse genetic group of the species, and their most likely origin is between northern Michoacan and southern Nayarit, Mexico. We found no evidence that poachers included individuals from Central American international trafficking with individuals from Mexico in the sample.

The genetic diversity and distinctiveness of the Yellow-footed Rock-wallaby Petrogale xanthopus (Gray, 1854) in New South Wales

1998 ◽  
Vol 4 (2) ◽  
pp. 164 ◽  
Author(s):  
Lisa C. Pope ◽  
Andy Sharp ◽  
Craig Moritz
Keyword(s):  
Genetic Diversity ◽  
Threatened Species ◽  
New South ◽  
New South Wales ◽  
Species Conservation ◽  
Habitat Disturbance ◽  
European Settlement ◽  
South Wales ◽  
Feral Animals ◽  
Species Being

Yellow-footed Rock-wallabies (YFRW) Petrogale xanthopus have declined in numbers since European settlement from past hunting for skins, habitat disturbance and predation and competition with feral animals (Gordon et al. 1978, 1993; Copley 1983; Henzell 1990). This has led to the species being classed as potentially vulnerable to extinction in Australia (Kennedy 1992), and endangered in New South Wales (Schedule 1, Threatened Species Conservation Act, 1995).

Demographic structure, genetic diversity and habitat distribution of the endangered, Australian rainforest tree Macadamia jansenii help facilitate an introduction program

2011 ◽  
Vol 59 (3) ◽  
pp. 215 ◽  
Author(s):  
Alison Shapcott ◽  
Michael Powell
Keyword(s):  
Genetic Diversity ◽  
Wild Population ◽  
Local Area ◽  
Habitat Model ◽  
Population Census ◽  
Suitable Habitat ◽  
Niche Modelling ◽  
Potential Habitat ◽  
Habitat Analysis ◽  
Model Combining

Macadamia jansenii is endemic to south-east Queensland, Australia, and is currently known from a single population 180 km north of the nearest wild population of its congener, the edible Macadamia integrifolia. A recently developed Macadamia recovery plan identified that this population was under significant threat and recommended a reintroduction program to safeguard against chance extinction of the single wild population. This study undertook demographic population census surveys, genetic analysis, habitat analysis and niche modelling to determine the potential long-term viability for the species, and to guide search and reintroduction programs. We expanded the known population size of the species to ~60 individuals (1 m and taller) spread over a 900-m distance along a single creek clumped into three subpopulations. There was moderate genetic diversity in the species and the subpopulations showed little genetic differentiation. We developed a potential habitat model combining abiotic variables and vegetation associations, and mapped areas of potentially suitable habitat for M. jansenii within its local area. These maps are being used to target searches for other populations and to guide the location of introduction populations.

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