scholarly journals Short Communication Genome-wide identification and characterization of simple sequence repeat loci in grape phylloxera, Daktulosphaira vitifoliae

2012 ◽  
Vol 11 (2) ◽  
pp. 1409-1416 ◽  
Author(s):  
H. Lin ◽  
M.S. Islam ◽  
D.W. Ramming
Keyword(s):  
Simple Sequence Repeat ◽  
Short Communication ◽  
Sequence Repeat ◽  
Daktulosphaira Vitifoliae ◽  
Grape Phylloxera ◽  
Genome Wide ◽  
Identification And Characterization ◽  
Simple Sequence

Identification and characterization of simple sequence repeat (SSR) markers from Fragaria x ananassa expressed sequences

2006 ◽  
Vol 6 (2) ◽  
pp. 319-322 ◽  
Author(s):  
ANDREW KENIRY ◽  
CLARE J. HOPKINS ◽  
ERICA JEWELL ◽  
BRUCE MORRISON ◽  
GERMAN C. SPANGENBERG ◽  
...  
Keyword(s):  
Ssr Markers ◽  
Simple Sequence Repeat ◽  
Fragaria X Ananassa ◽  
Sequence Repeat ◽  
Identification And Characterization ◽  
Simple Sequence

scholarly journals Genome-Wide Characterization of Simple Sequence Repeat (SSR) Loci in Chinese Jujube and Jujube SSR Primer Transferability

PLoS ONE ◽  
2015 ◽  
Vol 10 (5) ◽  
pp. e0127812 ◽  
Author(s):  
Jing Xiao ◽  
Jin Zhao ◽  
Mengjun Liu ◽  
Ping Liu ◽  
Li Dai ◽  
...  
Keyword(s):  
Simple Sequence Repeat ◽  
Sequence Repeat ◽  
Chinese Jujube ◽  
Genome Wide ◽  
Ssr Loci ◽  
Simple Sequence

Identification and characterization of simple sequence repeat markers from Brassica napus expressed sequences

2007 ◽  
Vol 7 (5) ◽  
pp. 886-889 ◽  
Author(s):  
JACQUELINE BATLEY ◽  
CLARE J. HOPKINS ◽  
NOEL O. I. COGAN ◽  
MELANIE HAND ◽  
ERICA JEWELL ◽  
...  
Keyword(s):  
Brassica Napus ◽  
Simple Sequence Repeat ◽  
Sequence Repeat ◽  
Simple Sequence Repeat Markers ◽  
Identification And Characterization ◽  
Simple Sequence

Identification and characterization of simple sequence repeat (SSR) markers derived in silico from Brassica oleracea genome shotgun sequences

2006 ◽  
Vol 6 (4) ◽  
pp. 1191-1194 ◽  
Author(s):  
BENJAMIN BURGESS ◽  
HAYLEY MOUNTFORD ◽  
CLARE J. HOPKINS ◽  
CHRISTOPHER LOVE ◽  
ALISON E. LING ◽  
...  
Keyword(s):  
Brassica Oleracea ◽  
Ssr Markers ◽  
In Silico ◽  
Simple Sequence Repeat ◽  
Sequence Repeat ◽  
Identification And Characterization ◽  
Simple Sequence

scholarly journals Development and characterization of non-coding RNA based simple sequence repeat markers in Capsicum species

Genomics ◽  
2020 ◽  
Vol 112 (2) ◽  
pp. 1554-1564 ◽  
Author(s):  
Vandana Jaiswal ◽  
Abdul Rawoof ◽  
Meenakshi Dubey ◽  
Sushil Satish Chhapekar ◽  
Vineet Sharma ◽  
...  
Keyword(s):  
Simple Sequence Repeat ◽  
Sequence Repeat ◽  
Simple Sequence Repeat Markers ◽  
Non Coding Rna ◽  
Capsicum Species ◽  
Simple Sequence

Characterization of expressed sequence tag-derived simple sequence repeat markers for 17 Linum species

Botany ◽  
2010 ◽  
Vol 88 (5) ◽  
pp. 537-543 ◽  
Author(s):  
Yong-Bi Fu ◽  
Gregory W. Peterson
Keyword(s):  
Simple Sequence Repeat ◽  
Expressed Sequence Tag ◽  
Sequence Repeat ◽  
Simple Sequence Repeat Markers ◽  
Linum Usitatissimum L ◽  
Evolutionary Studies ◽  
Expressed Sequence ◽  
Simple Sequence ◽  
Cultivated Flax

One major challenge in genetic and evolutionary studies of wild flax species is the lack of informative molecular markers. A set of 100 informative expressed sequence tag-derived simple sequence repeat (EST-SSR) primer pairs developed in cultivated flax ( Linum usitatissimum L.) were characterized on 35 Linum accessions representing 17 Linum species for their transferability to other Linum species. Ninety-nine primer pairs displayed scorable polymorphisms across 35 Linum samples and generated 627 bands likely from 121 loci. About 50% of the detected bands occurred only in three or fewer samples. A total of 393 bands, likely from 116 loci, were detected by 97 primer pairs in Linum bienne Mill. samples, but only up to 60 bands, likely from up to 39 loci, were revealed by 6 to 37 primer pairs in the samples of the other 15 Linum species. The L. bienne samples displayed 23.7% more EST-SSR variation than the L. usitatissimum samples. These characterized EST-SSR markers should be useful for future genetic diversity and evolutionary studies of Linum species, particularly for the progenitor of cultivated flax.

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