scholarly journals Molecular phylogenetic study of Cardamine amaraeformis Nakai using nuclear and chloroplast DNA markers

2012 ◽  
Vol 11 (3) ◽  
pp. 3086-3090 ◽  
Author(s):  
M.A. Ali ◽  
J. Lee ◽  
S.Y. Kim ◽  
F.M.A. Al-Hemaid
Keyword(s):  
Chloroplast Dna ◽  
Dna Markers ◽  
Phylogenetic Study ◽  
Molecular Phylogenetic Study ◽  
Molecular Phylogenetic ◽  
Chloroplast Dna Markers

scholarly journals Phylogenetic position of Miliusa vidalii (Miliuseae, Annonaceae) inferred from chloroplast DNA and morphology

2020 ◽  
Vol 13 (2) ◽  
Keyword(s):  
Bayesian Inference ◽  
Chloroplast Dna ◽  
Maximum Parsimony ◽  
Sequence Data ◽  
Phylogenetic Position ◽  
Phylogenetic Study ◽  
Taxon Sampling ◽  
Molecular Phylogenetic Study ◽  
Molecular Phylogenetic ◽  
Cpdna Sequence

A molecular phylogenetic study was conducted to determine the position of the Philippine endemic Miliusa vidalii in the tribe Miliuseae of family Annonaceae utilizing the combined cpDNA sequence data (trnL-F-matK-ndhF-psbA-trnH-ycf1). Bayesian inference and Maximum parsimony analyses revealed a robustly supported monophyletic Miliusa clade (PP=1.00; BS=93%). Miliusa vidalii nested within clade D (PP=1.00; BS=85%) shares similar features by having terminal inflorescences and a notably long pedicel. M. vidalii is resolved as sister to M. lanceolata, which shares morphological features such as length of pedicels, number of secondary veins, shape of leaf apex, and apiculate monocarp. This present study revealed that M. vidalii possesses a conspicuous glandular structure in the inner petals, a feature that is common only to species found in clade A. Therefore, increased taxon sampling is necessary to construct a stronger phylogenetic relationship within the genus.

Description of Ditylenchus acantholimonis n. sp. (Rhabditida: Anguinidae) from Iran, a morphological and molecular phylogenetic study

Nematology ◽  
2021 ◽  
pp. 1-10
Author(s):  
Samira Aliverdi ◽  
Ebrahim Pourjam ◽  
Majid Pedram
Keyword(s):  
New Species ◽  
Rhizosphere Soil ◽  
Phylogenetic Analyses ◽  
Phylogenetic Study ◽  
Pharyngeal Bulb ◽  
Lateral Field ◽  
Molecular Phylogenetic Study ◽  
Molecular Phylogenetic ◽  
Golestan Province ◽  
Tail Tip

Summary Ditylenchus acantholimonis n. sp. is described based on morphological, morphometric and molecular characters. It was isolated from the rhizosphere soil of Acantholimon sp. in Golestan province, Iran, and is mainly characterised by having four lines in the lateral field, a pyriform to bottle-shaped offset pharyngeal bulb, post-vulval uterine sac 36.6-56.1% of the vulva to anus distance long, and a subcylindrical to conical tail with widely rounded tip. It is further characterised by short to medium-sized females, 480-617 μm long, with a fine stylet having small rounded knobs, V = 80.8-83.6, c = 11.0-13.8, c′ = 3.3-4.6, and males with 16.0-17.0 μm long spicules. The new species was morphologically compared with six species having four lines in their lateral field, rounded tail tip and comparable morphometric data namely: D. dipsacoideus, D. emus, D. exilis, D. paraparvus, D. sturhani, and D. solani. It was also compared with two species, D. ferepolitor and D. angustus, forming a maximally supported clade in the 18S tree. The phylogenetic analyses using the maximal number of Anguinidae and several Sphaerularioidea genera based upon partial 18S and 28S rDNA D2-D3 sequences revealed that Ditylenchus is polyphyletic. In the 18S tree, the new species formed a clade with D. ferepolitor (KJ636374) and D. angustus (AJ966483); in the 28S tree it formed a poorly supported clade with D. phyllobios (KT192618) and Ditylenchus sp. (MG865719).

scholarly journals A molecular phylogenetic study of the caecal fluke of poultry, Postharmostomum commutatum (= P. gallinum) (Trematoda: Brachylaimidae)

2018 ◽  
Vol 117 (12) ◽  
pp. 3927-3934 ◽  
Author(s):  
Marisa C. Valadão ◽  
Beatriz C. M. Silva ◽  
Danimar López-Hernández ◽  
Jackson V. Araújo ◽  
Sean A. Locke ◽  
...  
Keyword(s):  
Phylogenetic Study ◽  
Molecular Phylogenetic Study ◽  
Molecular Phylogenetic

Molecular phylogeny of Pemphiginae (Hemiptera: Aphididae) inferred from nuclear gene EF-1α sequences

2008 ◽  
Vol 98 (5) ◽  
pp. 499-507 ◽  
Author(s):  
H.C. Zhang ◽  
G.X. Qiao
Keyword(s):  
Phylogenetic Analysis ◽  
Molecular Phylogeny ◽  
Host Specificity ◽  
Nuclear Gene ◽  
Molecular Data ◽  
Molecular Phylogenetic Analysis ◽  
Phylogenetic Study ◽  
Primary Host ◽  
Molecular Phylogenetic Study ◽  
Molecular Phylogenetic

AbstractThree traditional tribes of Fordini, Pemphigini and Eriosomatini comprise Pemphiginae, and there are two subtribes in Fordini and Pemphigini, respectively. Most of the species in this subfamily live heteroecious holocyclic lives with distinct primary host specificity. The three tribes of Pemphigini (except Prociphilina), Eriosomatini and Fordini use three families of plants, Salicaceae (Populus), Ulmaceae (Ulums) and Anacardiaceae (Pistacia and Rhus), as primary hosts, respectively, and form galls on them. Therefore, the Pemphigids are well known as gall makers, and their galls can be divided into true galls and pseudo-galls in type. We performed the first molecular phylogenetic study of Pemphiginae based on molecular data (EF-1α sequences). Results show that Pemphiginae is probably not a monophylum, but the monophyly of Fordini is supported robustly. The monophyly of Pemphigini is not supported, and two subtribes in it, Pemphigina and Prociphilina, are suggested to be raised to tribal level, equal with Fordini and Eriosomatini. The molecular phylogenetic analysis does not show definite relationships among the four tribes of Pemphiginae, as in the previous phylogenetic study based on morphology. It seems that the four tribes radiated at nearly the same time and then evolved independently. Based on this, we can speculate that galls originated independently four times in the four tribes, and there is no evidence to support that true galls are preceded by pseudo-galls, as in the case of thrips and willow sawflies.

scholarly journals Splitting the Pisonia birdcatcher trees: re-establishment of Ceodes and Rockia (Nyctaginaceae, Pisonieae)

PhytoKeys ◽  
2020 ◽  
Vol 152 ◽  
pp. 121-136
Author(s):  
Elson Felipe Sandoli Rossetto ◽  
Marcos A. Caraballo-Ortiz
Keyword(s):  
Original Description ◽  
General Distribution ◽  
Phylogenetic Study ◽  
Natural Classification ◽  
Line Drawings ◽  
Dichotomous Key ◽  
Representative Species ◽  
Molecular Phylogenetic Study ◽  
Molecular Phylogenetic ◽  
Reproductive Characters

Several genera of Nyctaginaceae, currently merged under Pisonia, have been described for the Indo-Pacific region. Results from a recent molecular phylogenetic study of tribe Pisonieae showed that Pisonia is non-monophyletic and comprises three well-supported lineages: one including typical Pisonia and allies (Pisonia s.str.), a clade of species which corresponds to the original description of Ceodes and a third lineage whose single representative was formerly treated under the monotypic genus Rockia. Thus, as part of an effort to achieve a natural classification for tribe Pisonieae, this work proposes to re-establish Ceodes and Rockia to accommodate taxa with inconspicuous glands on anthocarps, recognising 21 species (20 for the former and one for the latter), of which 16 are new combinations: Ceodes amplifoliacomb. nov., Ceodes artensiscomb. nov., Ceodes austro-orientaliscomb. nov., Ceodes browniicomb. nov., Ceodes caulifloracomb. nov., Ceodes coronatacomb. nov., Ceodes diandracomb. nov., Ceodes gigantocarpacomb. nov., Ceodes gracilescenscomb. nov., Ceodes lanceolatacomb. nov., Ceodes merytifoliacomb. nov., Ceodes muellerianacomb. nov., Ceodes rapaensiscomb. nov., Ceodes sechellarumcomb. nov., Ceodes taitensiscomb. nov. and Ceodes wagnerianacomb. nov. A general distribution of each species recognised in this work is also included, along with line drawings and colour pictures of representative species of Ceodes, Pisonia and Rockia and an updated dichotomous key based on reproductive characters for the nine genera (Ceodes, Cephalotomandra, Grajalesia, Guapira, Neea, Neeopsis, Pisonia, Pisoniella and Rockia) comprising the tribe Pisonieae. Résumé Plusieurs genres de Nyctaginaceae actuellement fusionnés sous Pisonia ont été décrits pour la région Indo-Pacifique. Les résultats d’une récente étude phylogénétique moléculaire de la tribu Pisonieae ont montré que Pisonia est non monophylétique et comprend trois lignées bien supportées: une comprenant Pisonia typique et ses alliés (Pisonia s.str.), un clade d’espèces qui correspond à la description originale de Ceodes et une troisième lignée dont l’unique représentant était auparavant traité sous le genre monotypique Rockia. Ainsi, dans le cadre d’un effort pour parvenir à une classification naturelle de la tribu Pisonieae, ce travail proposons de rétablir les Ceodes et Rockia pour accueillir des taxons avec des glandes discrètes sur les anthocarpes, reconnaissant 21 espèces (20 pour les premières et une pour les dernières), dont 16 sont de nouvelles combinaisons: Ceodes amplifoliacomb. nov., Ceodes artensiscomb. nov., Ceodes austro-orientaliscomb. nov., Ceodes browniicomb. nov., Ceodes caulifloracomb. nov., Ceodes coronatacomb. nov., Ceodes diandracomb. nov., Ceodes gigantocarpacomb. nov., Ceodes gracilescenscomb. nov., Ceodes lanceolatacomb. nov., Ceodes merytifoliacomb. nov., Ceodes muellerianacomb. nov., Ceodes rapaensiscomb. nov., Ceodes sechellarumcomb. nov., Ceodes taitensiscomb. nov. et Ceodes wagnerianacomb. nov. Une distribution générale de chaque espèce reconnue dans ce travail est également incluse, ainsi que des dessins au trait et des images en couleur des espèces représentatives de Ceodes, Pisonia et Rockia, et préparé une clé dichotomique mise à jour basée sur les caractères reproductifs des neuf genres (Ceodes, Cephalotomandra, Grajalesia, Guapira, Neea, Neeopsis, Pisonia, Pisoniella et Rockia) comprenant la tribu Pisonieae.

scholarly journals Conservation Pattern, Homology Modeling and Molecular Phylogenetic Study of BMP Ligands

2016 ◽  
Vol 9 (2) ◽  
pp. 70-80
Author(s):  
Md. Shaifur Rahman ◽  
Sudarshan Chatterjee ◽  
Madhuri Haque ◽  
Hossen M. Jamil ◽  
Naznin Akhtar ◽  
...  
Keyword(s):  
Homology Modeling ◽  
Phylogenetic Study ◽  
Molecular Phylogenetic Study ◽  
Molecular Phylogenetic ◽  
Conservation Pattern
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