scholarly journals Floristic, Structural, and Conservation Analysis of the Habitats Occupied by Dupont’s Lark, <i>Chersophilus duponti</i>, in the Northwest Edge of Its Distributional Range

2016 ◽  
Vol 06 (09) ◽  
pp. 517-528 ◽  
Author(s):  
Juan Luis Aguirre ◽  
Carlos Talabante ◽  
Alejandro Aparicio ◽  
Manuel Peinado
Keyword(s):  
Conservation Analysis ◽  
Distributional Range ◽  
Dupont’S Lark

scholarly journals Novel FGFR1 Variants Are Associated with Congenital Scoliosis

Genes ◽  
2021 ◽  
Vol 12 (8) ◽  
pp. 1126
Author(s):  
Shengru Wang ◽  
Xiran Chai ◽  
Zihui Yan ◽  
Sen Zhao ◽  
Yang Yang ◽  
...  
Keyword(s):  
Protein Function ◽  
Hypogonadotropic Hypogonadism ◽  
Congenital Scoliosis ◽  
Wild Type ◽  
Conservation Analysis ◽  
Gene Assay ◽  
Protein Expressions ◽  
Patient Series ◽  
Reduced Activity

FGFR1 encodes a transmembrane cytokine receptor, which is involved in the early development of the human embryo and plays an important role in gastrulation, organ specification and patterning of various tissues. Pathogenic FGFR1 variants have been associated with Kallmann syndrome and hypogonadotropic hypogonadism. In our congenital scoliosis (CS) patient series of 424 sporadic CS patients under the framework of the Deciphering disorders Involving Scoliosis and COmorbidities (DISCO) study, we identified four unrelated patients harboring FGFR1 variants, including one frameshift and three missense variants. These variants were predicted to be deleterious by in silico prediction and conservation analysis. Signaling activities and expression levels of the mutated protein were evaluated in vitro and compared to that of the wild type (WT) FGFR1. As a result, the overall protein expressions of c.2334dupC, c.2339T>C and c.1261A>G were reduced to 43.9%, 63.4% and 77.4%, respectively. By the reporter gene assay, we observed significantly reduced activity for c.2334dupC, c.2339T>C and c.1261A>G, indicating the diminished FGFR1 signaling pathway. In conclusion, FGFR1 variants identified in our patients led to only mild disruption to protein function, caused milder skeletal and cardiac phenotypes than those reported previously.

Leaf litter copepods from a cloud forest mountain top in Honduras (Copepoda: Cyclopidae, Canthocamptidae)

Zootaxa ◽  
2013 ◽  
Vol 3630 (2) ◽  
pp. 270-290 ◽  
Author(s):  
FRANK FIERS ◽  
MERLIJN JOCQUE
Keyword(s):  
Central America ◽  
Leaf Litter ◽  
National Park ◽  
New World ◽  
Cloud Forest ◽  
Mountainous Regions ◽  
Distributional Range ◽  
Litter Sample ◽  
Forest Mountain

Five different species of Copepoda were extracted from a leaf litter sample collected on the top (at 2000 m a.s.l.) of a cloud forested mountain in El Cusuco National Park, Honduras. Three of them, one Cyclopidae and two Canthocamptidae are new to science, and are described herein. Olmeccyclops hondo sp. nov. is the second representative thus far known of this New World genus. Moraria catracha sp. nov. and Moraria cusuca sp. nov. are the first formally described members of the genus occurring in Central America. The concept of a “Moraria-group” is considered to be an artificial grouping and is limited here to the genera Moraria and Morariopsis only. The distributional range of this group is essentially Holarctic, with the mountainous regions inHonduras, and probably in westNicaragua, as the southernmost limits in theNew World.

scholarly journals Conservation analysis and pathogenicity prediction of mutant genes of ectodysplasin a

2018 ◽  
Vol 19 (1) ◽  
Author(s):  
Fangqi He ◽  
Hongfeng Wang ◽  
Xiaoyu Zhang ◽  
Qingping Gao ◽  
Feng Guo ◽  
...  
Keyword(s):  
Conservation Analysis ◽  
Pathogenicity Prediction ◽  
Mutant Genes

scholarly journals Fate of unproductive and unattractive habitats: recent changes in Iberian steppes and their effects on endangered avifauna

2006 ◽  
Vol 33 (3) ◽  
pp. 223-232 ◽  
Author(s):  
PAOLA LAIOLO ◽  
JOSÉ L. TELLA
Keyword(s):  
Primary Productivity ◽  
Western Europe ◽  
Agricultural Development ◽  
Public Awareness ◽  
Species Dispersal ◽  
Ecological Value ◽  
Shrub Steppe ◽  
Steppe Birds ◽  
Dupont’S Lark ◽  
The Impact

Steppe ecosystems worldwide are affected by agricultural development and generally unprotected. Spanish shrub-steppes contain endangered avifauna, and this paper analyses their state of habitat conservation, the changes that have occurred in the last decade, primary productivity and its relationship with land exploitation and the richness of threatened birds, and avifauna responses to habitat loss. Fifty steppe remnants distributed throughout Spain and inhabited by Dupont's lark Chersophilus duponti, an endangered passerine representative of shrub steppe-like habitat, were studied. The study fragments were generally affected by agriculture exploitation, and steppe cover had significantly decreased in several isolated patches during the period 1991–1999. Steppe habitat recovered slightly in areas with low plant productivity indices, and decreased in extent in the most productive areas, in line with EU (European Union) agricultural policy recommendations to abandon marginal land of low productivity. The low overall primary productivity of Iberian steppes opened the way to industrial activities (mining, waste collection and wind-farming), which in the study areas occurred more frequently in steppe than in other habitat types that are more attractive to the public (woodland) or more productive (farmland). The emerging wind industry little affected the study plots, but the presence of anemometers suggests that the impact is likely to increase in the near future, especially in the largest steppelands. Dupont's lark was sensitive to the fragmentation of its habitat; crowding occurred in isolated and small fragments, possibly as a consequence of habitat constraints and species dispersal dynamics. Fragments inhabited by Dupont's lark also hosted other steppe birds with a high conservation value; the community of endangered birds, mostly adapted to arid conditions, was richest in the less productive sites. Only four shrub-steppe fragments are given some kind of protection throughout Spain, testifying to the limited public awareness about the value of this habitat. Urgent action is required to restore this habitat through abandonment of less productive farmland, and to create a network of protected and connected steppelands, in order to assure the long-term viability of steppe specialists and the preservation of a habitat that is unique in Western Europe. This should be coupled to an effort to increase social consciousness of the ecological value of steppes and arid landscapes in general.

scholarly journals Conservation analysis of SARS-CoV-2 spike suggests complicated viral adaptation history from bat to human

2020 ◽  
Vol 2020 (1) ◽  
pp. 290-303
Author(s):  
Kuan Cheok Lei ◽  
Xiaohua Douglas Zhang
Keyword(s):  
Severe Acute Respiratory Syndrome ◽  
Mutation Analysis ◽  
Evolutionary History ◽  
Sequence Similarity ◽  
Similarity Analysis ◽  
Current Form ◽  
Conservation Analysis ◽  
Spike Sequences ◽  
History Of ◽  
Spike Sequence

Abstract Background The current coronavirus disease 2019 (COVID-19) pandemic, caused by severe acute respiratory syndrome (SARS)-CoV-2, has become the most devastating public health emergency in the 21st century and one of the most influential plagues in history. Studies on the origin of SARS-CoV-2 have generally agreed that the virus probably comes from bat, closely related to a bat CoV named BCoV-RaTG13 taken from horseshoe bat (Rhinolophus affinis), with Malayan pangolin (Manis javanica) being a plausible intermediate host. However, due to the relatively low number of SARS-CoV-2-related strains available in public domain, the evolutionary history remains unclear. Methodology Nine hundred ninety-five coronavirus sequences from NCBI Genbank and GISAID were obtained and multiple sequence alignment was carried out to categorize SARS-CoV-2 related groups. Spike sequences were analyzed using similarity analysis and conservation analyses. Mutation analysis was used to identify variations within receptor-binding domain (RBD) in spike for SARS-CoV-2-related strains. Results We identified a family of SARS-CoV-2-related strains, including the closest relatives, bat CoV RaTG13 and pangolin CoV strains. Sequence similarity analysis and conservation analysis on spike sequence identified that N-terminal domain, RBD and S2 subunit display different degrees of conservation with several coronavirus strains. Mutation analysis on contact sites in SARS-CoV-2 RBD reveals that human-susceptibility probably emerges in pangolin. Conclusion and implication We conclude that the spike sequence of SARS-CoV-2 is the result of multiple recombination events during its transmission from bat to human, and we propose a framework of evolutionary history that resolve the relationship of BCoV-RaTG13 and pangolin coronaviruses with SARS-CoV-2. Lay Summary This study analyses whole-genome and spike sequences of coronavirus from NCBI using phylogenetic and conservation analyses to reconstruct the evolutionary history of severe acute respiratory syndrome (SARS)-CoV-2 and proposes an evolutionary history of spike in the progenitors of SARS-CoV-2 from bat to human through mammal hosts before they recombine into the current form.

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