Comparing atom-based with residue-based descriptors in predicting binding site similarity: do backbone atoms matter?

2016 ◽  
Vol 8 (15) ◽  
pp. 1871-1885 ◽  
Author(s):  
Noé Sturm ◽  
Didier Rognan ◽  
Ronald J Quinn ◽  
Esther Kellenberger
Keyword(s):  
Binding Site ◽  
Binding Site Similarity ◽  
Backbone Atoms

Supersites within superfolds. Binding site similarity in the absence of homology 1 1Edited by J. Thornton

1998 ◽  
Vol 282 (4) ◽  
pp. 903-918 ◽  
Author(s):  
Robert B. Russell ◽  
Peter D. Sasieni ◽  
Michael J.E. Sternberg
Keyword(s):  
Binding Site ◽  
Binding Site Similarity

scholarly journals The Poisson Index: a new probabilistic model for protein–ligand binding site similarity

2007 ◽  
Vol 23 (22) ◽  
pp. 3001-3008 ◽  
Author(s):  
J.R. Davies ◽  
R.M. Jackson ◽  
K.V. Mardia ◽  
C.C. Taylor
Keyword(s):  
Ligand Binding ◽  
Binding Site ◽  
Probabilistic Model ◽  
Ligand Binding Site ◽  
Binding Site Similarity

scholarly journals Binding of Protein Kinase Inhibitors to Synapsin I Inferred from Pair-Wise Binding Site Similarity Measurements

PLoS ONE ◽  
2010 ◽  
Vol 5 (8) ◽  
pp. e12214 ◽  
Author(s):  
Enrico De Franchi ◽  
Claire Schalon ◽  
Mirko Messa ◽  
Franco Onofri ◽  
Fabio Benfenati ◽  
...  
Keyword(s):  
Protein Kinase ◽  
Binding Site ◽  
Kinase Inhibitors ◽  
Protein Kinase Inhibitors ◽  
Synapsin I ◽  
Binding Site Similarity
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