Diversity and function of fungi in peatlands: A carbon cycling perspective

2006 ◽  
Vol 86 (Special Issue) ◽  
pp. 281-293 ◽  
Author(s):  
Markus N. Thormann
Keyword(s):  
Organic Matter ◽  
Carbon Cycling ◽  
Mycorrhizal Fungi ◽  
Extracellular Enzymes ◽  
Carbon Dynamics ◽  
Plant Production ◽  
Current State ◽  
Complex Polymers ◽  
And Function ◽  
Anamorphic Ascomycetes

Peatlands are a dominant landform in the northern hemisphere, accumulating carbon in the form of peat due to an imbalance between decomposition and plant production rates. Decomposer (saprobes) and mycorrhizal fungi significantly influence carbon dynamics by degrading organic matter via the synthesis of extracellular enzymes. As organic matter decomposes, litter quality variables figure most prominently in the succession of fungi. Hence, litters composed primarily of complex polymers decompose very slowly. Surprisingly, recalcitrant polymer degraders (mostly basidiomycetes) are rarely isolated from peat, which may explain the accumulation of complex polymers in peat profiles. While enzymatic profiles of mycorrhizal fungi and other root endophytes may be more limited compared with saprobes, many of these fungi can degrade polymers of varying complexity as well and hence may also be significant decomposers of organic matter. To date, anamorphic ascomycetes and zygomycetes are the most frequently isolated fungi from peatlands (63 and 10% of all taxa, respectively), and chytridiomycetes, teleomorphic ascomycetes, and basidiomycetes appear to be less common (11% of all taxa). The remaining 16% of taxa remain unidentified or are sterile taxa. How disturbances affect peatland microbial communities and their roles is virtually unknown. This aspect of peatland microbial ecology requires immediate attention. The objective of this paper is to review the current state of knowledge of the diversity of fungi and their roles in carbon cycling dynamics in peatlands. Key words: Peatlands, fungi, carbon dynamics, diversity, functions, saprobes, mycorrhizas

Modeling of soil carbon dynamics, with focus on microbial activity

2020 ◽  
Author(s):  
Elin Ristorp Aas ◽  
Terje Koren Berntsen ◽  
Alexander Eiler ◽  
Helge Hellevang
Keyword(s):  
Organic Matter ◽  
Soil Carbon ◽  
Mycorrhizal Fungi ◽  
Carbon Dynamics ◽  
Carbon Pools ◽  
Soil Processes ◽  
Soil Carbon Dynamics ◽  
Decomposition Processes ◽  
A Site

<p>The representation of soil carbon dynamics is a major source of uncertainty in Earth System Models (ESMs). The terrestrial carbon pool is more than twice the size of the atmospheric pool. Therefore, the role of soil carbon as a source or a sink of atmospheric carbon, and in feedback loops is important to quantify in a changing climate. Decomposition processes of organic matter in soil have often been represented by first order decay equations, which make comparison and validation against observations difficult. Therefore, quantification of the uncertainties  and validation of improved parameterizations are problematic. An emerging approach to tackle these challenges is to represent microbial soil processes explicitly in the models. Following this approach, we have built a process based module that represent the carbon fluxes during soil decomposition, from aboveground litter to soil organic matter (SOM). The role of saprotrophs and mycorrhizal fungi is explicitly represented with separate carbon pools with associated fluxes. On a site level, we compare initial results from the stand alone module with both existing models and observations of carbon pools and fluxes. The observations are from the Norwegian Dovre Mountains, with data from three different alpine communities. These geographic areas are important, because they are subject to changes due to shrubification. In addition, these ecosystems can store large amounts of carbon. By modeling these sites, we gain more insight in the most important processes in soil decomposition, and how different microbial communities affect the carbon dynamics. We will further refine the module by expanding our study with more sites. The long-term objective is to develop an improved module that can be used to represent soil processes in ESMs, and thereby reduce the uncertainty connected to the exchange of carbon between land and atmosphere.</p>

scholarly journals Carbon Polygons and Carbon Offsets: Current State, Key Challenges and Pedological Aspects

Agronomy ◽  
2021 ◽  
Vol 11 (10) ◽  
pp. 2013
Author(s):  
Evgeny Abakumov ◽  
Vyacheslav Polyakov
Keyword(s):  
Organic Matter ◽  
Carbon Balance ◽  
Soil Cover ◽  
Carbon Stocks ◽  
Carbon Offsets ◽  
Current State ◽  
And Function ◽  
Global Carbon ◽  
Regions Of Russia ◽  
Carbon Economy

Russia holds the largest store of carbon in soils, forests and permafrost grounds. Carbon, stored in a stabilized form, plays an important role in the balance of the global biogeochemical cycle and greenhouse gases. Thus, recalcitrance of soil organic matter to mineralization results in a decrease in current emissions of carbon dioxide into the atmosphere. At the same time, stabilization of organic matter in the form of humus due to organo–mineral interactions leads to the sequestration of carbon from the atmosphere into soils and biosediments. Thus, global carbon balance is essentially determined by soil cover state and stability. Currently, Russia is faced with a set of problems regarding carbon offsets and the carbon economy. One of the methods used to evaluate carbon stocks in ecosystems and verify offsets rates is carbon polygons, which are currently being organized, or are under organization, in various regions of Russia. This discussion addresses the current issues surrounding the methods and methodology of carbon polygons and their pedological organization and function.

The Oxford Handbook of the Auditory Brainstem

2018 ◽  
Keyword(s):  
Current Knowledge ◽  
Auditory Pathway ◽  
Auditory Brainstem ◽  
Auditory Midbrain ◽  
Current State ◽  
Neuronal Mechanisms ◽  
Maladaptive Plasticity ◽  
And Function ◽  
Auditory Field

The Oxford Handbook of the Auditory Brainstem provides an in-depth reference to the organization and function of ascending and descending auditory pathways in the mammalian brainstem. Individual chapters are organized along the auditory pathway, beginning with the cochlea and ending with the auditory midbrain. Each chapter provides an introduction to the respective area and summarizes our current knowledge before discussing the disputes and challenges that the field currently faces.The handbook emphasizes the numerous forms of plasticity that are increasingly observed in many areas of the auditory brainstem. Several chapters focus on neuronal modulation of function and plasticity on the synaptic, neuronal, and circuit level, especially during development, aging, and following peripheral hearing loss. In addition, the book addresses the role of trauma-induced maladaptive plasticity with respect to its contribution in generating central hearing dysfunction, such as hyperacusis and tinnitus.The book is intended for students and postdoctoral fellows starting in the auditory field and for researchers of related fields who wish to get an authoritative and up-to-date summary of the current state of auditory brainstem research. For clinical practitioners in audiology, otolaryngology, and neurology, the book is a valuable resource of information about the neuronal mechanisms that are currently discussed as major candidates for the generation of central hearing dysfunction.

Invasive plant-derived dissolved organic matter alters microbial communities and carbon cycling in soils

2021 ◽  
pp. 108191
Author(s):  
Morgan Luce McLeod ◽  
Lorinda Bullington ◽  
Cory C. Cleveland ◽  
Johannes Rousk ◽  
Ylva Lekberg
Keyword(s):  
Organic Matter ◽  
Dissolved Organic Matter ◽  
Microbial Communities ◽  
Carbon Cycling ◽  
Invasive Plant

scholarly journals Expression and Function of Organic Anion Transporting Polypeptides in the Human Brain: Physiological and Pharmacological Implications

Pharmaceutics ◽  
2021 ◽  
Vol 13 (6) ◽  
pp. 834
Author(s):  
Anima M. Schäfer ◽  
Henriette E. Meyer zu Schwabedissen ◽  
Markus Grube
Keyword(s):  
Organic Anion ◽  
Physiological Role ◽  
Point Of View ◽  
Efflux Transporters ◽  
Organic Anion Transporting Polypeptides ◽  
Current State ◽  
P Glycoprotein ◽  
The Central Nervous System ◽  
And Function ◽  
Uptake Transporters

The central nervous system (CNS) is an important pharmacological target, but it is very effectively protected by the blood–brain barrier (BBB), thereby impairing the efficacy of many potential active compounds as they are unable to cross this barrier. Among others, membranous efflux transporters like P-Glycoprotein are involved in the integrity of this barrier. In addition to these, however, uptake transporters have also been found to selectively uptake certain compounds into the CNS. These transporters are localized in the BBB as well as in neurons or in the choroid plexus. Among them, from a pharmacological point of view, representatives of the organic anion transporting polypeptides (OATPs) are of particular interest, as they mediate the cellular entry of a variety of different pharmaceutical compounds. Thus, OATPs in the BBB potentially offer the possibility of CNS targeting approaches. For these purposes, a profound understanding of the expression and localization of these transporters is crucial. This review therefore summarizes the current state of knowledge of the expression and localization of OATPs in the CNS, gives an overview of their possible physiological role, and outlines their possible pharmacological relevance using selected examples.

scholarly journals Cell-free extracellular enzymatic activity is linked to seasonal temperature changes: a case study in the Baltic Sea

2016 ◽  
Vol 13 (9) ◽  
pp. 2815-2821 ◽  
Author(s):  
Federico Baltar ◽  
Catherine Legrand ◽  
Jarone Pinhassi
Keyword(s):  
Organic Matter ◽  
Baltic Sea ◽  
Extracellular Enzymes ◽  
Seasonal Pattern ◽  
Critical Factor ◽  
Hydrolytic Activity ◽  
Seasonal Temperature ◽  
The Baltic Sea ◽  
The Baltic ◽  
Hydrolysis Of

Abstract. Extracellular enzymatic activities (EEAs) are a crucial step in the degradation of organic matter. Dissolved (cell-free) extracellular enzymes in seawater can make up a significant contribution of the bulk EEA. However, the factors controlling the proportion of dissolved EEA in the marine environment remain unknown. Here we studied the seasonal changes in the proportion of dissolved relative to total EEA (of alkaline phosphatase (APase), β-glucosidase (BGase), and leucine aminopeptidase (LAPase)), in the Baltic Sea for 18 months. The proportion of dissolved EEA ranged between 37 and 100, 0 and 100, and 34 and 100 % for APase, BGase, and LAPase, respectively. A consistent seasonal pattern in the proportion of dissolved EEA was found among all the studied enzymes, with values up to 100 % during winter and  <  40 % during summer. A significant negative relation was found between the proportion of dissolved EEA and temperature, indicating that temperature might be a critical factor controlling the proportion of dissolved relative to total EEA in marine environments. Our results suggest a strong decoupling of hydrolysis rates from microbial dynamics in cold waters. This implies that under cold conditions, cell-free enzymes can contribute to substrate availability at large distances from the producing cell, increasing the dissociation between the hydrolysis of organic compounds and the actual microbes producing the enzymes. This might also suggest a potential effect of global warming on the hydrolysis of organic matter via a reduction of the contribution of cell-free enzymes to the bulk hydrolytic activity.

scholarly journals Predicting decadal trends and transient responses of radiocarbon storage and fluxes in a temperate forest soil

2012 ◽  
Vol 9 (8) ◽  
pp. 3013-3028 ◽  
Author(s):  
C. A. Sierra ◽  
S. E. Trumbore ◽  
E. A. Davidson ◽  
S. D. Frey ◽  
K. E. Savage ◽  
...  
Keyword(s):  
Organic Matter ◽  
Soil Organic Matter ◽  
Soil Carbon ◽  
Empirical Model ◽  
Temperate Forest ◽  
Global Environmental Change ◽  
Carbon Dynamics ◽  
Co2 Efflux ◽  
Soil C ◽  
Soil Carbon Dynamics

Abstract. Representing the response of soil carbon dynamics to global environmental change requires the incorporation of multiple tools in the development of predictive models. An important tool to construct and test models is the incorporation of bomb radiocarbon in soil organic matter during the past decades. In this manuscript, we combined radiocarbon data and a previously developed empirical model to explore decade-scale soil carbon dynamics in a temperate forest ecosystem at the Harvard Forest, Massachusetts, USA. We evaluated the contribution of different soil C fractions to both total soil CO2 efflux and microbially respired C. We tested the performance of the model based on measurable soil organic matter fractions against a decade of radiocarbon measurements. The model was then challenged with radiocarbon measurements from a warming and N addition experiment to test multiple hypotheses about the different response of soil C fractions to the experimental manipulations. Our results showed that the empirical model satisfactorily predicts the trends of radiocarbon in litter, density fractions, and respired CO2 observed over a decade in the soils not subjected to manipulation. However, the model, modified with prescribed relationships for temperature and decomposition rates, predicted most but not all the observations from the field experiment where soil temperatures and nitrogen levels were increased, suggesting that a larger degree of complexity and mechanistic relations need to be added to the model to predict short-term responses and transient dynamics.

scholarly journals Temperature and UV light affect the activity of marine cell-free enzymes

2017 ◽  
Vol 14 (17) ◽  
pp. 3971-3977 ◽  
Author(s):  
Blair Thomson ◽  
Christopher David Hepburn ◽  
Miles Lamare ◽  
Federico Baltar
Keyword(s):  
Organic Matter ◽  
Extracellular Enzymes ◽  
Elevated Temperatures ◽  
Uv Light ◽  
Control Mechanisms ◽  
Potential Control ◽  
Control Factors ◽  
Rate Limiting Step ◽  
Ocean Environment ◽  
First Time

Abstract. Microbial extracellular enzymatic activity (EEA) is the rate-limiting step in the degradation of organic matter in the oceans. These extracellular enzymes exist in two forms: cell-bound, which are attached to the microbial cell wall, and cell-free, which are completely free of the cell. Contrary to previous understanding, cell-free extracellular enzymes make up a substantial proportion of the total marine EEA. Little is known about these abundant cell-free enzymes, including what factors control their activity once they are away from their sites (cells). Experiments were run to assess how cell-free enzymes (excluding microbes) respond to ultraviolet radiation (UVR) and temperature manipulations, previously suggested as potential control factors for these enzymes. The experiments were done with New Zealand coastal waters and the enzymes studied were alkaline phosphatase (APase), β-glucosidase, (BGase), and leucine aminopeptidase (LAPase). Environmentally relevant UVR (i.e. in situ UVR levels measured at our site) reduced cell-free enzyme activities by up to 87 % when compared to controls, likely a consequence of photodegradation. This effect of UVR on cell-free enzymes differed depending on the UVR fraction. Ambient levels of UV radiation were shown to reduce the activity of cell-free enzymes for the first time. Elevated temperatures (15 °C) increased the activity of cell-free enzymes by up to 53 % when compared to controls (10 °C), likely by enhancing the catalytic activity of the enzymes. Our results suggest the importance of both UVR and temperature as control mechanisms for cell-free enzymes. Given the projected warming ocean environment and the variable UVR light regime, it is possible that there could be major changes in the cell-free EEA and in the enzymes contribution to organic matter remineralization in the future.

scholarly journals Photochemical alteration of dissolved organic matter and the subsequent effects on bacterial carbon cycling and diversity

2016 ◽  
Vol 92 (5) ◽  
pp. fiw048 ◽  
Author(s):  
Christian Lønborg ◽  
Mar Nieto-Cid ◽  
Victor Hernando-Morales ◽  
Marta Hernández-Ruiz ◽  
Eva Teira ◽  
...  
Keyword(s):  
Organic Matter ◽  
Dissolved Organic Matter ◽  
Carbon Cycling
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