Soil microbial biomass and diversity after herbicide application

2004 ◽  
Vol 84 (2) ◽  
pp. 677-685 ◽  
Author(s):  
N. Z. Lupwayi ◽  
K. N. Harker ◽  
G. W. Clayton ◽  
T. K. Turkington ◽  
W. A. Rice ◽  
...  
Keyword(s):  
Community Structure ◽  
Microbial Biomass ◽  
Microbial Diversity ◽  
Bacterial Diversity ◽  
Field Experiments ◽  
Greenhouse Experiment ◽  
Glufosinate Ammonium ◽  
Chernozemic Soil ◽  
Soil Microbial ◽  
Microbial C

Greenhouse and field experiments were conducted to investigate the effects of herbicides on soil microbial C (microbial biomass), bacterial diversity and community structure. In the first greenhouse experiment, 12 herbicides were applied at recommended rates to a Gray Luvisolic soil contained in trays. Soil samples were collected 0, 1, 2, 3 and 4 wk after treatment and analysed for microbial C and bacterial diversity. The second greenhouse experiment was similar to the first, but only 6 of the 12 herbicides were applied to a Gray Luvisolic and Black Chernozemic soil. The same six herbicides were applied to the Gray Luvisolic soil at a field site near Fort Vermilion, Alberta, and to the Black Chernozemic soil at Lacombe, Alberta, in 2000. In the first greenhouse experiment, metribuzin, imazamox/imazethapyr, triasulfuron and metsulfuron methyl reduced microbial C compared with glufosinate ammonium and sethoxydim. In the second greenhouse experiment, microbial diversity as determined by Shannon index was lower after application of metribuzin, imazamox/imazethapyr and glufosinate ammonium than after application of glyphosate, but none of the herbicides altered microbial diversity relative to the control treatment. In the field experiments, herbicides had no effect on microbial C or diversity. In all experiments, examination of microbial community structure revealed herbicide-induced shifts in microbial composition even when diversity indices among treatments were not different. It was concluded that herbicides applied once at recommended rates did not have significant or consistent effects on microbial C or diversity. Key words: Environmental sustainability, substrate utilization, biological soil quality, community-level physiological profiles (CLPP)

scholarly journals Biochar affects the structure rather than the total biomass of microbial communities in temperate soils

2013 ◽  
Vol 22 (4) ◽  
pp. 404-423 ◽  
Author(s):  
Elena Anders ◽  
Andrea Watzinger ◽  
Franziska Rempt ◽  
Barbara Kitzler ◽  
Bernhard Wimmer ◽  
...  
Keyword(s):  
Community Structure ◽  
Microbial Biomass ◽  
Microbial Communities ◽  
Field Experiments ◽  
Soil Microbial Communities ◽  
Greenhouse Experiment ◽  
Soil Conditions ◽  
Total Biomass ◽  
Soil Microbial ◽  
Temperate Soils

Biochar application is a promising strategy for sequestering carbon in agricultural soils and for improving degraded soils. Nonetheless, contradictory and unsettled issues remain. This study investigates whether biochar influences the soil microbial biomass and community structure using phospholipid fatty acid (PLFA) analysis. We monitored the effects of four different types of biochar on the soil microbial communities in three temperate soils of Austria over several months. A greenhouse experiment and two field experiments were conducted. The biochar application did not significantly increase or decrease the microbial biomass. Only the addition of vineyard pruning biochar pyrolysed at 400°C caused microbial biomass to increase in the greenhouse experiment. The biochar treatments however caused shifts in microbial communities (visualized by principal component analysis). We concluded that the shifts in the microbial community structure are an indirect rather than a direct effect and depend on soil conditions and nutrient status.

scholarly journals Soil microbial inoculation during flood events shapes headwater stream microbial communities and diversity

2021 ◽  
Author(s):  
Florian Caillon ◽  
Katharina Besemer ◽  
Peter Peduzzi ◽  
Jakob Schelker
Keyword(s):  
Microbial Diversity ◽  
Bacterial Diversity ◽  
Soil Water ◽  
Headwater Streams ◽  
High Flow ◽  
Low Flow ◽  
Flood Events ◽  
Flow Conditions ◽  
Soil Microbial ◽  
Microbial Inoculation

AbstractFlood events are now recognized as potentially important occasions for the transfer of soil microbes to stream ecosystems. Yet, little is known about these “dynamic pulses of microbial life” for stream bacterial community composition (BCC) and diversity. In this study, we explored the potential alteration of stream BCC by soil inoculation during high flow events in six pre-alpine first order streams and the larger Oberer Seebach. During 1 year, we compared variations of BCC in soil water, stream water and in benthic biofilms at different flow conditions (low to intermediate flows versus high flow). Bacterial diversity was lowest in biofilms, followed by soils and highest in headwater streams and the Oberer Seebach. In headwater streams, bacterial diversity was significantly higher during high flow, as compared to low flow (Shannon diversity: 7.6 versus 7.9 at low versus high flow, respectively, p < 0.001). Approximately 70% of the bacterial operational taxonomic units (OTUs) from streams and stream biofilms were the same as in soil water, while in the latter one third of the OTUs were specific to high flow conditions. These soil high-flow OTUs were also found in streams and biofilms at other times of the year. These results demonstrate the relevance of floods in generating short and reoccurring inoculation events for flowing waters. Moreover, they show that soil microbial inoculation during high flow enhances microbial diversity and shapes fluvial BCC even during low flow. Hence, soil microbial inoculation during floods could act as a previously overlooked driver of microbial diversity in headwater streams.

Soil microbial biomass and diversity respond to tillage and sulphur fertilizers

2001 ◽  
Vol 81 (5) ◽  
pp. 577-589 ◽  
Author(s):  
N. Z. Lupwayi ◽  
M. A. Monreal ◽  
G. W. Clayton ◽  
C. A. Grant ◽  
A. M. Johnston ◽  
...  
Keyword(s):  
Microbial Biomass ◽  
Microbial Diversity ◽  
Soil Microorganisms ◽  
Soil Microbial Biomass ◽  
Conventional Tillage ◽  
Bulk Soil ◽  
Zero Tillage ◽  
Negative Effects ◽  
Tillage Systems ◽  
Soil Microbial

There is little information on the effects of S management strategies on soil microorganisms under zero tillage systems o n the North American Prairies. Experiments were conducted to examine the effects of tillage and source and placement of S on soil microbial biomass (substrate induced respiration) and functional diversity (substrate utilization patterns) in a canola-wheat rotation under conventional and zero tillage systems at three sites in Gray Luvisolic and Black Chernozemic soils. Conventional tillage significantly reduced microbial biomass and diversity on an acidic and C-poor Luvisolic soil, but it had mostly no significant effects on the near-neutral, C-rich Luvisolic and Chernozemic soils, which underlines the importance of soil C in maintaining a healthy soil. Sulphur had no significant effects on soil microbial biomass, and its effects on microbial diversity were more frequent on the near-neutral Luvisol, which was more S-deficient, than on the acidic Luvisol or the Chernozem. Significant S effects on microbial diversity were observed both in the bulk soil (negative effects, compared with the control) and rhizosphere (positive effects) of the acidic Luvisol, but all significant effects (positive) were observed in root rhizospheres in the other soils. Sulphur by tillage interactions on acidic Luvisolic soil indicated that the negative effects of S in bulk soil occurred mostly under zero tillage, presumably because the fertilizer is concentrated in a smaller volume of soil than under conventional tillage. Sulphate S effects, either negative or positive, on microbial diversity were usually greater than elemental S effects. Therefore, S application can have direct, deleterious effects on soil microorganisms or indirect, beneficial effects through crop growth, the latter presumably due to increased root exudation in the rhizosphere of healthy crops. Key Words: Biolog, conservation tillage, microbial biodiversity, rhizosphere, soil biological quality, S fertilizer type and placement

scholarly journals Defining a realistic control for the chloroform fumigation-incubation method using microscopic counting and 14C-substrates

1996 ◽  
Vol 76 (4) ◽  
pp. 459-467 ◽  
Author(s):  
William R. Horwath ◽  
Eldor A. Paul ◽  
David Harris ◽  
Jeannette Norton ◽  
Leslie Jagger ◽  
...  
Keyword(s):  
Microbial Biomass ◽  
Soil Microbial Biomass ◽  
Microbial Biomass Carbon ◽  
Soil Depth ◽  
Temporal Trends ◽  
Biomass Carbon ◽  
Soil Microbial ◽  
Microbial C ◽  
Parameter Values ◽  
Chloroform Fumigation

Chloroform fumigation-incubation (CFI) has made possible the extensive characterization of soil microbial biomass carbon (C) (MBC). Defining the non-microbial C mineralized in soils following fumigation remains the major limitation of CFI. The mineralization of non-microbial C during CFI was examined by adding 14C-maize to soil before incubation. The decomposition of the 14C-maize during a 10-d incubation after fumigation was 22.5% that in non-fumigated control soils. Re-inoculation of the fumigated soil raised 14C-maize decomposition to 77% that of the unfumigated control. A method was developed which varies the proportion of mineralized C from the unfumigated soil (UFC) that is subtracted in calculating CFI biomasss C. The proportion subtracted (P) varies according to a linear function of the ratio of C mineralized in the fumigated (FC) and unfumigated samples (FC/UFC) with two parameters K1 and K2 (P = K1FC/UFC) + K2). These parameters were estimated by regression of CFI biomass C, calculated according to the equation MBC = (FC − PUFC)/0.41, against that derived by direct microscopy in a series of California soils. Parameter values which gave the best estimate of microscopic biomass from the fumigation data were K1 = 0.29 and K2 = 0.23 (R2 = 0.87). Substituting these parameter values, the equation can be simplified to MBC = 1.73FC − 0.56UFC. The equation was applied to other CFI data to determine its effect on the measurement of MBC. The use of this approach corrected data that were previously difficult to interpret and helped to reveal temporal trends and changes in MBC associated with soil depth. Key words: Chloroform fumigation-incubation, soil microbial biomass, microscopically estimated biomass, carbon, control, 14C

scholarly journals A meta-analysis of the effect of organic and mineral fertilizers on soil microbial diversity

2020 ◽  
Author(s):  
Daniel P. Bebber ◽  
Victoria R. Richards
Keyword(s):  
Microbial Biomass ◽  
Microbial Diversity ◽  
Meta Analysis ◽  
Taxonomic Diversity ◽  
Mineral Fertilizers ◽  
Soil Microbial Diversity ◽  
Soil Microbial ◽  
Meta Analyses ◽  
Fertilizer Regimes ◽  
Diversity Metrics

ABSTRACTThe Green Revolution of agriculture was in part driven by application of synthetic mineral fertilizers, largely supplanting organic manure as a source of the major nutrients nitrogen, phosphorous and potassium (NPK). Though enhancing crop production and global food security, fertilizers have contributed to soil acidification, eutrophication of water bodies, and greenhouse gas emissions. Organic agriculture, employing manures or composts, has been proposed as a way of mitigating these undesirable effects. Of particular interest is the effect of fertilizer regime on soil microbes, which are key to nutrient cycling, plant health and soil structure. Meta-analyses of experimental studies indicate that mineral fertilizer increases soil microbial biomass over unfertilized controls, and that organic fertilizers increase microbial biomass and activity over mineral fertilizers. However, the effect of fertilizers on soil microbial diversity remains poorly understood. Since biological diversity is an important determinant of ecosystem function and a fundamental metric in community ecology, the effects of fertilizer regimes on soil microbial diversity are of theoretical and applied interest. Here, we conduct a meta-analysis of 31 studies reporting microbial diversity metrics in mineral fertilized (NPK), organically fertilized (ORG) and unfertilized control (CON) soils. Of these studies, 26 reported taxonomic diversity derived from sequencing, gradient gel electrophoresis, RFLP, or dilution plate assay. Functional diversity, derived from Biolog Ecoplate™ measures of carbon substrate metabolism, was reported in 8 studies, with 3 studies reporting both diversity metrics. We found that functional diversity was on average 2.6 % greater in NPK compared with CON, 6.8 % greater in ORG vs CON and 3.6 % greater in ORG vs NPK. Prokaryote taxonomic diversity was not significantly different between NPK and CON, 4.2 % greater in ORG vs CON and 4.6 % greater in ORG vs. NPK. Fungal taxonomic diversity was not significantly different between NPK or ORG vs CON, but 5.4 % lower between ORG and NPK. There was very high residual heterogeneity in all meta-analyses of soil diversity, suggesting that a large amount of further research with detailed analysis of soil properties is required to fully understand the influence of fertilizer regimes on microbial diversity and ecosystem function.

scholarly journals Agricultural practice negatively affects soil microbial diversity and nitrogen functional genes comparing to adjacent native forest soils

2021 ◽  
Author(s):  
Tiehang Wu ◽  
Michael Sabula ◽  
Holli Milner ◽  
Gary Strickland ◽  
Gan Liu
Keyword(s):  
Community Structure ◽  
Bacterial Diversity ◽  
Forest Soils ◽  
Agricultural Practices ◽  
Functional Genes ◽  
Agricultural Practice ◽  
Soil Bacterial Diversity ◽  
Soil Microbial Diversity ◽  
Soil Microbial ◽  
Soil Bacterial

Soil microbial diversity and community are determined by anthropogenic activities and environmental conditions, which greatly affect the functioning of ecosystem. We investigated the soil bacterial diversity, communities, and nitrogen (N) functional genes with different disturbance intensity levels from crop, transition, to forest soils at three locations in the coastal region of Georgia, USA. Illumina high-throughput DNA sequencing based on bacterial 16S rRNA genes were performed for bacterial diversity and community analyses. Nitrifying (AOB amoA) and denitrifying (nirK) functional genes were further detected using quantitative PCR (qPCR) and Denaturing Gradient Gel Electrophoresis (DGGE). Soil bacterial community structure determined by Illumina sequences were significantly different between crop and forest soils (p < 0.01), as well as between crop and transition soils (p = 0.01). However, there is no difference between transition and forest soils. Compared to less disturbed forest, agricultural practice significantly decreased soil bacterial richness and Shannon diversity. Soil pH and nitrate contents together contributed highest for the observed different bacterial communities (Correlations = 0.381). Two OTUs (OTU5, OTU8) belonging to Acidobacteriales species decreased in crop soils, however, agricultural practices significantly increased an OTU (OTU4) of Nitrobacteraceae. The relative abundance of AOB amoA gene was significantly higher in crop soils than in forest and transition soils. Distinct grouping of soil denitrifying bacterial nirK communities was observed and agricultural practices significantly decreased the diversity of nirK gene compared to forest soils. Anthropogenic effects through agricultural practices negatively affecting the soil bacterial diversity, community structure, and N functional genes.

scholarly journals Soil microbial biomass, activity and community composition along altitudinal gradients in the High Arctic (Billefjorden, Svalbard)

2018 ◽  
Vol 15 (6) ◽  
pp. 1879-1894 ◽  
Author(s):  
Petr Kotas ◽  
Hana Šantrůčková ◽  
Josef Elster ◽  
Eva Kaštovská
Keyword(s):  
Community Structure ◽  
Microbial Biomass ◽  
High Arctic ◽  
The Arctic ◽  
Soil Parameters ◽  
Organic Carbon Content ◽  
Soil Microbial ◽  
Environmental Controls ◽  
Arctic Soils ◽  
Tundra Ecosystem

Abstract. The unique and fragile High Arctic ecosystems are vulnerable to global climate warming. The elucidation of factors driving microbial distribution and activity in arctic soils is essential for a comprehensive understanding of ecosystem functioning and its response to environmental change. The goals of this study were to investigate microbial biomass and activity, microbial community structure (MCS), and their environmental controls in soils along three elevational transects in the coastal mountains of Billefjorden, central Svalbard. Soils from four different altitudes (25, 275, 525 and 765 m above sea level) were analyzed for a suite of characteristics including temperature regimes, organic matter content, base cation availability, moisture, pH, potential respiration, and microbial biomass and community structure using phospholipid fatty acids (PLFAs). We observed significant spatial heterogeneity of edaphic properties among transects, resulting in transect-specific effects of altitude on most soil parameters. We did not observe any clear elevation pattern in microbial biomass, and microbial activity revealed contrasting elevational patterns between transects. We found relatively large horizontal variability in MCS (i.e., between sites of corresponding elevation in different transects), mainly due to differences in the composition of bacterial PLFAs, but also a systematic altitudinal shift in MCS related to different habitat preferences of fungi and bacteria, which resulted in high fungi-to-bacteria ratios at the most elevated sites. The biological soil crusts on these most elevated, unvegetated sites can host microbial assemblages of a size and activity comparable to those of the arctic tundra ecosystem. The key environmental factors determining horizontal and vertical changes in soil microbial properties were soil pH, organic carbon content, soil moisture and Mg2+ availability.

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