EFFECTS OF TEMPERATURE ON CHANGES IN THE NITROGENOUS CONSTITUENTS OF MIXED FOREST LITTERS DURING DECOMPOSITION AFTER INOCULATION WITH VARIOUS MICROBIAL CULTURES

1974 ◽  
Vol 54 (4) ◽  
pp. 387-394 ◽  
Author(s):  
F. J. SOWDEN ◽  
K. C. IVARSON
Keyword(s):  
Amino Acid ◽  
Mixed Forest ◽  
Soil Extract ◽  
Total N ◽  
Intermediate Period ◽  
Microbial Cultures ◽  
Heated Milk ◽  
Treated Leaf ◽  
Effects Of Temperature ◽  
The Individual

A study was made of the effects of temperature and different microorganisms, or mixtures of microorganisms, on the changes in the nitrogenous constituents of mixed forest litters (mixed pine, oak, maple) during decomposition periods of up to 4 yr at 1, 4, 10, and 27 C. The percentage of total-N in the decomposing materials increased with time, the increase being related to loss in weight of sample. The percentage of amino-N/total-N was higher with the soil-extract-treated leaf mixture than with the fungi-inoculated material; it increased to a maximum at some intermediate period, then decreased, and was highest with the 930 day 27 C material. Most of the individual amino acids increased in amount up to 930 days; then decreased, the amounts being, in general, higher with higher temperatures. Much of this increase was related to loss in weight of sample, but there appeared to be some net synthesis of amino acid. Lysine and, to a lesser extent, histidine were exceptions to this generalization. The amounts of hexosamines increased with decomposition: with the soil-extract-treated materials the increase of galactosamine was relatively greater than that of glucosamine, but little or no galactosamine was found in any of the fungi-inoculated materials. The amino acid ratios, i.e., the proportion of one relative to another, did not change in any consistent fashion, except for lysine. With the fungi-inoculated material, autoclaving reduced the amount of lysine to less than one-half and a ninhydrin-reacting material appeared before arginine on the amino acid chromatograms; its amount was not changed during decomposition. It may be similar to lysine derivatives found in acid hydrolyzates of heated milk.

ORGANIC NITROGEN DISTRIBUTION IN SELECTED PEATS AND PEAT FRACTIONS

1978 ◽  
Vol 58 (2) ◽  
pp. 237-249 ◽  
Author(s):  
F. J. SOWDEN ◽  
H. MORITA ◽  
M. LEVESQUE
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
Amino Acid Composition ◽  
Acid Composition ◽  
Acid Amide ◽  
Amino Sugar ◽  
The Other ◽  
Total N ◽  
Mesh Material ◽  
The Individual

The nitrogenous products formed by 6 N HCl hydrolysis of a variety of peats including a cultivated mesic profile, a virgin humic profile, a sedge, a woody and a sphagnum fibric peat were studied. Peat fractions separated according to particle size, woody and herbaceous materials isolated from a peat sample, and Typha and Carex plants growing on peat soils were also analyzed. Of the two profiles examined, the cultivated mesic peat showed significant quantitative changes in the content of individual amino acids throughout the profile. Also the amino sugar and amino acid N increased to a maximum, then decreased. On the other hand, the virgin humic peat profile exhibited random variations in the content of the individual amino acids and in the amount of amino acid N. Of the other peats examined, the fibric sphagnum had the highest percentage of amino acid N. Among the separates, the 100- to 200-mesh material had the highest proportion of amino acid N. The amino acid composition of the plant remains from the peat was similar to that of the peat from which it was isolated. The amino acid composition of the Typha and Carex plants was different from that of peat in that 75% of their total N content could be accounted for on the basis of amino acid, amide and amino sugar N. The amounts of hydroxyproline and the amino sugars in peats vary more than that of the amino compounds. In contrast to inorganic soils, which tend to have a similar amino acid composition, these limited data suggest that the amino acid and amino sugar contents of peats may be characteristic of individual bogs.

scholarly journals Evaluation of the fillet quality of wild-caught white sea bream (Diplodus sargus L.) and brown meagre (Sciaena umbra L.) captured from the Aegean Sea

2019 ◽  
Vol 20 (2) ◽  
Author(s):  
EMMANOUIL KOUROUPAKIS ◽  
KRITON GRIGORAKIS ◽  
SOFIA VARDALI ◽  
VASSILIKI ILIA ◽  
IOANNIS BATJAKAS ◽  
...  
Keyword(s):  
Amino Acid ◽  
White Sea ◽  
Aegean Sea ◽  
Essential Amino Acids ◽  
Sea Bream ◽  
Human Consumption ◽  
Total N ◽  
High Quality Protein ◽  
Diplodus Sargus ◽  
The Individual

White sea bream (Diplodus sargus) and brown meagre (Sciaena umbra) were caught from the wild in Aegean Sea (Greece), and studied for their proximate, fatty acid and amino acid composition to evaluate their nutritional value for human consumption and their potential as candidate fish species for Mediterranean aquaculture diversification. Both species exhibited very low muscle fat, ranging at 1%. White sea bream was found to have higher muscle eicosapentaenoic (EPA) and docohexaenoic (DHA) contents and total n-3 fatty acids than brown meagre. A superiority of white sea bream in aspects of thrombogenicity was indicated, showing higher atherogenic (0.679) and thrombogenic indices (0.377) comparing to the respective values for brown meagre (0.610 and 0.579). The two-studied species exhibited high-quality protein as food source, with white sea bream showing a higher essential to non-essential amino acid (EAA/NEAA) rate, 0.764 vs 0.704, respectively. The individual to total essential amino acids rates of lysine and leucine were the highest ones for both studied species, while no significant differences were observed among them.

Purification and Characterization of Lupus Anticoagulant Like Protein from Agkistrodon Halys Brevicaudus Venom

1996 ◽  
Vol 76 (06) ◽  
pp. 0993-0997
Author(s):  
Zhao-Yan Li ◽  
Xiao-Wei Wu ◽  
Tie-Fu Yu ◽  
Eric C-Y Lian
Keyword(s):  
Amino Acid ◽  
Lupus Anticoagulant ◽  
Inhibitory Effect ◽  
Clotting Factor ◽  
Acid Oxidase ◽  
Crude Venom ◽  
Amino Acid Oxidase ◽  
Sds Page ◽  
The Individual ◽  
Reducing Condition

SummaryBy means of CM-Sephadex C-25, DEAE-Sephadex A-50, Sephadex G-200, and Sephadex G-75 chromatographies, a lupus anticoagulant like protein (LALP) from Agkistrodon halys brevicaudus was purified. On SDS-PAGE, the purified LALP had a molecular weight of 25,500 daltons under non-reducing condition and 15,000 daltons under reducing condition. The isoelectric point was pH 5.6. Its N terminal amino acid sequencing revealed a mixture of 2 sequences: DCP(P/S)(D/G)WSSYEGH(C/R)Q(Q/K). It was devoid of phospho-lipaseA, fibrino(geno)lytic, 5′-nucleotidase, L-amino acid oxidase, phosphomonoesterase, phosphodiesterase and thrombin-like activities, which were found in crude venom. In the presence of LALP, PT, aPTT, and dRVVT of human plasma were markedly prolonged and its effects were concentration-dependent but time-independent. The inhibitory effect of LALP on the plasma clotting time was enhanced by decreasing phospholipid concentration in TTI test. The individual clotting factor activity was not affected by LALP when higher dilutions of LALP-plasma mixture were used for assay. Russell’s viper venom time was shortened when high phospholipid confirmatory reagent was used. Therefore, the protein has lupus anticoagulant property.

scholarly journals Prospective mapping of viral mutations that escape antibodies used to treat COVID-19

Science ◽  
2021 ◽  
Vol 371 (6531) ◽  
pp. 850-854 ◽  
Author(s):  
Tyler N. Starr ◽  
Allison J. Greaney ◽  
Amin Addetia ◽  
William W. Hannon ◽  
Manish C. Choudhary ◽  
...  
Keyword(s):  
Amino Acid ◽  
Infected Patient ◽  
Viral Escape ◽  
Single Amino Acid ◽  
Receptor Binding Domain ◽  
Amino Acid Mutation ◽  
The Individual ◽  
Viral Surveillance ◽  
Single Amino Acid Mutation

Antibodies are a potential therapy for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), but the risk of the virus evolving to escape them remains unclear. Here we map how all mutations to the receptor binding domain (RBD) of SARS-CoV-2 affect binding by the antibodies in the REGN-COV2 cocktail and the antibody LY-CoV016. These complete maps uncover a single amino acid mutation that fully escapes the REGN-COV2 cocktail, which consists of two antibodies, REGN10933 and REGN10987, targeting distinct structural epitopes. The maps also identify viral mutations that are selected in a persistently infected patient treated with REGN-COV2 and during in vitro viral escape selections. Finally, the maps reveal that mutations escaping the individual antibodies are already present in circulating SARS-CoV-2 strains. These complete escape maps enable interpretation of the consequences of mutations observed during viral surveillance.

scholarly journals Natural variants in SARS-CoV-2 Spike protein pinpoint structural and functional hotspots with implications for prophylaxis and therapeutic strategies

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Suman Pokhrel ◽  
Benjamin R. Kraemer ◽  
Scott Burkholz ◽  
Daria Mochly-Rosen
Keyword(s):  
Amino Acid ◽  
Severe Disease ◽  
Single Amino Acid ◽  
Amino Acid Substitutions ◽  
Severe Respiratory Distress ◽  
S Protein ◽  
Individual Sequences ◽  
Natural Variants ◽  
Novel Coronavirus ◽  
The Individual

AbstractIn December 2019, a novel coronavirus, termed severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), was identified as the cause of pneumonia with severe respiratory distress and outbreaks in Wuhan, China. The rapid and global spread of SARS-CoV-2 resulted in the coronavirus 2019 (COVID-19) pandemic. Earlier during the pandemic, there were limited genetic viral variations. As millions of people became infected, multiple single amino acid substitutions emerged. Many of these substitutions have no consequences. However, some of the new variants show a greater infection rate, more severe disease, and reduced sensitivity to current prophylaxes and treatments. Of particular importance in SARS-CoV-2 transmission are mutations that occur in the Spike (S) protein, the protein on the viral outer envelope that binds to the human angiotensin-converting enzyme receptor (hACE2). Here, we conducted a comprehensive analysis of 441,168 individual virus sequences isolated from humans throughout the world. From the individual sequences, we identified 3540 unique amino acid substitutions in the S protein. Analysis of these different variants in the S protein pinpointed important functional and structural sites in the protein. This information may guide the development of effective vaccines and therapeutics to help arrest the spread of the COVID-19 pandemic.

EFFECT OF PERACETIC ACID OXIDATION ON N-CONTAINING COMPONENTS OF HUMIC MATERIALS

1980 ◽  
Vol 60 (3) ◽  
pp. 541-548 ◽  
Author(s):  
M. SCHNITZER ◽  
D. A. HINDLE
Keyword(s):  
Amino Acid ◽  
Peracetic Acid ◽  
Amino Sugar ◽  
Chemical Oxidation ◽  
Acid Oxidation ◽  
Mild Oxidation ◽  
Total N ◽  
Different Types ◽  
Humic Materials ◽  
Insight Into

Three humic and one fulvic acid were degraded by mild chemical oxidation with peracetic acid, with special emphasis on the effects of this type of oxidation on N-containing components. The different types of N that were considered were NH4+-N, amino acid-N, amino sugar-N, NO2−-N + NO3−-N, and by difference from total N, "unknown" N. The behaviour toward mild chemical oxidation of all four preparations was essentially similar: there were decreases in mino acid-N, amino sugar-N and "unknown" N, increases in NH4+-N, NO2−-N + NO3−-N with one material, and in N-gases. The "unknown" N was not inert. Between 16.6 and 59.1% of the latter appeared to be converted, as a result of mild chemical oxidation, to NH3 and N-gases which were expelled from the systems. The results presented provide an insight into what happens to N-containing humic components as a result of mild oxidation.

The Evidence for Reduced Glyphosate Efficacy on Acetolactate Synthase–Inhibiting Herbicide-Resistant Yellow Nutsedge (Cyperus esculentus)

Weed Science ◽  
2016 ◽  
Vol 64 (3) ◽  
pp. 389-398
Author(s):  
Parsa Tehranchian ◽  
Jason K. Norsworthy ◽  
Matheus Palhano ◽  
Nicholas E. Korres ◽  
Scott McElroy ◽  
...  
Keyword(s):  
Amino Acid ◽  
Production Systems ◽  
Acetolactate Synthase ◽  
Dry Weight ◽  
Cross Resistance ◽  
Purple Nutsedge ◽  
Yellow Nutsedge ◽  
Epsps Gene ◽  
Treated Leaf ◽  
Als Inhibitors

A yellow nutsedge biotype (Res) from an Arkansas rice field has evolved resistance to acetolactate synthase (ALS)-inhibiting herbicides. TheResbiotype previously exhibited cross-resistance to ALS inhibitors from four chemical families (imidazolinone, pyrimidinyl benzoate, sulfonylurea, and triazolopyrimidine). Experiments were conducted to evaluate alternative herbicides (i.e., glyphosate, bentazon, propanil, quinclorac, and 2,4-D) currently labeled in Arkansas rice–soybean production systems. Based on the percentage of aboveground dry weight reduction, control of the yellow nutsedge biotypes with the labeled rate of bentazon, propanil, quinclorac, and 2,4-D was < 44%. Glyphosate (867 g ae ha−1) resulted in 68 and > 94% control of theResand susceptible yellow nutsedge biotypes, respectively, at 28 d after treatment. Dose-response studies were conducted to estimate the efficacy of glyphosate on theResbiotype, three susceptible yellow nutsedge biotypes, and purple nutsedge. Based on the dry weights, theResbiotype was ≥ 5- and ≥ 1.3-fold less responsive to glyphosate compared to the susceptible biotypes and purple nutsedge, respectively. Differences in absorption and translocation of radiolabeled glyphosate were observed among the yellow nutsedge biotypes and purple nutsedge. The susceptible biotype had less14C-glyphosate radioactivity in the tissues above the treated leaf and greater radioactivity in tissues below the treated leaf compared to theResbiotype and purple nutsedge. Reduced translocation of glyphosate in tissues below the treated leaf of theResbiotype could be a reason for the lower glyphosate efficacy in theResbiotype. No amino acid substitution that would correspond to glyphosate resistance was found in the 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) gene of theResbiotype. However, an amino acid (serine) addition was detected in the EPSPS gene of theResbiotype; albeit, it is not believed that this addition contributes to lower efficacy of glyphosate in this biotype.

scholarly journals Effect of carbon and nitrogen addition on nitrous oxide and carbon dioxide fluxes from thawing forest soils

2017 ◽  
Vol 31 (3) ◽  
pp. 339-349 ◽  
Author(s):  
Wu Haohao ◽  
Xu Xingkai ◽  
Duan Cuntao ◽  
Li TuanSheng ◽  
Cheng Weiguo
Keyword(s):  
Carbon Dioxide ◽  
Nitrous Oxide ◽  
Soil Moisture ◽  
Organic Carbon ◽  
Dissolved Organic Carbon ◽  
Forest Soils ◽  
Mixed Forest ◽  
Soil Core ◽  
Total N ◽  
Nitrogen Inputs

AbstractPacked soil-core incubation experiments were done to study the effects of carbon (glucose, 6.4 g C m−2) and nitrogen (NH4Cl and KNO3, 4.5 g N m−2) addition on nitrous oxide (N2O) and carbon dioxide (CO2) fluxes during thawing of frozen soils under two forest stands (broadleaf and Korean pine mixed forest and white birch forest) with two moisture levels (55 and 80% water-filled pore space). With increasing soil moisture, the magnitude and longevity of the flush N2O flux from forest soils was enhanced during the early period of thawing, which was accompanied by great NO3−-N consumption. Without N addition, the glucose-induced cumulative CO2fluxes ranged from 9.61 to 13.49 g CO2-C m−2, which was larger than the dose of carbon added as glucose. The single addition of glucose increased microbial biomass carbon but slightly affected soil dissolved organic carbon pool. Thus, the extra carbon released upon addition of glucose can result from the decomposition of soil native organic carbon. The glucose-induced N2O and CO2fluxes were both significantly correlated to the glucose-induced total N and dissolved organic carbon pools and influenced singly and interactively by soil moisture and KNO3addition. The interactive effects of glucose and nitrogen inputs on N2O and CO2fluxes from forest soils after frost depended on N sources, soil moisture, and vegetation types.

scholarly journals De Novo Synthesis of Amino Acids by the Ruminal Bacteria Prevotella bryantii B14,Selenomonas ruminantium HD4, and Streptococcus bovis ES1

1998 ◽  
Vol 64 (8) ◽  
pp. 2836-2843 ◽  
Author(s):  
Cengiz Atasoglu ◽  
Carmen Valdés ◽  
Nicola D. Walker ◽  
C. James Newbold ◽  
R. John Wallace
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
De Novo ◽  
Dependent Manner ◽  
Streptococcus Bovis ◽  
De Novo Synthesis ◽  
Ruminal Bacteria ◽  
Total N ◽  
Selenomonas Ruminantium ◽  
Prevotella Bryantii

ABSTRACT The influence of peptides and amino acids on ammonia assimilation and de novo synthesis of amino acids by three predominant noncellulolytic species of ruminal bacteria, Prevotella bryantii B14, Selenomonas ruminantiumHD4, and Streptococcus bovis ES1, was determined by growing these bacteria in media containing 15NH4Cl and various additions of pancreatic hydrolysates of casein (peptides) or amino acids. The proportion of cell N and amino acids formed de novo decreased as the concentration of peptides increased. At high concentrations of peptides (10 and 30 g/liter), the incorporation of ammonia accounted for less than 0.16 of bacterial amino acid N and less than 0.30 of total N. At 1 g/liter, which is more similar to peptide concentrations found in the rumen, 0.68, 0.87, and 0.46 of bacterial amino acid N and 0.83, 0.89, and 0.64 of total N were derived from ammonia by P. bryantii, S. ruminantium, andS. bovis, respectively. Concentration-dependent responses were also obtained with amino acids. No individual amino acid was exhausted in any incubation medium. For cultures of P. bryantii, peptides were incorporated and stimulated growth more effectively than amino acids, while cultures of the other species showed no preference for peptides or amino acids. Apparent growth yields increased by between 8 and 57%, depending on the species, when 1 g of peptides or amino acids per liter was added to the medium. Proline synthesis was greatly decreased when peptides or amino acids were added to the medium, while glutamate and aspartate were enriched to a greater extent than other amino acids under all conditions. Thus, the proportion of bacterial protein formed de novo in noncellulolytic ruminal bacteria varies according to species and the form and identity of the amino acid and in a concentration-dependent manner.

scholarly journals Comparison of the isotope dilution method for determination of the ileal endogenous amino acid losses with labelled diet and labelled pigs

2000 ◽  
Vol 83 (2) ◽  
pp. 123-130 ◽  
Author(s):  
Vincent Hess ◽  
Philippe Ganier ◽  
Jean-Noel Thibault ◽  
Bernard Sève
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
Latin Square ◽  
Isotope Dilution Method ◽  
Dilution Method ◽  
First Case ◽  
Endogenous Protein ◽  
The Individual ◽  
Protein Free Diet

The aims of the present study were first to compare the amino acid dilution method performed using labelled animals with that using labelled diets, and second to determine real digestibilities and total ileal endogenous losses of N and amino acids. Two diets containing pea cultivars (Solara and Amino) and a protein-free diet were compared in a 3 × 3 Latin-square experiment. The three pigs were each prepared with an ileo-rectal anastomosis and were continuously infused with [1-13C]leucine. For each cultivar,15N-labelled and unlabelled diets were formulated. The real digestibility and endogenous losses of leucine were higher when obtained by labelling the pig than by labelling the foodstuff. This was due either to the inadequate estimation of the endogenous protein enrichment in the first case or to the importance of dietary N recycling in the second case. However, in both cases the ileal endogenous losses of N and amino acids were higher than the basal losses determined with the protein-free diet. There were significant differences between the two pea cultivars in terms of phenylalanine and leucine when measured with labelled diets. It is suggested that, although ileal endogenous losses may be underestimated, using labelled feedstuffs is of great interest due to the direct estimation of the individual amounts of amino acids.

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