scholarly journals Genome-Wide Identification and Evolutionary Analysis of the Animal Specific ETS Transcription Factor Family

2009 ◽  
Vol 5 ◽  
pp. EBO.S2948 ◽  
Author(s):  
Zhipeng Wang ◽  
Qin Zhang
Keyword(s):  
Transcription Factor ◽  
Evolutionary Analysis ◽  
Transcription Factor Family ◽  
Genome Wide ◽  
Ets Transcription Factor

scholarly journals Genome-wide identification and comparative evolutionary analysis of the Dof transcription factor family in physic nut and castor bean

PeerJ ◽  
2019 ◽  
Vol 7 ◽  
pp. e6354 ◽  
Author(s):  
Zhi Zou ◽  
Xicai Zhang
Keyword(s):  
Transcription Factor ◽  
Stress Responses ◽  
Castor Bean ◽  
Ricinus Communis ◽  
Transcriptome Profiling ◽  
Evolutionary Analysis ◽  
Physic Nut ◽  
Transcription Factor Family ◽  
Genome Wide ◽  
A Genome

DNA-binding with one finger (Dof) proteins comprise a plant-specific transcription factor family involved in plant growth, development and stress responses. This study presents a genome-wide comparison of Dof family genes in physic nut (Jatropha curcas) and castor bean (Ricinus communis), two Euphorbiaceae plants that have not experienced any recent whole-genome duplication. A total of 25 or 24 Dof genes were identified from physic nut and castor genomes, respectively, where JcDof genes are distributed across nine out of 11 chromosomes. Phylogenetic analysis assigned these genes into nine groups representing four subfamilies, and 24 orthologous groups were also proposed based on comparison of physic nut, castor, Arabidopsis and rice Dofs. Conserved microsynteny was observed between physic nut and castor Dof-coding scaffolds, which allowed anchoring of 23 RcDof genes to nine physic nut chromosomes. In contrast to how no recent duplicate was present in castor, two tandem duplications and one gene loss were found in the Dof gene family of physic nut. Global transcriptome profiling revealed diverse patterns of Jc/RcDof genes over various tissues, and key Dof genes involved in flower development and stress response were also identified in physic nut. These findings provide valuable information for further studies of Dof genes in physic nut and castor.

Genome-wide identification and evolutionary analysis of the plant specific SBP-box transcription factor family

Gene ◽  
2008 ◽  
Vol 418 (1-2) ◽  
pp. 1-8 ◽  
Author(s):  
An-Yuan Guo ◽  
Qi-Hui Zhu ◽  
Xiaocheng Gu ◽  
Song Ge ◽  
Ji Yang ◽  
...  
Keyword(s):  
Transcription Factor ◽  
Evolutionary Analysis ◽  
Transcription Factor Family ◽  
Genome Wide

scholarly journals Genome-Wide Investigation of the NAC Transcription Factor Family in Miscanthus sinensis and Expression Analysis Under Various Abiotic Stress

2021 ◽  
Vol 12 ◽  
Author(s):  
Gang Nie ◽  
Zhongfu Yang ◽  
Jie He ◽  
Aiyu Liu ◽  
Jiayi Chen ◽  
...  
Keyword(s):  
Transcription Factor ◽  
Gene Family ◽  
Gene Structure ◽  
Nac Transcription Factor ◽  
Chromosomal Mapping ◽  
Miscanthus Sinensis ◽  
Specific Gene ◽  
Evolutionary Analysis ◽  
Transcription Factor Family ◽  
Genome Wide

The NAC transcription factor family is deemed to be a large plant-specific gene family that plays important roles in plant development and stress response. Miscanthus sinensis is commonly planted in vast marginal land as forage, ornamental grass, or bioenergy crop which demand a relatively high resistance to abiotic stresses. The recent release of a draft chromosome-scale assembly genome of M. sinensis provided a basic platform for the genome-wide investigation of NAC proteins. In this study, a total of 261 M. sinensis NAC genes were identified and a complete overview of the gene family was presented, including gene structure, conserved motif compositions, chromosomal distribution, and gene duplications. Results showed that gene length, molecular weights (MW), and theoretical isoelectric points (pI) of NAC family were varied, while gene structure and motifs were relatively conserved. Chromosomal mapping analysis found that the M. sinensis NAC genes were unevenly distributed on 19 M. sinensis chromosomes, and the interchromosomal evolutionary analysis showed that nine pairs of tandem duplicates genes and 121 segmental duplications were identified, suggesting that gene duplication, especially segmental duplication, is possibly associated with the amplification of M. sinensis NAC gene family. The expression patterns of 14 genes from M. sinensis SNAC subgroup were analyzed under high salinity, PEG, and heavy metals, and multiple NAC genes could be induced by the treatment. These results will provide a very useful reference for follow-up study of the functional characteristics of NAC genes in the mechanism of stress-responsive and potential roles in the development of M. sinensis.

Genome-wide identification and expression analysis of the MADS-box transcription factor family in Camellia sinensis

2021 ◽  
Vol 62 (2) ◽  
pp. 249-264
Author(s):  
Zai-Bao Zhang ◽  
Yuan-Jin Jin ◽  
Hou-Hong Wan ◽  
Lin Cheng ◽  
Zhi-Guo Feng
Keyword(s):  
Transcription Factor ◽  
Expression Analysis ◽  
Camellia Sinensis ◽  
Mads Box ◽  
Transcription Factor Family ◽  
Genome Wide

scholarly journals Genome-wide Identification of WRKY transcription factor family members in sorghum (Sorghum bicolor (L.) moench)

PLoS ONE ◽  
2020 ◽  
Vol 15 (8) ◽  
pp. e0236651
Author(s):  
Elamin Hafiz Baillo ◽  
Muhammad Sajid Hanif ◽  
Yinghui Guo ◽  
Zhengbin Zhang ◽  
Ping Xu ◽  
...  
Keyword(s):  
Transcription Factor ◽  
Sorghum Bicolor ◽  
Family Members ◽  
Wrky Transcription Factor ◽  
Transcription Factor Family ◽  
Genome Wide ◽  
Sorghum Bicolor L
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