scholarly journals In situ determination of cellular DMSP and pigment quotas in a Prorocentrum minimum bloom near the Falkland Islands

2014 ◽  
Vol 5 (2) ◽  
pp. 123 ◽  
Author(s):  
Tyler Cyronak ◽  
Erin O’Reilly ◽  
Peter A. Lee ◽  
Giacomo R. DiTullio
Keyword(s):  
Prorocentrum Minimum ◽  
Marine Phytoplankton ◽  
Individual Species ◽  
Falkland Islands ◽  
Growth Stages ◽  
Wide Scale ◽  
Biochemical Analyses ◽  
Species Specific ◽  
The Impact

Marine phytoplankton play critical roles in the biogeochemistry of open and coastal oceans. However, the impact that individual species have on an ecosystem-wide scale can strongly depend on the production of cellular compounds, especially those that are climatically active such as dimethylsulfide (DMS). Herein, we use sorting flow cytometry to separate a distinct phytoplankton population from four samples taken along the Patagonian shelf near the Falkland Islands. Morphological, genetic, and biochemical analyses demonstrated that three of the sorted samples were dominated by a bloom of the dinoflagellate Prorocentrum minimum. Cellular quotas of the DMS-precursor dimethylsulfoniopropionate (DMSP) ranged from 1.23–4.11 pg cell−1 in the same population at different sampling stations. Causes of this variability may be due to different growth stages of the P. minimum bloom or changes in other environmental variables. Overall, in situ intracellular DMSP concentrations were lower than what would be expected based on previous, culture-based measurements. We demonstrate the difficulties inherent in sorting individual phytoplankton species from natural samples in order to determine in situ species-specific cellular quotas of important biogeochemical compounds.

Vocalizing during gaps in anthropogenic noise is an uncommon trait for enhancing communication in songbirds

2017 ◽  
Vol 1 ◽  
pp. TLP16D ◽  
Author(s):  
Darren S. Proppe ◽  
Emily Finch
Keyword(s):  
Vocal Communication ◽  
Anthropogenic Noise ◽  
Individual Species ◽  
Ambient Conditions ◽  
Road Noise ◽  
Point Count ◽  
Specific Analysis ◽  
Species Specific ◽  
Acoustic Output ◽  
The Impact

Abstract Mounting evidence suggests that anthropogenic noise negatively impacts many wildlife species, including songbirds. One mechanism by which noise affects songbirds may be through acoustic obstruction to their systems of vocal communication. However, many species increase the amplitude or pitch of their vocalizations, which may partially mitigate the impact of high noise levels. When the amplitude of anthropogenic noise varies over time, such as near a moderate-use highway, short gaps between noise events may also provide an important opportunity for communication. But, whether songbirds adjust vocalization rates rapidly to avoid overlap with noise is unknown for most species. We used acoustic playback to expose songbirds to simulated road noise during the dawn chorus in otherwise quiet habitats. We measured vocalization rates under ambient conditions and during quiet gaps embedded within playback of road noise to assess whether a community of songbirds, and nineteen individual species, vocalize more regularly during noise gaps. There were no significant differences in community-wide acoustic output. Species-specific analysis revealed that only four species altered their vocal rates during quiet gaps in noise, but that the direction of the effect varied by species. Point count results revealed that birds generally remained on site for the duration of the experiment, suggesting that abandonment of noisy locations was unlikely to confound our results. In sum, increasing vocal output during short gaps in noise occurred in only a handful of species, perhaps contributing to the limited number of species that are found within noisy habitats.

Tracing plant water fluxes in ecosystems by stable isotopes along the soil-plant and plant-atmosphere interfaces

2020 ◽  
Author(s):  
Christiane Werner
Keyword(s):  
Water Uptake ◽  
Large Scale ◽  
Temporal Dynamics ◽  
Root Water Uptake ◽  
Plant Water ◽  
Water Fluxes ◽  
Terrestrial Vegetation ◽  
Species Specific ◽  
The Impact

<p>Terrestrial vegetation is a main driver of ecosystem water fluxes, as plants mediate the water fluxes within the soil-vegetation-atmosphere continuum. Stable isotopologues of water are efficient tracer to follow the water transfer in soils, uptake by plants, transport in stems and release into the atmosphere through stomata. The development of in-situ methods coupled to isotope spectroscopy does now enable real-time in-situ water vapour isotopologue measurements revealing high spatial and temporal dynamics, such as adaptations in root water uptake depths (within hours to days) or the impact of transpirational fluxes on atmospheric moisture.</p><p>Examples will be given how isotopes can be used to inform the complex interplay between plant ecophysiological adaptations and hydrological processes. For example, root water uptake is not solely driven by soil water availability but has to be understood in the context of species-specific regulation of active zones in their rooting system determining the conductivity between soil and roots regulating uptake depths. The latter has also to be evaluated in context of the nutrient demand and the spatial nutrient availability. Similarly, plant water transport and losses are a fined tuned interplay between species-specific structural and functional adaptations and atmospheric processes.</p><p>Finally, first data of a large-scale ecosystem labelling experiment at the Biosphere 2 tropical rainforest of the B2 Wald, Atmosphere, and Live Dynamics (B2WALD) will be presented.</p>

scholarly journals Vocalizing during gaps in anthropogenic noise is an uncommon trait for enhancing communication in songbirds

2017 ◽  
Vol 1 (1) ◽  
pp. 1-1
Author(s):  
Darren S. Proppe ◽  
Emily Finch
Keyword(s):  
Vocal Communication ◽  
Anthropogenic Noise ◽  
Individual Species ◽  
Ambient Conditions ◽  
Road Noise ◽  
Point Count ◽  
Specific Analysis ◽  
Species Specific ◽  
Acoustic Output ◽  
The Impact

Mounting evidence suggests that anthropogenic noise neg-atively impacts many wildlife species, including songbirds. One mechanism by which noise affects songbirds may be through acoustic obstruction to their systems of vocal communication. However, many species increase the amplitude or pitch of their vocalizations, which may partially mitigate the impact of high noise levels. When the amplitude of anthropogenic noise varies over time, such as near a moderate-use highway, short gaps between noise events may also provide an important oppor- tunity for communication. But, whether songbirds adjust vocalization rates rapidly to avoid overlap with noise is unknown for most species. We used acoustic playback to expose song- birds to simulated road noise during the dawn chorus in oth- erwise quiet habitats. We measured vocalization rates under ambient conditions and during quiet gaps embedded within playback of road noise to assess whether a community of songbirds, and nineteen individual species, vocalize more reg- ularly during noise gaps. There were no significant differences in community-wide acoustic output. Species-specific analysis revealed that only four species altered their vocal rates during quiet gaps in noise, but that the direction of the effect varied by species. Point count results revealed that birds generally remained on site for the duration of the experiment, suggesting that abandonment of noisy locations was unlikely to confound our results. In sum, increasing vocal output during short gaps in noise occurred in only a handful of species, perhaps con- tributing to the limited number of species that are found within noisy habitats.

In situ Quantification of the Impact of Episodic Enhanced Turbulent Events in Large Phytoplankton

2011 ◽  
Author(s):  
Percy L. Donaghay ◽  
Jan Rines ◽  
James Sullivan
Keyword(s):  
The Impact

scholarly journals Signatures of conserved and unique molecular features in Afrotheria

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Arangasamy Yazhini ◽  
Narayanaswamy Srinivasan ◽  
Sankaran Sandhya
Keyword(s):  
Ribosomal Proteins ◽  
Individual Species ◽  
Functional Domain ◽  
Nucleic Acid Binding ◽  
Uncharacterized Protein ◽  
Homologous Proteins ◽  
Functional Roles ◽  
Molecular Features ◽  
Specific Proteins ◽  
Species Specific

AbstractAfrotheria is a clade of African-origin species with striking dissimilarities in appearance and habitat. In this study, we compared whole proteome sequences of six Afrotherian species to obtain a broad viewpoint of their underlying molecular make-up, to recognize potentially unique proteomic signatures. We find that 62% of the proteomes studied here, predominantly involved in metabolism, are orthologous, while the number of homologous proteins between individual species is as high as 99.5%. Further, we find that among Afrotheria, L. africana has several orphan proteins with 112 proteins showing < 30% sequence identity with their homologues. Rigorous sequence searches and complementary approaches were employed to annotate 156 uncharacterized protein sequences and 28 species-specific proteins. For 122 proteins we predicted potential functional roles, 43 of which we associated with protein- and nucleic-acid binding roles. Further, we analysed domain content and variations in their combinations within Afrotheria and identified 141 unique functional domain architectures, highlighting proteins with potential for specialized functions. Finally, we discuss the potential relevance of highly represented protein families such as MAGE-B2, olfactory receptor and ribosomal proteins in L. africana and E. edwardii, respectively. Taken together, our study reports the first comparative study of the Afrotherian proteomes and highlights salient molecular features.

Bayesian analysis reveals the impact of load partitioning on microstructural evolution in Ti-6Al-4V during in-situ tensile loading

Materialia ◽  
2021 ◽  
Vol 15 ◽  
pp. 100993
Author(s):  
N. Armstrong ◽  
P.A. Lynch ◽  
P. Cizek ◽  
S.R. Kada ◽  
S. Slater ◽  
...  
Keyword(s):  
Bayesian Analysis ◽  
Microstructural Evolution ◽  
Tensile Loading ◽  
The Impact

scholarly journals Solid-Phase Extraction Embedded Dialysis (SPEED), an Innovative Procedure for the Investigation of Microbial Specialized Metabolites

Marine Drugs ◽  
2021 ◽  
Vol 19 (7) ◽  
pp. 371
Author(s):  
Phuong-Y Mai ◽  
Géraldine Le Goff ◽  
Erwan Poupon ◽  
Philippe Lopes ◽  
Xavier Moppert ◽  
...  
Keyword(s):  
Solid Phase Extraction ◽  
Solid Phase ◽  
Chemical Space ◽  
Molecular Profile ◽  
Phase Extraction ◽  
Specialized Metabolites ◽  
Streptomyces Albidoflavus ◽  
Cultivation Process ◽  
The Impact

Solid-phase extraction embedded dialysis (SPEED technology) is an innovative procedure developed to physically separate in-situ, during the cultivation, the mycelium of filament forming microorganisms, such as actinomycetes and fungi, and the XAD-16 resin used to trap the secreted specialized metabolites. SPEED consists of an external nylon cloth and an internal dialysis tube containing the XAD resin. The dialysis barrier selects the molecular weight of the trapped compounds, and prevents the aggregation of biomass or macromolecules on the XAD beads. The external nylon promotes the formation of a microbial biofilm, making SPEED a biofilm supported cultivation process. SPEED technology was applied to the marine Streptomyces albidoflavus 19-S21, isolated from a core of a submerged Kopara sampled at 20 m from the border of a saltwater pond. The chemical space of this strain was investigated effectively using a dereplication strategy based on molecular networking and in-depth chemical analysis. The results highlight the impact of culture support on the molecular profile of Streptomyces albidoflavus 19-S21 secondary metabolites.

scholarly journals Morphology and crystallization kinetics of Rubber-modified Nylon 6 Prepared by Anionic In-situ Polymerization

2020 ◽  
Vol 27 (1) ◽  
pp. 204-215
Author(s):  
Hongkai Zhao ◽  
Dengchao Zhang ◽  
Yingshuang Li
Keyword(s):  
Crystallization Kinetics ◽  
In Situ Polymerization ◽  
Good Description ◽  
Nylon 6 ◽  
Avrami Equation ◽  
Infrared Analysis ◽  
Chain Segment ◽  
The Impact ◽  
Kinetics Of

AbstractIn this work, we modified nylon 6 with liquid rubber by in-situ polymerization. The infrared analysis suggested that HDI urea diketone is successfully blocked by caprolactam after grafting on hydroxyl of HTPB, and the rubber-modified nylon copolymer is generated by the anionic polymerization. The impact section analysis indicated the rubber-modified nylon 6 resin exhibited an alpha crystal form.With an increase in the rubber content, nylon 6 was more likely to generate stable α crystal. Avrami equation was a good description of the non-isothermal crystallization kinetics of nylon-6 and rubber-modified nylon-6 resin. Moreover, it is found that the initial crystallization temperature of nylon-6 chain segment decreased due to the flexible rubber chain segment. n value of rubber-modified nylon-6 indicated that its growth was the coexistence of two-dimensional discoid and three-dimensional spherulite growth. Finally, the addition of the rubber accelerated the crystallization rate of nylon 6.

scholarly journals Codon harmonization reduces amino acid misincorporation in bacterially expressed P. falciparum proteins and improves their immunogenicity

AMB Express ◽  
2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Neeraja Punde ◽  
Jennifer Kooken ◽  
Dagmar Leary ◽  
Patricia M. Legler ◽  
Evelina Angov
Keyword(s):  
Protein Structure ◽  
Amino Acid ◽  
Codon Usage ◽  
Dna Sequences ◽  
Structural Integrity ◽  
Host Cells ◽  
Loss Of Function ◽  
Species Specific ◽  
And Function ◽  
The Impact

Abstract Codon usage frequency influences protein structure and function. The frequency with which codons are used potentially impacts primary, secondary and tertiary protein structure. Poor expression, loss of function, insolubility, or truncation can result from species-specific differences in codon usage. “Codon harmonization” more closely aligns native codon usage frequencies with those of the expression host particularly within putative inter-domain segments where slower rates of translation may play a role in protein folding. Heterologous expression of Plasmodium falciparum genes in Escherichia coli has been a challenge due to their AT-rich codon bias and the highly repetitive DNA sequences. Here, codon harmonization was applied to the malarial antigen, CelTOS (Cell-traversal protein for ookinetes and sporozoites). CelTOS is a highly conserved P. falciparum protein involved in cellular traversal through mosquito and vertebrate host cells. It reversibly refolds after thermal denaturation making it a desirable malarial vaccine candidate. Protein expressed in E. coli from a codon harmonized sequence of P. falciparum CelTOS (CH-PfCelTOS) was compared with protein expressed from the native codon sequence (N-PfCelTOS) to assess the impact of codon usage on protein expression levels, solubility, yield, stability, structural integrity, recognition with CelTOS-specific mAbs and immunogenicity in mice. While the translated proteins were expected to be identical, the translated products produced from the codon-harmonized sequence differed in helical content and showed a smaller distribution of polypeptides in mass spectra indicating lower heterogeneity of the codon harmonized version and fewer amino acid misincorporations. Substitutions of hydrophobic-to-hydrophobic amino acid were observed more commonly than any other. CH-PfCelTOS induced significantly higher antibody levels compared with N-PfCelTOS; however, no significant differences in either IFN-γ or IL-4 cellular responses were detected between the two antigens.

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