scholarly journals From Polyalthia to Polyalthiopsis (Annonaceae): transfer of species enlarges a previously monotypic genus

PhytoKeys ◽  
2020 ◽  
Vol 148 ◽  
pp. 71-91 ◽  
Author(s):  
Bine Xue ◽  
Hong-Bo Ding ◽  
Gang Yao ◽  
Yun-Yun Shao ◽  
Xiao-Jing Fan ◽  
...  
Keyword(s):  
Phylogenetic Analyses ◽  
Strong Support ◽  
Morphological Data ◽  
Phylogenetic Position ◽  
New Combinations ◽  
Monotypic Genus ◽  
Key To Species ◽  
Sister Clade ◽  
Molecular Phylogenetic

The genus Polyalthiopsis Chaowasku (Annonaceae) was a poorly known monotypic genus from Vietnam that was recently segregated from the highly polyphyletic genus Polyalthia s.l. The sister clade relationship between Polyalthiopsis and Miliusa was not well established in previous study. The phylogenetic position of two Polyalthia spp. from China, P. chinensis S.K.Wu ex P.T.Li and P. verrucipes C.Y.Wu ex P.T.Li, remains unresolved and is shown here to be phylogenetically affiliated with Polyalthiopsis. Phylogenetic analyses of six chloroplast regions (matK, ndhF, psbA-trnH, rbcL, trnL-F and ycf1; ca.7.3 kb, 60 accessions) unambiguously placed Polyalthia chinensis and P. verrucipes in the same clade with Polyalthiopsis floribunda (PP = 1, MPBS = 97%); the entire clade is sister to Miliusa with weak to strong support (PP = 1, MPBS = 54%). Polyalthia chinensis and P. verrucipes share several diagnostic characters with Polyalthiopsis floribunda, including the raised midrib on the upper surface of the leaf in vivo, conspicuous foliar glands when dried, petiole with transverse striations when dried and axillary inflorescences. The two species differ from Polyalthiopsis floribunda in having fewer flowers per inflorescence, longer linear petals and two ovules per carpel. On the basis of the combined molecular phylogenetic and morphological data, we propose two new combinations, Polyalthiopsis chinensis (S.K.Wu ex P.T.Li) B.Xue & Y.H.Tan and Polyalthiopsis verrucipes (C.Y.Wu ex P.T.Li) B.Xue & Y.H.Tan. The protologue of Polyalthia verrucipes did not include a description of the flowers, which we provide here. An updated description for the genus Polyalthiopsis and a key to species in the genus Polyalthiopsis is also provided.

scholarly journals The phylogenetic position of Polysiphonia scopulorum (Rhodomelaceae, Rhodophyta) based on molecular analyses and morphological observations of specimens from the type locality in Western Australia

Phytotaxa ◽  
2017 ◽  
Vol 324 (1) ◽  
pp. 51 ◽  
Author(s):  
JOHN M. HUISMAN ◽  
BYEONGSEOK KIM ◽  
MYUNG SOOK KIM
Keyword(s):  
Western Australia ◽  
Phylogenetic Analyses ◽  
Morphological Characteristics ◽  
Sensu Stricto ◽  
Type Locality ◽  
Phylogenetic Position ◽  
Rbcl Gene ◽  
Considerable Uncertainty ◽  
Sister Clade ◽  
Molecular Phylogenetic

Considerable uncertainty surrounds the phylogenetic position of Polysiphonia scopulorum, a species with an apparently cosmopolitan distribution. Here we report, for the first time, molecular phylogenetic analyses using plastid rbcL gene sequences and morphological observations of P. scopulorum collected from the type locality, Rottnest Island in Western Australia. Morphological characteristics of the Rottnest Island specimens allowed unequivocal identification, however, the sequence analyses uncovered discrepancies in previous molecular studies that included specimens identified as P. scopulorum from other locations. The phylogenetic evidence clearly revealed that P. scopulorum from Rottnest Island formed a sister clade with P. caespitosa from Spain (JX828149 as P. scopulorum) with moderate support, but that it differed from specimens identified as P. scopulorum from the U.S.A. (AY396039, EU492915). In light of this, we suggest that P. scopulorum be considered an endemic species with a distribution restricted to Australia. Our results showed the existence of several distinct clades among the species of Polysiphonia sensu lato, including the clade containing P. scopulorum which did not join with the generitype Polysiphonia stricta (i.e., Polysiphonia sensu stricto). This suggests that the P. scopulorum clade might represent a separate genus, however, further studies including multi-gene analyses are recommended before recognizing any segregate taxa.

scholarly journals Multiple molecular evidences for a living mammalian fossil

2007 ◽  
Vol 104 (18) ◽  
pp. 7495-7499 ◽  
Author(s):  
Dorothée Huchon ◽  
Pascale Chevret ◽  
Ursula Jordan ◽  
C. William Kilpatrick ◽  
Vincent Ranwez ◽  
...  
Keyword(s):  
Large Scale ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Molecular Dating ◽  
Morphological Data ◽  
Phylogenetic Position ◽  
Living Fossil ◽  
Sister Clade ◽  
Mammalian Fossil

Laonastes aenigmamus is an enigmatic rodent first described in 2005. Molecular and morphological data suggested that it is the sole representative of a new mammalian family, the Laonastidae, and a member of the Hystricognathi. However, the validity of this family is controversial because fossil-based phylogenetic analyses suggest that Laonastes is a surviving member of the Diatomyidae, a family considered to have been extinct for 11 million years. According to these data, Laonastes and Diatomyidae are the sister clade of extant Ctenodactylidae (i.e., gundies) and do not belong to the Hystricognathi. To solve the phylogenetic position of Laonastes, we conducted a large-scale molecular phylogeny of rodents. The analysis includes representatives of all major rodent taxonomic groups and was based on 5.5 kb of sequence data from four nuclear and two mitochondrial genes. To further validate the obtained results, a short interspersed element insertion analysis including 11 informative loci was also performed. Our molecular data based on sequence and short interspersed element analyses unambiguously placed Laonastes as a sister clade of gundies. All alternative hypotheses were significantly rejected based on Shimodaira–Hasegawa tests, supporting the idea that Laonastes does not belong to the Hystricognathi. Molecular dating analysis also supports an ancient divergence, ≈44 Mya ago, between Ctenodactylidae and Laonastes. These combined analyses support the hypothesis that Laonastes is indeed a living fossil. Protection of this surviving species would conserve an ancient mammalian family.

Phylogenomic insights into the Fascicularia-Ochagavia group (Bromelioideae, Bromeliaceae)

2019 ◽  
Vol 192 (4) ◽  
pp. 642-655
Author(s):  
Juraj Paule ◽  
Roswitha Schmickl ◽  
Tomáš Fér ◽  
Sabine Matuszak-Renger ◽  
Heidemarie Halbritter ◽  
...  
Keyword(s):  
Phylogenetic Analyses ◽  
Sem Analysis ◽  
Phylogenetic Position ◽  
Robinson Crusoe ◽  
Sem Images ◽  
Phylogenetic Studies ◽  
Sister Clade ◽  
Molecular Phylogenetic ◽  
Group A ◽  
Taxonomic Implications

Abstract Ochagavia (four species) and Fascicularia (one species) form a well-supported clade of the early-diverging Bromelioideae. The two genera are morphologically similar, but they can be easily discerned on the basis of generative characters. Besides the species distributed on the Chilean mainland, the group includes O. elegans, endemic to the Robinson Crusoe Island of the Juan Fernández Islands. In previous molecular phylogenetic studies, O. elegans formed a sister clade to the remainder of Fascicularia and Ochagavia. A phylogenomic approach, including nearly complete and, in five cases, full plastomes (c. 160 kbp) and the nuclear rDNA cistron (c. 6 kbp), and scanning electron microscope (SEM) images of pollen were used to analyse relationships in the Fascicularia-Ochagavia group. Plastome and nuclear trees were largely congruent and supported previous phylogenetic analyses of O. elegans being sister to the remainder of the group. A divergent phylogenetic position was suggested for O. carnea using different organellar trees. SEM analysis of pollen supported the division of Fascicularia and Ochagavia. Evolutionary and taxonomic implications of our results are discussed.

scholarly journals Phylogenetic relationships of xenodermid snakes (Squamata: Serpentes: Xenodermidae), with the description of a new genus

2021 ◽  
Vol 71 ◽  
pp. 747-763
Author(s):  
V. Deepak ◽  
Samuel Lalronunga ◽  
Esther Lalhmingliani ◽  
Abhijit Das ◽  
Surya Narayanan ◽  
...  
Keyword(s):  
Phylogenetic Relationships ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Strong Support ◽  
Nuclear Gene ◽  
Morphological Data ◽  
Data Set ◽  
Molecular Phylogenetic ◽  
East And Southeast Asia ◽  
Nuclear Gene Sequence

Xenodermidae is a generally poorly known lineage of caenophidian snakes found in South, East and Southeast Asia. We report molecular phylogenetic analyses for a multilocus data set comprising all five currently recognised genera and including new mitochondrial and nuclear gene sequence data for the recently described Stoliczkia vanhnuailianai. Our phylogenetic results provide very strong support for the non-monophyly of Stoliczkia, as presently constituted, with S. borneensis being more closely related to Xenodermus than to the Northeast Indian S. vanhnuailianai. Based on phylogenetic relationships and morphological distinctiveness, we transfer Stoliczkia borneensis to a new monotypic genus endemic to Borneo, Paraxenodermusgen. nov. We also present new morphological data for P. borneensis.

scholarly journals A second species of Pseuduvaria in China: the identity of the enigmatic species Meiogyne kwangtungensis

PhytoKeys ◽  
2021 ◽  
Vol 172 ◽  
pp. 1-15
Author(s):  
Qing-Long Wang ◽  
Hui Zhang ◽  
Yun-Yun Shao ◽  
Zhu-Nian Wang ◽  
Bine Xue
Keyword(s):  
Phylogenetic Analyses ◽  
Morphological Data ◽  
New Combination ◽  
Full Description ◽  
Key To Species ◽  
Molecular Phylogenetic ◽  
Generic Affinity ◽  
Floral Characters ◽  
First Time ◽  
Made In

Meiogyne kwangtungensis is a rare species endemic to Hainan, China, known just from two fruiting collections made in the 1930s. Although it was published under the name Meiogyne in 1976, it was suggested that it might be better placed within Pseuduvaria or Mitrephora. For decades, this species was never collected again, thus its true generic affinity remained unresolved due to the lack of flowers. During a field exploration in Hainan, we re-discovered this species and collected a flowering specimen for the first time. The flower immediately confirmed its affinity with Pseuduvaria. Phylogenetic analyses of five chloroplast regions (psbA-trnH, trnL-F, matK, rbcL, and atpB-rbcL; ca. 4.2 kb, 70 accessions) also unambiguously placed Meiogyne kwangtungensis in the Pseuduvaria clade (PP = 1.00, ML BS = 99%). Morphologically, it is most similar to P. multiovulata which is endemic to Myanmar and Thailand, both with often-paired flowers, long pedicels and short peduncles, and often 1–2 monocarps. However, it differs in having smaller flowers with kidney-shaped glands on the inner petals, fewer stamens and carpels, smaller ovoid monocarps with an apicule and fewer seeds. On the basis of the combined molecular phylogenetic and morphological data, we propose a new combination, Pseuduvaria kwangtungensis (P.T.Li) Qing L.Wang & B.Xue. A full description including floral characters and a color plate are provided here for this species. A key to species in the genus Pseuduvaria in China is also provided.

scholarly journals A molecular phylogenetic appraisal of the acanthostominesAcanthostomumandTimoniellaand their position within Cryptogonimidae (Trematoda: Opisthorchioidea)

PeerJ ◽  
2017 ◽  
Vol 5 ◽  
pp. e4158 ◽  
Author(s):  
Andrés Martínez-Aquino ◽  
Victor M. Vidal-Martínez ◽  
M. Leopoldina Aguirre-Macedo
Keyword(s):  
Phylogenetic Analyses ◽  
Phylogenetic Reconstruction ◽  
Internal Transcribed Spacers ◽  
Morphological Data ◽  
Phylogenetic Position ◽  
Parasitic Infections ◽  
Larval Stages ◽  
Ecological Implications ◽  
Molecular Phylogenetic ◽  
28S Ribosomal Dna

The phylogenetic position of three taxa from two trematode genera, belonging to the subfamily Acanthostominae (Opisthorchioidea: Cryptogonimidae), were analysed using partial 28S ribosomal DNA (Domains 1–2) and internal transcribed spacers (ITS1–5.8S–ITS2). Bayesian inference and Maximum likelihood analyses of combined 28S rDNA and ITS1 + 5.8S + ITS2 sequences indicated the monophyly of the genusAcanthostomum(A.cf.americanumandA. burminis) and paraphyly of the Acanthostominae.These phylogenetic relationships were consistent in analyses of 28S alone and concatenated 28S + ITS1 + 5.8S + ITS2 sequences analyses. Based on molecular phylogenetic analyses, the subfamily Acanthostominae is therefore a paraphyletic taxon, in contrast with previous classifications based on morphological data. Phylogenetic patterns of host specificity inferred from adult stages of other cryptogonimid taxa are also well supported. However, analyses using additional genera and species are necessary to support the phylogenetic inferences from this study. Our molecular phylogenetic reconstruction linked two larval stages ofA.cf.americanumcercariae and metacercariae. Here, we present the evolutionary and ecological implications of parasitic infections in freshwater and brackish environments.

The identity of Polyalthia florulenta (Annonaceae): a second species of Wangia in China

Phytotaxa ◽  
2016 ◽  
Vol 283 (2) ◽  
pp. 163 ◽  
Author(s):  
BINE XUE ◽  
YUN-HONG TAN ◽  
XING-ER YE
Keyword(s):  
Phylogenetic Analyses ◽  
Flower Morphology ◽  
Morphological Data ◽  
New Combination ◽  
Glandular Tissue ◽  
Key To Species ◽  
Diagnostic Characters ◽  
Molecular Phylogenetic

The taxonomic placement of Polyalthia florulenta C.Y.Wu ex P.T.Li has not been clarified. Phylogenetic analyses of eight chloroplast regions (matK, ndhF, ndhF-rpl32, psbA-trnH, rbcL, rpl32-trnL, trnL-F and ycf1; ca. 9.2 kb, 66 taxa) unambiguously placed Polyalthia florulenta in a subclade of tribe Miliuseae, sister to Wangia saccopetaloides. Polyalthia flourulenta shares several diagnostic characters with Wangia saccopetaloides, including leaf-opposed inflorescences, sepaloid outer petals and saccate inner petals with basal glandular tissue. It differs from Wangia saccopetaloides in having membranous leaf laminas, single-flowered inflorescences, subglobose single-seeded monocarps, and spiniform endosperm rumination. On the basis of the combined molecular phylogenetic and morphological data, we propose a new combination, Wangia florulenta (C.Y.Wu ex P.T.Li) B.Xue. As the protologue description was based on material lacking mature flowers, we provide a detailed description of flower morphology. A key to species in the genus Wangia is also provided.

scholarly journals Disentangling relationships among eastern Mediterranean Cymbalaria including description of a novel species from the southern Peloponnese (Greece)

2021 ◽  
Vol 307 (2) ◽  
Author(s):  
Pau Carnicero ◽  
Núria Garcia-Jacas ◽  
Llorenç Sáez ◽  
Theophanis Constantinidis ◽  
Mercè Galbany-Casals
Keyword(s):  
Eastern Mediterranean ◽  
Phylogenetic Analyses ◽  
Taxonomic Revision ◽  
Distribution Patterns ◽  
Morphological Characters ◽  
Molecular Data ◽  
Morphological Data ◽  
Long Distance ◽  
Aegean Islands ◽  
Molecular Phylogenetic

AbstractThe eastern Mediterranean basin hosts a remarkably high plant diversity. Historical connections between currently isolated areas across the Aegean region and long-distance dispersal events have been invoked to explain current distribution patterns of species. According to most recent treatments, at least two Cymbalaria species occur in this area, Cymbalaria microcalyx and C. longipes. The former comprises several intraspecific taxa, treated at different ranks by different authors based on morphological data, evidencing the need of a taxonomic revision. Additionally, some populations of C. microcalyx show exclusive morphological characters that do not match any described taxon. Here, we aim to shed light on the systematics of eastern Mediterranean Cymbalaria and to propose a classification informed by various sources of evidence. We performed molecular phylogenetic analyses using ITS, 3’ETS, ndhF and rpl32-trnL sequences and estimated the ploidy level of some taxa performing relative genome size measures. Molecular data combined with morphology support the division of traditionally delimited C. microcalyx into C. acutiloba, C. microcalyx and C. minor, corresponding to well-delimited nrDNA lineages. Furthermore, we propose to combine C. microcalyx subsp. paradoxa at the species level. A group of specimens previously thought to belong to Cymbalaria microcalyx constitute a well-defined phylogenetic and morphological entity and are described here as a new species, Cymbalaria spetae. Cymbalaria longipes is non-monophyletic, but characterized by being glabrous and diploid, unlike other eastern species. The nrDNA data suggest at least two dispersals from the mainland to the Aegean Islands, potentially facilitated by marine regressions.

Tracing the origins of hybrids through history: monstrous cultivars and Napoléon Bonaparte’s exiled paper daisies (Asteraceae; Gnaphalieae)

2021 ◽  
Author(s):  
Timothy L Collins ◽  
Jeremy J Bruhl ◽  
Alexander N Schmidt-Lebuhn ◽  
Ian R H Telford ◽  
Rose L Andrew
Keyword(s):  
Gene Flow ◽  
Phylogenetic Analyses ◽  
Strong Support ◽  
Napoleon Bonaparte ◽  
Snp Data ◽  
Cast Doubt ◽  
Molecular Phylogenetic ◽  
St Helena ◽  
New Evidence

Abstract Golden everlasting paper daisies (Xerochrysum, Gnaphalieae, Asteraceae) were some of the earliest Australian native plants to be cultivated in Europe. Reputedly a favourite of Napoléon Bonaparte and Empress Joséphine, X. bracteatum is thought to have been introduced to the island of St Helena in the South Atlantic during Napoléon’s exile there. Colourful cultivars were developed in the 1850s, and there is a widely held view that these were produced by crossing Xerochrysum with African or Asian Helichrysum spp. Recent molecular phylogenetic analyses and subtribal classification of Gnaphalieae cast doubt on this idea. Using single-nucleotide polymorphism (SNP) data, we looked for evidence of gene flow between modern cultivars, naturalized paper daisies from St Helena and four Xerochrysum spp. recorded in Europe in the 1800s. There was strong support for gene flow between cultivars and X. macranthum. Paper daisies from St Helena were genotypically congruent with X. bracteatum and showed no indications of ancestry from other species or from the cultivars, consistent with the continuous occurrence of naturalized paper daisies introduced by Joséphine and Napoléon. We also present new evidence for the origin of colourful Xerochrysum cultivars and hybridization of congeners in Europe from Australian collections.

scholarly journals Noteworthy record of the Ethiopian genet, Genetta abyssinica, (Carnivora, Viverridae) from Djibouti informs its phylogenetic position within Genetta

Mammalia ◽  
2019 ◽  
Vol 83 (2) ◽  
pp. 180-189 ◽  
Author(s):  
Adam W. Ferguson ◽  
Houssein R. Roble ◽  
Molly M. McDonough
Keyword(s):  
Phylogenetic Relationships ◽  
Sequence Data ◽  
Alternative Hypothesis ◽  
Phylogenetic Analyses ◽  
Phylogenetic Position ◽  
Sister Relationship ◽  
Molecular Sequence Data ◽  
Molecular Sequence ◽  
Molecular Phylogenetic ◽  
Relationship Of

AbstractThe molecular phylogeny of extant genets (Carnivora, Viverridae,Genetta) was generated using all species with the exception of the Ethiopian genetGenetta abyssinica. Herein, we provide the first molecular phylogenetic assessment ofG. abyssinicausing molecular sequence data from multiple mitochondrial genes generated from a recent record of this species from the Forêt du Day (the Day Forest) in Djibouti. This record represents the first verified museum specimen ofG. abyssinicacollected in over 60 years and the first specimen with a specific locality for the country of Djibouti. Multiple phylogenetic analyses revealed conflicting results as to the exact relationship ofG. abyssinicato otherGenettaspecies, providing statistical support for a sister relationship to all other extant genets for only a subset of mitochondrial analyses. Despite the inclusion of this species for the first time, phylogenetic relationships amongGenettaspecies remain unclear, with limited nodal support for many species. In addition to providing an alternative hypothesis of the phylogenetic relationships among extant genets, this recent record provides the first complete skeleton of this species to our knowledge and helps to shed light on the distribution and habitat use of this understudied African small carnivore.

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