scholarly journals What can be Concluded from COI Gene Data in Limited History Specimen: A sample analysis of a forest pest,Lymantria dispar

2019 ◽  
Vol 3 ◽  
Author(s):  
Hongbin Wang ◽  
Yao Xu ◽  
Guohong Li
Keyword(s):  
Genetic Differentiation ◽  
Gypsy Moth ◽  
Lymantria Dispar ◽  
Genetic Relationships ◽  
Full Length ◽  
Coi Gene ◽  
Current Status ◽  
Pest Species ◽  
Forest Pest ◽  
Gene Sequences

Nowadays, more and more biodiversity and biogeography studies are conducted with the help of gene sequences. Fresh samples obtained using consistent collection methods can provide DNA for analysis and yield the current status of target species. As there are often no historical samples providing a timescale, it is often difficult to draw conclusions and to provide an evolutionary explanation of the observed biogeographical patterns because of a lack of evidence. The huge natural history specimen collections in museums could possibly provide this information. The gypsy moth, Lymantria dispar (Linnaeus) is a worldwide forest pest species. Our analyses of mitochondrial COI gene sequencing data in specimens from disparate locations revealed previously unknown genetic relationships in gypsy moth populations across space (in and around China) and time (1955–2012). We recovered 103 full-length COI gene sequences from eight fresh samples and from 95 Lymantria dispar collection specimens that had been captured between 1955 and 1996. Combining 103 full-length COI gene sequences with 146 COI gene sequences from Genbank (https://www.ncbi.nlm.nih.gov) or DNA barcode libraries, we analyzed the genetic differentiation, gene flow and haplotypes (special sequences from individuals) within the gypsy moth populations in order to reflect the genetic structure and population dynamics of this pest. Twenty-five previously unknown haplotypes were discovered. Regional populations from the same location, but collected at different times, showed high genetic diversity. In some geographical populations (Heilongjiang, Liaoning and Beijing populations), the genetic differentiation was greatest in 1979, but much lower in 1992 and 2012. This study is an example that shows how specimen collections can be useful to complete gaps in biodiversity studies carried out through genetic sequencing.

scholarly journals Mitochondrial Gene Sequence (COI) Reveals the Genetic Structure and Demographic History of Lymantria dispar (Lepidoptera: Erebidae: Lymantriinae) in and around China

Insects ◽  
2019 ◽  
Vol 10 (5) ◽  
pp. 146 ◽  
Author(s):  
Yao Xu ◽  
Sufang Zhang ◽  
Hongbin Wang ◽  
Mei Wang ◽  
Guohong Li
Keyword(s):  
Genetic Structure ◽  
Gypsy Moth ◽  
Lymantria Dispar ◽  
Demographic History ◽  
Mitochondrial Gene ◽  
Dna Barcode ◽  
Full Length ◽  
Coi Gene ◽  
Gene Sequences ◽  
Gypsy Moths

The gypsy moth, Lymantria dispar, is among the most destructive quarantine pests of forests. Here, we reconstructed the genetic structure and determined the population differentiation of gypsy moths across its distribution range at different times. This information could be used to both improve the prevention and detection of gypsy moths in the field. Using 31 newly designed species-specific primers targeting fragments of 216–1102 bp, we identified 103 full-length cytochrome oxidase subunit I (COI) gene sequences from eight fresh samples and 95 L. dispar specimens collected between 1955 and 1996, mainly in China. Combining 103 full-length COI gene sequences with 146 COI gene sequences from Genbank or DNA barcode libraries, we analyzed the genetic differentiation, gene flow and haplotypes between gypsy moth populations in order to reflect the genetic structure and population dynamics of gypsy moths. We discovered 25 previously unknown haplotypes from old gypsy moth specimens. We found that the genetic diversity among gypsy moth populations (collected in the same region at different time points) was relatively high. Furthermore, the genetic structure of Chinese geographical populations (Heilongjiang, Liaoning, Beijing) in different years was distinct. Our results suggested that some gypsy moths in China showed the genetic affinity with European gypsy moths (a sub-species of gypsy moths found mainly in Europe).

scholarly journals Bovine Coronavirus Infections in Turkey: Molecular Analysis of the Full-Length Spike Gene Sequences of Viruses From Digestive and Respiratory Infections

2021 ◽  
Author(s):  
Secil Sevinc Temizkan ◽  
Feray Alkan
Keyword(s):  
Amino Acid ◽  
Genetic Relationships ◽  
Full Length ◽  
N Gene ◽  
Nasal Discharge ◽  
Gene Sequences ◽  
Bovine Coronavirus ◽  
Positive Effects ◽  
S Gene ◽  
Pcr Targeting

Abstract BCoV can be spread by animal activity. Despite the widespread cattle farming in the region, limited studies exist in Turkey about BCoV. The aim of this study was to reveal the latest aspects in Turkey about BCoV and evaluate the data. This is the first study reporting the full-length sequences of S genes of BCoV in Turkey.In this study samples were collected from 119 cattle, presenting clinical signs of respiratory (n=78) or digestive tract infection (n=41) in distinctive farms located in widely different provinces of Turkey. Samples were screened for bovine coronavirus (BCoV) by a RT-nested PCR targeting the N gene. BCoV was found positive in 35 samples (9 faeces and 26 nasal discharge) and RT-PCR analysis of the S gene was performed. The partial/full-length S gene sequences were able to be obtained from 11 samples (8 faeces and 3 nasal discharge). Phylogenetic tree of the S gene sequences was analyzed for the genetic relationships among BCoVs from Turkey and other countries. Results showed that many different amino acid changes exist in local strains and these changes were persistent in faeces and nasal discharge origin. Likewise, some nucleotide and amino acid changes were compatible with previous studies which have critical importance for tropism. These results could represent a novelty in the current literature adding new data on BCoV from Turkey and these data could have potentially positive effects on the vaccination approach and control strategies due to lack of information.

scholarly journals Integrative Taxonomy and Molecular Phylogeny of the Plant-Parasitic Nematode Genus Paratylenchus (Nematoda: Paratylenchinae): Linking Species with Molecular Barcodes

Plants ◽  
2021 ◽  
Vol 10 (2) ◽  
pp. 408
Author(s):  
Phougeishangbam Rolish Singh ◽  
Gerrit Karssen ◽  
Marjolein Couvreur ◽  
Sergei A. Subbotin ◽  
Wim Bert
Keyword(s):  
18S Rrna ◽  
Parasitic Nematode ◽  
Integrative Taxonomy ◽  
Coi Gene ◽  
Integrated Analysis ◽  
Gene Sequences ◽  
Unknown Species ◽  
New Gene ◽  
First Time ◽  
Plant Parasitic

Pin nematodes of the genus Paratylenchus are obligate ectoparasites of a wide variety of plants that are distributed worldwide. In this study, individual morphologically vouchered nematode specimens of fourteen Paratylenchus species, including P. aculentus, P. elachistus, P. goodeyi, P. holdemani, P. idalimus, P. microdorus, P. nanus, P. neoamblycephalus, P. straeleni and P. veruculatus, are unequivocally linked to the D2-D3 of 28S, ITS, 18S rRNA and COI gene sequences. Combined with scanning electron microscopy and a molecular analysis of an additional nine known and thirteen unknown species originating from diverse geographic regions, a total of 92 D2-D3 of 28S, 41 ITS, 57 18S rRNA and 111 COI new gene sequences are presented. Paratylenchus elachistus, P. holdemani and P. neoamblycephalus are recorded for the first time in Belgium and P. idalimus for the first time in Europe. Paratylenchus is an excellent example of an incredibly diverse yet morphologically minimalistic plant-parasitic genus, and this study provides an integrated analysis of all available data, including coalescence-based molecular species delimitation, resulting in an updated Paratylenchus phylogeny and the corrective reassignment of 18 D2-D3 of 28S, 3 ITS, 3 18S rRNA and 25 COI gene sequences that were previously unidentified or incorrectly classified.

BIOLOGICAL IDENTIFICATION OF EUDISTOMA SPECIES (POLYCITORIDAE: ASCIDIACEA) FROM GULF OF MANNAR, INDIA THROUGH COI GENE SEQUENCES

Gene Reports ◽  
2021 ◽  
pp. 101222
Author(s):  
H. Abdul Jaffar Ali ◽  
M.L. Mohammed Kaleem Arshan ◽  
L.K. Praba ◽  
B. Kaleemullah Khan
Keyword(s):  
Coi Gene ◽  
Gulf Of Mannar ◽  
Gene Sequences ◽  
Biological Identification

Stimulation of cyclic AMP formation and nerve electrical activity by octopamine in the terminal abdominal ganglion of the female gypsy moth Lymantria dispar

2006 ◽  
Vol 1071 (1) ◽  
pp. 63-74 ◽  
Author(s):  
Maria C. Olianas ◽  
Paolo Solari ◽  
Luciana Garau ◽  
Anna Liscia ◽  
Roberto Crnjar ◽  
...  
Keyword(s):  
Cyclic Amp ◽  
Electrical Activity ◽  
Gypsy Moth ◽  
Lymantria Dispar ◽  
Abdominal Ganglion ◽  
Stimulation Of
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