scholarly journals Sharing Species Pages in the Atlas of Living Costa Rica using Plinian Core

Author(s):  
Manuel Vargas ◽  
María Mora Cross ◽  
José Cuadra ◽  
William Ulate Rodríguez

The Atlas of Living Costa Rica (www.crbio.cr) is a biodiversity data portal based on the Atlas of Living Australia (ALA) and managed by the Biodiversity Informatics Research Center (CRBio) and the National Biodiversity Institute of Costa Rica (INBio). It currently shares nearly eight million occurrence records and more than 5000 species pages about Costa Rican vertebrates, arthropods, molluscs, nematodes, plants, and fungi. These pages contain information elements pertaining to, for instance, morphological descriptions, distribution, habitat, conservation status, management, nomenclature, and multimedia (Vargas et al. 2018). In order to fully integrate species pages into the ALA architecture, CRBio is working in the adoption of the Biodiversity Information Explorer (BIE), an ALA module which manages taxonomic and species contents by integrating global resources like EOL or Wikipedia. This adoption includes the required modifications to use the data model of the Plinian Core (https://github.com/tdwg/PlinianCore), a TDWG draft standard registered as an IPT extension, oriented to share species level information from local and regional sources too (Pando 2018). The advancement of Plinian Core has been lead by INBio, the Spanish Node of GBIF (GBIF Spain), the University of Granada (UG, Spain), the Alexander von Humboldt Institute (IAvH, Colombia), the National Commission for the Knowledge and Use of Biodiversity (Conabio, Mexico) and the University of Sao Paulo (USP, Brazil). This group reviewed the existing data standards to reuse as many elements as possible and avoid redundancy. Besides the aforementioned, Plinian Core is currently used by other institutions like the Chilean Ministry of Environment. Plinian Core was designed to be easy to use, self-contained, able to support data integration from multiple databases, and having the ability to handle different levels of granularity. These requirements are the result of actual needs from content creators that, through an iterative process, have yielded a more complete and flexible exchange standard to aggregate biological and non-biological species information, used by others like IBIN, the Indian Bioresource Information Network (Saran et al. 2018). Plinian Core aims to be a component in producing multiple species catalogues developed under specific constraints to serve specific purposes, instead of focusing on a unified platform while facilitating consistent aggregation and re-utilization of information (GBIF.org 2015). We will present our implementation of the BIE module in the Atlas of Living Costa Rica, following the documented best practices when sharing species level information using Plinian Core. Our demonstration will detail our lessons learned from merging the aforementioned 5000 species pages provided by INBio with several thousand of species pages assembled from the information provided by the World Flora Online through the aggregation of different Flora resources, like Manual de Plantas de Costa Rica (Hammel et al. 2003) that provides 5,000 plants descriptions and 350 vernacular names (http://www.worldfloraonline.org/resource?query=Manual+de+Plantas+de+Costa+Rica).

2018 ◽  
Author(s):  
Bernal Morera-Brenes ◽  
Julian Monge-Najera ◽  
Paola Carrera-Mora

Charismatic species, like the panda, play an important role in conservation, and velvet worms arguably are charismatic worms. Thanks to their extraordinary hunting mechanism, they have inspired from a female metal band in Japan, to origami worms in Russia and video game monsters in the USA. Objective: To assess their conservation status in Costa Rica. Methods: we located all collection records of the 29 known species from the Onychophora Database in the map of the Costa Rican Conservation Network. Results: We found that seven species are protected inside forest reserves, five in Protected Zones, four in Wildlife Refuges, two in National Parks and one, Principapillatus hitoyensis, in a strictly pristine Biological Reserve. The largest species in the world, Peripatus solorzanoi, occurs both inside a Forest Reserve and in protected private land. Protection inside Costa Rican nature areas is enforced year round by personnel that includes armed guards, and is supported by educational programs in surrounding communities. Twelve species have not been found in protected areas, but in Costa Rica, all biological species, named and unnamed, are protected by law and cannot be legally collected, or exported, without technically issued permits. Conclusion: Like in the only other country with similar information (New Zealand), the conservation of onychophorans seems to be of least concern for at least two thirds of the known species. Epiperipatus isthmicola, recently rediscovered after a century of absence in collections, can be considered Threatened because nearly all of its natural habitat has now been covered by a city.


2018 ◽  
Vol 2 ◽  
pp. e25990 ◽  
Author(s):  
Manuel Vargas ◽  
María Mora ◽  
William Ulate ◽  
José Cuadra

The Atlas of Living Costa Rica (http://www.crbio.cr/) is a biodiversity data portal, based on the Atlas of Living Australia (ALA), which provides integrated, free, and open access to data and information about Costa Rican biodiversity in order to support science, education, and conservation. It is managed by the Biodiversity Informatics Research Center (CRBio) and the National Biodiversity Institute (INBio). Currently, the Atlas of Living Costa Rica includes nearly 8 million georeferenced species occurrence records, mediated by the Global Biodiversity Information Facility (GBIF), which come from more than 900 databases and have been published by research centers in 36 countries. Half of those records are published by Costa Rican institutions. In addition, CRBio is making a special effort to enrich and share more than 5000 species pages, developed by INBio, about Costa Rican vertebrates, arthropods, molluscs, nematodes, plants and fungi. These pages contain information elements pertaining to, for instance, morphological descriptions, distribution, habitat, conservation status, management, nomenclature and multimedia. This effort is aligned with collaboration established by Costa Rica with other countries such as Spain, Mexico, Colombia and Brazil to standarize this type of information through Plinian Core (https://github.com/PlinianCore), a set of vocabulary terms that can be used to describe different aspects of biological species. The Biodiversity Information Explorer (BIE) is one of the modules made available by ALA which indexes taxonomic and species content and provides a search interface for it. We will present how CRBio is implementing BIE as part of the Atlas of Living Costa Rica in order to share all the information elements contained in the Costa Rican species pages.


Author(s):  
Bernal Morera ◽  
Julian Monge-Najera ◽  
Paola Carrera Mora

ABSTRACT: Charismatic species, like the panda, play an important role in conservation, and velvet worms arguably are charismatic worms. Thanks to their extraordinary hunting mechanism, they have inspired from a female metal band in Japan, to origami worms in Russia and video game monsters in the USA. Objective: To assess their conservation status in Costa Rica. Methods: we located all collection records of the 29 known species from the Onychophora Database in the map of the Costa Rican Conservation Network. Results: We found that seven species are protected inside forest reserves, five in Protected Zones, four in Wildlife Refuges, two in National Parks and one, Principapillatus hitoyensis, in a strictly pristine Biological Reserve. The largest species in the world, Peripatus solorzanoi, occurs both inside a Forest Reserve and in protected private land. Protection inside Costa Rican nature areas is enforced year round by personnel that includes armed guards, and is supported by educational programs in surrounding communities. Twelve species have not been found in protected areas, but in Costa Rica, all biological species, named and unnamed, are protected by law and cannot be legally collected, or exported, without technically issued permits. Conclusion: Like in the only other country with similar information (New Zealand), the conservation of onychophorans seems to be of least concern for at least two thirds of the known species. Epiperipatus isthmicola, recently rediscovered after a century of absence in collections, can be considered Threatened because nearly all of its natural habitat has now been covered by a city.


Phytotaxa ◽  
2020 ◽  
Vol 467 (1) ◽  
pp. 1-61
Author(s):  
ORLANDO O. ORTIZ ◽  
THOMAS B. CROAT ◽  
ROBERT HORMELL ◽  
MARCO CEDEÑO-FONSECA

In the present paper, we include the description of 31 new species from Guatemala, Costa Rica and Panama (including one from the Panama-Colombia border), which are distributed in eight sections. The sections represented and the number of species per section are as follows: Andiphilum (two), Belolonchium (five), Calomystrium (five), Cardiolonchium (eight), Decurrentia (one), Pachyneurium (eight), Polyneurium (one) and Tetraspermium (one). Additionally, three Central American taxa are now considered to be distinct at the species level and are here elevated to specific rank; Anthurium arcuatum, A. fogdeniorum, and A. copense. Notes on habitat, conservation status, taxonomy and morphology are provided for each species as well as illustrations.


2021 ◽  
Vol 13 (4) ◽  
pp. 1739
Author(s):  
Paul Save ◽  
Belgin Terim Cavka ◽  
Thomas Froese

Any group that creates challenging goals also requires a strategy to achieve them and a process to review and improve this strategy over time. The University of British Columbia (UBC) set ambitious campus sustainability goals, including a reduction in its greenhouse gas emissions to 33% below the 2007 level by 2015, and 100% by 2050 (UBC, 2006). The University pursued these goals through a number of specific projects (such as major district energy upgrade and a bioenergy facility) and, more generally, through a “Campus as a Living Lab” (CLL) initiative to marry industry, campus operations, and research to drive innovative solutions. The CLL program has achieved significant successes while also demonstrating many opportunities for improvements and lessons learned. The aim of this study was to examine the UBC CLL program, to identify and formalize its operations, to extract key transferable characteristics, and to propose replicable processes that other universities and municipalities can follow to expand their sustainable practices in similar ways. There was a learning curve with implementing a CLL program at UBC; thus, the goal of this study was to potentially shorten this learning curve for others. The research involved an ethnographic approach in which researchers participated in the CLL process, conducted qualitative analysis, and captured the processes through a series of business process models. The research findings are shared in two parts: 1. generalized lessons learned through key transferrable characteristics; 2. a series of generic organizational charts and business process models (BPMs) culminated with learned strategies through defined processes that illustrate what was required to create a CLL program at UBC. A generalized future improvement plan for UBC CLL programs is defined, generic BPMs about CLL projects are evaluated, and the level of engagement of multiple stakeholders through phases of project life cycle given in the conclusion for future use of other Living Lab organizations.


Collections ◽  
2021 ◽  
pp. 155019062098784
Author(s):  
Whitney Baker

In 2018, the University of Kansas (KU) Libraries upgraded from a tired, twenty-year-old basement space to a new, purpose-built conservation lab for library and archives collections. The new conservation lab, which is housed in the special collections and archives library, quadrupled available lab space for its conservators and fleet of student employees. The move afforded Conservation space in the same library as the most vulnerable collection materials. In addition, rooms in the special collections and archives library were repurposed for audiovisual (AV) preservation, creating two new spaces for film and video workflows and upgrading an existing small audio room. This paper will discuss the conservation and preservation lab construction literature and will serve as a practical exemplar of the challenges and successes of the planning process, including lessons learned and unexpected benefits.


2015 ◽  
Vol 31 (2) ◽  
pp. 76-86 ◽  
Author(s):  
Somaly Kim Wu ◽  
Heather McCullough

Purpose – The purpose of this paper is to presents the very recent development of e-journal publishing services at the University of North Carolina (UNC) at Charlotte. In 2011, the J. Murrey Atkins Library at UNC Charlotte created a new unit in the library, the Digital Scholarship Lab (DSL), which partners with faculty and graduate students in the use of digital and networked research tools to create, disseminate and store new knowledge. E-journal publishing and hosting are among the suite of services offered by the DSL, and we currently publish three journals (https://journals.uncc.edu/). Design/methodology/approach – This report provides an overview of the context of our library’s decision to begin publishing journals, including a discussion of our university’s becoming more research-intensive, our university system mandating increased efficiencies and sharing research with the state citizens, and the library’s own goals of raising awareness of and supporting open access. Also outlined are the technical and procedural choices made, important activities undertaken to develop, define and publicize the new services, campus response to the service and next steps. Findings – This report provides detailed accounting of how a large academic library implemented an electronic publishing service to support open access scholarship. Important activities such as marketing communication, policies development and technical/procedural activities are defined and results described. The report provides observation and lessons learned for academic libraries in development and support of electronic journals. Originality/value – Library as the publisher is a new concept. This report will be of interest to many libraries who are considering offering publishing services and to libraries that currently offer publishing services.


2018 ◽  
Vol 34 (1) ◽  
pp. 20-31
Author(s):  
Rose Sliger Krause ◽  
Andrea Langhurst Eickholt ◽  
Justin L. Otto

Purpose The purpose of this paper is to describe the music performance collection preserved in Eastern Washington University’s institutional repository (IR). This collection of recordings of student music performances is the result of an ongoing collaboration between the university?s library and music department, which serves to provide discoverability, preservation and access to a collection of student creative works, which had heretofore been a hidden collection. Design/methodology/approach This collection of student creative work was identified as a suitable project for the Eastern Washington University’s IR while it was still in the planning stages because it was identified as an existing need that the new IR could address. Much of the groundwork for the collaboration between the library and music department was completed prior to IR implementation. Thus, the library was ready to begin work on this collection once the IR was operational. Findings The student music performance collection has been a successful project for the IR, which benefits the music department by making student performances discoverable and accessible, and benefits the library by providing the opportunity to demonstrate that the then-new IR could support the university’s student-centered focus on teaching and learning. Originality/value While there is a growing body of literature on IRs emphasizing student work, there is little literature on music or other creative works’ collections in IRs, much less on creative works by students. This paper adds to the limited body of literature on student creative works in the IR by describing the development, implementation and lessons learned from the successful music performances collection.


Author(s):  
Alexandra Hain ◽  
Arash E. Zaghi

Corrosion at steel beam ends is one of the most pressing challenges in the maintenance of aging bridges. To tackle this challenge, the Connecticut Department of Transportation (DOT) has partnered with the University of Connecticut to develop a repair method that benefits from the superior mechanical and durability characteristics of ultra-high performance concrete (UHPC) material. The repair involves welding shear studs to the intact portions of the web and encasing the beam end with UHPC. This provides an alternate load path for bearing forces that bypasses the corroded regions of the beam. The structural viability of the repair has been extensively proven through small- and full-scale experiments and comprehensive finite element simulations. Connecticut DOT implemented the repair for the first time in the field on a heavily trafficked four-span bridge in 2019. The UHPC beam end repair was chosen because of the access constraints and geometric complexities of the bridge that limited the viable repair options. Four of the repaired beam ends were fully instrumented to collect data on the performance of the repaired locations before casting, during curing, and for approximately 6 months following the application of the repair. This paper provides an overview of the successful repair implementation and presents the lessons learned during construction. Select data from the monitored beam ends are presented. It is expected that this information will provide engineers with a better understanding of the repair implementation process, and thus provide an additional repair option for states to enhance the safety of aging steel bridges.


2014 ◽  
Vol 15 (2) ◽  
pp. 157-168 ◽  
Author(s):  
Leanne Bilodeau ◽  
Jackie Podger ◽  
Alaa Abd-El-Aziz

Purpose – Universities can provide a leadership role to develop and mobilize knowledge to meet societal needs. In fulfilling this mission, universities can also serve as agents of sustainable development on campus and in communities they serve. The purpose of this article is to describe the drivers that have advanced the University of British Columbia Okanagan campus' operational and academic sustainability objectives; the initiatives and partnerships developed on campus and in the community in response to these drivers; and the outcomes and lessons learned. Design/methodology/approach – This article summarizes the experience of the University of British Columbia Okanagan campus in leveraging key drivers to develop sustainability initiatives and partnerships for greater operational efficiencies, cost savings, environmental stewardship and applied research. The university's leadership commitment to sustainability, economic opportunities and provincial legislative requirements are among the drivers discussed. This paper also provides an innovative partnership framework to support sustainable community development. Findings – Drivers of sustainability in higher education can contribute to the development of sustainability initiatives and partnerships that benefit institutions and communities and achieve operational and academic sustainability mandates. Practical implications – This article provides information that can be applied by institutions of higher education to advance sustainability within the context of current economic conditions and societal needs. Originality/value – The experience of the campus and the partnership framework presented in this paper is original. The framework provides a mechanism to engage students, faculty and the community in sustainable community development research. Key insights from multiple perspectives and lessons learned are shared.


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