scholarly journals REBIOMA Data Portal, Tool for Conservation Planning in Madagascar

2018 ◽  
Vol 2 ◽  
pp. e25864
Author(s):  
Rabetrano Tsiky
Keyword(s):  
Species Distribution ◽  
Conservation Planning ◽  
Species Distribution Models ◽  
Continuous Distribution ◽  
Environmental Data ◽  
Easy Access ◽  
Species Occurrence ◽  
Distribution Models ◽  
Occurrence Data ◽  
Data Portal

Recognizing the abundance and the accumulation of information and data on biodiversity that are still poorly exploited and even unfunded, the REBIOMA project (Madagascar Biodiversity Networking), in collaboration with partners, has developed an online dataportal in order to provide easy access to information and critical data, to support conservation planning and the expansion of scientific and professional activities in Madagascar biodiversity. The mission of the REBIOMA data portal is to serve quality-labeled, up-to-date species occurrence data and environmental niche models for Madagascar’s flora and fauna, both marine and terrestrial. REBIOMA is a project of the Wildlife Conservation Society Madagascar and the University of California, Berkeley. REBIOMA serves species occurrence data for marine and terrestrial regions of Madagascar. Following upload, data is automatically validated against a geographic mask and a taxonomic authority. Data providers can decide whether their data will be public, private, or shared only with selected collaborators. Data reviewers can add quality labels to individual records, allowing selection of data for modeling and conservation assessments according to quality. Portal users can query data in numerous ways. One of the key features of the REBIOMA web portal is its support for species distribution models, created from taxonomically valid and quality-reviewed occurrence data. Species distribution models are produced for species for which there are at least eight, reliably reviewed, non-duplicate (per grid cell) records. Maximum Entropy Modeling (MaxEnt for short) is used to produce continuous distribution models from these occurrence records and environmental data for different eras: past (1950), current (2000), and future (2080). The result is generally interpreted as a prediction of habitat suitability. Results for each model are available on the portal and ready for download as ASCII and HTML files. The REBIOMA Data Portal address is http://data.rebioma.net, or visit http://www.rebioma.netfor more general information about the entire REBIOMA project.

scholarly journals BioModelos: a collaborative online system to map species distributions

2018 ◽  
Author(s):  
Jorge Velásquez-Tibatá ◽  
María H. Olaya-Rodríguez ◽  
Daniel López-Lozano ◽  
César Gutiérrez ◽  
Iván González ◽  
...  
Keyword(s):  
Species Distribution ◽  
Species Distribution Models ◽  
National Level ◽  
Species Distribution Modeling ◽  
Risk Assessments ◽  
Species Occurrence ◽  
Distribution Models ◽  
Online System ◽  
Occurrence Data

AbstractInformation on species distribution is recognized as a crucial input for biodiversity conservation and management. To that end, considerable resources have been dedicated towards increasing the quantity and availability of species occurrence data, boosting their use in species distribution modeling and online platforms for their dissemination. Currently, those platforms face the challenge of bringing biology into modeling by making informed decisions that result in meaningful models. Here we describe BioModelos, a modeling approach supported by an online system and a core team, whereby a network of experts contributes to the development of species distribution models by assessing the quality of occurrence data, identifying potentially limiting environmental variables, establishing species’ accessible areas and validating qualitatively modeling predictions. Models developed through BioModelos become publicly available once validated by experts, furthering their use in conservation applications. This approach has been implemented in Colombia since 2013 and it currently consist of a network of nearly 500 experts that collaboratively contribute to enhance the knowledge on the distribution of a growing number of species and where it has aided the development of several decision support products such as national risk assessments and biodiversity compensation manuals. BioModelos is an example of operationalization of an essential biodiversity variable at a national level through the implementation of a research infrastructure that enhances the value of open access species data.

scholarly journals A Robust Prediction Model for Species Distribution Using Bagging Ensembles with Deep Neural Networks

2021 ◽  
Vol 13 (8) ◽  
pp. 1495
Author(s):  
Jehyeok Rew ◽  
Yongjang Cho ◽  
Eenjun Hwang
Keyword(s):  
Neural Networks ◽  
Species Distribution ◽  
Best Practice ◽  
Deep Neural Networks ◽  
Species Distribution Models ◽  
Species Distribution Model ◽  
Environmental Data ◽  
Distribution Model ◽  
Distribution Models ◽  
Robust Prediction

Species distribution models have been used for various purposes, such as conserving species, discovering potential habitats, and obtaining evolutionary insights by predicting species occurrence. Many statistical and machine-learning-based approaches have been proposed to construct effective species distribution models, but with limited success due to spatial biases in presences and imbalanced presence-absences. We propose a novel species distribution model to address these problems based on bootstrap aggregating (bagging) ensembles of deep neural networks (DNNs). We first generate bootstraps considering presence-absence data on spatial balance to alleviate the bias problem. Then we construct DNNs using environmental data from presence and absence locations, and finally combine these into an ensemble model using three voting methods to improve prediction accuracy. Extensive experiments verified the proposed model’s effectiveness for species in South Korea using crowdsourced observations that have spatial biases. The proposed model achieved more accurate and robust prediction results than the current best practice models.

Very high resolution environmental predictors in species distribution models

2013 ◽  
Vol 38 (1) ◽  
pp. 79-96 ◽  
Author(s):  
Jean-Nicolas Pradervand ◽  
Anne Dubuis ◽  
Loïc Pellissier ◽  
Antoine Guisan ◽  
Christophe Randin
Keyword(s):  
High Resolution ◽  
Species Distribution ◽  
Species Distribution Models ◽  
Environmental Data ◽  
Swiss Alps ◽  
Fine Scale ◽  
Distribution Models ◽  
Model Quality ◽  
Vegetation Height ◽  
Very High

Recent advances in remote sensing technologies have facilitated the generation of very high resolution (VHR) environmental data. Exploratory studies suggested that, if used in species distribution models (SDMs), these data should enable modelling species’ micro-habitats and allow improving predictions for fine-scale biodiversity management. In the present study, we tested the influence, in SDMs, of predictors derived from a VHR digital elevation model (DEM) by comparing the predictive power of models for 239 plant species and their assemblages fitted at six different resolutions in the Swiss Alps. We also tested whether changes of the model quality for a species is related to its functional and ecological characteristics. Refining the resolution only contributed to slight improvement of the models for more than half of the examined species, with the best results obtained at 5 m, but no significant improvement was observed, on average, across all species. Contrary to our expectations, we could not consistently correlate the changes in model performance with species characteristics such as vegetation height. Temperature, the most important variable in the SDMs across the different resolutions, did not contribute any substantial improvement. Our results suggest that improving resolution of topographic data only is not sufficient to improve SDM predictions – and therefore local management – compared to previously used resolutions (here 25 and 100 m). More effort should be dedicated now to conduct finer-scale in-situ environmental measurements (e.g. for temperature, moisture, snow) to obtain improved environmental measurements for fine-scale species mapping and management.

scholarly journals Using LiDAR-derived vegetation metrics for high-resolution, species distribution models for conservation planning

Ecosphere ◽  
2013 ◽  
Vol 4 (3) ◽  
pp. art42 ◽  
Author(s):  
S. L. Farrell ◽  
B. A. Collier ◽  
K. L. Skow ◽  
A. M. Long ◽  
A. J. Campomizzi ◽  
...  
Keyword(s):  
High Resolution ◽  
Species Distribution ◽  
Conservation Planning ◽  
Species Distribution Models ◽  
Distribution Models

Overprediction of species distribution models in conservation planning: A still neglected issue with strong effects

2020 ◽  
Vol 252 ◽  
pp. 108822 ◽  
Author(s):  
Santiago José Elías Velazco ◽  
Bruno R. Ribeiro ◽  
Livia Maira Orlandi Laureto ◽  
Paulo De Marco Júnior
Keyword(s):  
Species Distribution ◽  
Conservation Planning ◽  
Species Distribution Models ◽  
Distribution Models

scholarly journals Predictive Ecosystem Mapping of South-Eastern Australian Temperate Forests Using Lidar-Derived Structural Profiles and Species Distribution Models

2019 ◽  
Vol 11 (1) ◽  
pp. 93 ◽  
Author(s):  
Melissa Fedrigo ◽  
Stephen B. Stewart ◽  
Stephen H. Roxburgh ◽  
Sabine Kasel ◽  
Lauren T. Bennett ◽  
...  
Keyword(s):  
Species Distribution ◽  
Vegetation Structure ◽  
Species Distribution Models ◽  
Sustainable Forest Management ◽  
Continuous Distribution ◽  
Forest Monitoring ◽  
Distribution Models ◽  
Study Region ◽  
South Eastern ◽  
Eastern Australia

Modern approaches to predictive ecosystem mapping (PEM) have not thoroughly explored the use of ‘characteristic’ gradients, which describe vegetation structure (e.g., light detection and ranging (lidar)-derived structural profiles). In this study, we apply a PEM approach by classifying the dominant stand types within the Central Highlands region of south-eastern Australia using both lidar and species distribution models (SDMs). Similarity percentages analysis (SIMPER) was applied to comprehensive floristic surveys to identify five species which best separated stand types. The predicted distributions of these species, modelled using random forests with environmental (i.e., climate, topography) and optical characteristic gradients (Landsat-derived seasonal fractional cover), provided an ecological basis for refining stand type classifications based only on lidar-derived structural profiles. The resulting PEM model represents the first continuous distribution map of stand types across the study region that delineates ecotone stands, which are seral communities comprised of species typical of both rainforest and eucalypt forests. The spatial variability of vegetation structure incorporated into the PEM model suggests that many stand types are not as continuous in cover as represented by current ecological vegetation class distributions that describe the region. Improved PEM models can facilitate sustainable forest management, enhanced forest monitoring, and informed decision making at landscape scales.

Examining Local Transferability of Predictive Species Distribution Models for Invasive Plants: An Example with Cogongrass (Imperata cylindrica)

2011 ◽  
Vol 4 (4) ◽  
pp. 390-401 ◽  
Author(s):  
Gary N. Ervin ◽  
D. Christopher Holly
Keyword(s):  
Invasive Species ◽  
Species Distribution ◽  
Species Distribution Models ◽  
Imperata Cylindrica ◽  
Environmental Data ◽  
Training Data ◽  
Distribution Data ◽  
Strongly Correlated ◽  
Distribution Models ◽  
Tree Canopy Cover

AbstractSpecies distribution modeling is a tool that is gaining widespread use in the projection of future distributions of invasive species and has important potential as a tool for monitoring invasive species spread. However, the transferability of models from one area to another has been inadequately investigated. This study aimed to determine the degree to which species distribution models (SDMs) for cogongrass, developed with distribution data from Mississippi (USA), could be applied to a similar area in neighboring Alabama. Cogongrass distribution data collected in Mississippi were used to train an SDM that was then tested for accuracy and transferability with cogongrass distribution data collected by a forest management company in Alabama. Analyses indicated the SDM had a relatively high predictive ability within the region of the training data but had poor transferability to the Alabama data. Analysis of the Alabama data, via independent SDM development, indicated that predicted cogongrass distribution in Alabama was more strongly correlated with soil variables than was the case in Mississippi, where the SDM was most strongly correlated with tree canopy cover. Results suggest that model transferability is influenced strongly by (1) data collection methods, (2) landscape context of the survey data, and (3) variations in qualitative aspects of environmental data used in model development.

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