scholarly journals A picture is worth a thousand words: using digital tools to visualise marine invertebrate diversity data along the coasts of Mozambique and São Tomé & Príncipe

2021 ◽  
Vol 9 ◽  
Author(s):  
Henrique Niza ◽  
Marta Bento ◽  
Luis Lopes ◽  
Alexandra Cartaxana ◽  
Alexandra Correia

The amount of biological data available in online repositories is increasing at an exponential rate. However, data on marine invertebrate biodiversity resources from Mozambique and São Tomé and Príncipe are still sparse and scattered. Online repositories are useful instruments for biodiversity research, as they provide a fast access to data from different sources. The use of interactive platforms comprising web mapping are becoming more important, not only for the scientific community, but also for conservation managers, decision-makers and the general public as they allow data presentation in simple and understandable visual schemes. The main goal of this study was to create an interactive online digital map (hosted and available at MARINBIODIV Atlas), through the collection of data from various sources, to visualise marine invertebrate occurrences and distribution across different habitats, namely mangroves, seagrasses, corals and other coastal areas, in Mozambique and São Tomé and Príncipe. The acquired biodiversity data were managed and structured to be displayed as spatial data and to be disseminated using the geographic information system ArcGIS, where data can be accessed, filtered and mapped. The ArcGIS web mapping design tools were used to produce interactive maps to visualise marine invertebrate diversity information along the coasts of Mozambique and São Tomé and Príncipe, through different habitats, offering the foundation for analysing species incidence and allocation information. Understanding the spatial occurrences and distribution of marine invertebrates in both countries can provide a valuable baseline, regarding information and trends on their coastal marine biodiversity.

2021 ◽  
Author(s):  
Henrique Niza ◽  
Marta Bento ◽  
Luis Lopes ◽  
Alexandra Cartaxana ◽  
Alexandra Correia

The amount of biological data available in online repositories is increasing at an exponential rate. However, data on marine invertebrate biodiversity resources are still sparse and scattered in these countries. Online repositories are useful instruments for biodiversity research, as they provide a fast access to data from different sources. The use of interactive platforms comprising web mapping are becoming more important not only for the scientific community, but also for conservation managers, decision-makers and the general public as they allow data presentation in simple and understandable visual schemes. The main goal of this study was to create an interactive online digital map (MARINBIODIV Atlas), through the collection of data from various sources, to visualize marine invertebrate occurrences and distribution across different habitats, namely mangroves, seagrasses, corals and other coastal areas, in Mozambique and São Tomé and Príncipe. The acquired biodiversity data were managed and structured to be displayed as spatial data and to be disseminated using the geographic information system ArcGIS, where data can be accessed, filtered and mapped. The ArcGIS web mapping design tools were used to produce interactive maps to visualize marine invertebrate diversity information along the coasts of Mozambique and São Tomé and Príncipe, through different habitats, offering the foundation for analysing species incidence and allocation information. Understanding the spatial occurrences and distribution of marine invertebrates in both countries can provide a valuable baseline, regarding information and trends on their coastal marine biodiversity.


Author(s):  
Marta Bento ◽  
Henrique Niza ◽  
Alexandra Cartaxana ◽  
Alexandra Marçal Correia

Natural history collections (NHC) worldwide contain vast amount of valuable data that can be used to answer a wide range of questions by exploring biodiversity and natural resources records, having an immense potential to contribute to science, policy making and legislating, and to public scientific awareness. Likewise, the development and increase of global and regional biodiversity digital databases (e.g., Global Biodiversity Information Facility - GBIF; Fauna Europaea; Naturdata, etc.), scientific literature and all digital information regarding biodiversity, ecological areas and climate records comprise a huge amount of primary and processed digital ecological data (DED) accessible globally that can be readily used, at no cost, and integrated to further study e.g. biodiversity changes, ecological processes, natural habitat distribution, prioritizing ecosystem management and conservation actions, etc. Marine invertebrate biodiversity contributes to the structure and stability of ecosystem processes such as productivity, ecological networks, as well as nutrient and biogeochemical cycling having also an economic importance as a food source for local populations. Mangroves and seagrasses encompass ecological and socio-economic relevance as they have a preponderant role in marine and coastal ecosystem biodiversity and functioning providing a vast number of goods and services to local populations. Although generally pristine, mangroves and seagrasses in Africa are extremely vulnerable to the increased migration of rural populations to urban coastal areas and to extreme climate events. As a result, human activities such as construction, agriculture and food harvesting, provoke habitat degradation and biodiversity loss which will have further devastating consequences. The degradation and unsustainable use of these ecosystems have major drawbacks to the elimination of extreme poverty because this is one of the key factors that drive environmental degradation and biodiversity loss. The main goal of this work is to use NHC and digital repositories data (including scientific literature) to assess how biodiversity loss and habitat degradation affect ecosystem functioning and services provided by marine invertebrate communities of mangroves and seagrass meadows in the West and East African coast, using the case study of Mozambique and Príncipe’s Island. These will lead to the construction of a comprehensive dataset, an ecological model and a framework adapted to marine invertebrate biodiversity from Mozambique’s (MZ) and São Tomé and Príncipe’s (STP) mangroves and seagrasses as tools:1) integrate and disseminate marine invertebrate biodiversity data gathered along a spatio-temporal scale; 2) compare marine invertebrate assemblies from pristine and impacted habitats in African countries and predict the progress of these communities to habitat degradation and biodiversity loss; and 3) manage ecosystem functioning and services delivered by marine invertebrate assemblages under anthropogenic and environmental pressure scenarios. Specifically this project intends to: compile and integrate the available information contained in NHC and DED to develop a comprehensive spatio-temporal dataset on marine invertebrate biodiversity (e.g. species, number of individuals, local of occurrence and georeferencing, date of collection/observation), as well as mangroves and seagrasses distribution along the Mozambique’s and Príncipe’s coasts; assess different indexes of invertebrate marine biodiversity, biodiversity and habitat spatio-temporal distribution; develop an ecological network approach to assess the functional links of marine invertebrate communities within the studied habitats, and to refine their role in ecosystem functioning, as well as ecosystem services (ES) provided by marine invertebrates in mangroves and seagrasses from MZ and STP; construct a model to evaluate the ecological responses of mangrove and seagrass invertebrate communities to habitat degradation and biodiversity loss and to predict multi-dimensional (spatial, temporal, and social) trade-offs in local/regional ecosystem services along a spatio-temporal gradient; develop a practical framework to manage and preserve ecosystem functioning and services delivered by mangrove and seagrass marine invertebrates under a global change scenario. compile and integrate the available information contained in NHC and DED to develop a comprehensive spatio-temporal dataset on marine invertebrate biodiversity (e.g. species, number of individuals, local of occurrence and georeferencing, date of collection/observation), as well as mangroves and seagrasses distribution along the Mozambique’s and Príncipe’s coasts; assess different indexes of invertebrate marine biodiversity, biodiversity and habitat spatio-temporal distribution; develop an ecological network approach to assess the functional links of marine invertebrate communities within the studied habitats, and to refine their role in ecosystem functioning, as well as ecosystem services (ES) provided by marine invertebrates in mangroves and seagrasses from MZ and STP; construct a model to evaluate the ecological responses of mangrove and seagrass invertebrate communities to habitat degradation and biodiversity loss and to predict multi-dimensional (spatial, temporal, and social) trade-offs in local/regional ecosystem services along a spatio-temporal gradient; develop a practical framework to manage and preserve ecosystem functioning and services delivered by mangrove and seagrass marine invertebrates under a global change scenario.


The Holocene ◽  
2018 ◽  
Vol 28 (12) ◽  
pp. 1894-1908
Author(s):  
Andréanne Bourgeois-Roy ◽  
Hugo Crites ◽  
Pascal Bernatchez ◽  
Denis Lacelle ◽  
André Martel

The late Pleistocene–early Holocene transition period was characterized by rapid environmental change. Here, we investigate the impact of these changes on the marine invertebrates living in a shallow inlet of the post-glacial Goldthwait Sea. The site is located near Baie-Comeau (QC, Canada), where a number of remarkably well-preserved shell deposits are found along the Rivière aux Anglais Valley on the north shore of the St. Lawrence maritime estuary. Seven phyla of marine invertebrates with a minimum of 25 species or taxa were inventoried in a shell deposit, dominated by a community of Hiatella arctica with Mytilus edulis and barnacles composing the subcommunity. The majority of taxa identified in the shell deposit are boreal and sub-Arctic species; however, temperate species that exist today in the St. Lawrence maritime estuary have not been found. Based on marine invertebrate diversity and δ18O(CaCO3) of Mytilus edulis, the water in the shallow inlet of the Goldthwait Sea must have been cold and saline. The range of AMS 14C ages from 15 Mytilus edulis, constrained to 10,900 and 10,690 cal. yr BP, and exceptional state of preservation of adult and juvenile molluscan specimens suggest the abrupt mortality of entire invertebrate communities due to changing hydrodynamic conditions that included the combined effect of freshwater discharge from the receding Laurentide Ice Sheet and rapid isostatic uplift.


2007 ◽  
Vol 76 (2) ◽  
pp. 103-120 ◽  
Author(s):  
Eleni Voultsiadou ◽  
Dimitris Vafidis

The aim of this paper is to bring to light Aristotle’s knowledge of marine invertebrate diversity as this has been recorded in his works 25 centuries ago, and set it against current knowledge. The analysis of information derived from a thorough study of his zoological writings revealed 866 records related to animals currently classified as marine invertebrates. These records corresponded to 94 different animal names or descriptive phrases which were assigned to 85 current marine invertebrate taxa, mostly (58%) at the species level. A detailed, annotated catalogue of all marine anhaima (a = without, haima = blood) appearing in Aristotle’s zoological works was constructed and several older confusions were clarified. Some of Aristotle’s “genera” were found to be directly correlated to current invertebrate higher taxa. Almost the total of the marine anhaima were benthic invertebrates. The great philosopher had a remarkable, well-balanced scientific knowledge of the diversity of the various invertebrate groups, very similar to that acquired by modern marine biologists in the same area of study. The results of the present study should be considered as a necessary starting point for a further analysis of Aristotle’s priceless contribution to the marine environment and its organisms.


Geology ◽  
2019 ◽  
Vol 48 (2) ◽  
pp. 118-122 ◽  
Author(s):  
Diego Balseiro ◽  
Matthew G. Powell

Abstract The late Paleozoic ice age (LPIA) was characterized by persistently low diversity of marine invertebrates following a second-order mass extinction. Here, we used a data set of North American (paleotropical) fossil occurrences of brachiopod, bivalve, and coral genera from the Paleobiology Database, combined with lithologic data from Macrostrat, to demonstrate that low diversity was caused by the collapse of carbonate environments during the LPIA. After dividing the data by lithology, low diversity was evident only in carbonate environments, whereas diversity within siliciclastic environments actually increased during the LPIA, after a brief decline in the Serpukhovian (late Mississippian). Diversity patterns closely matched respective changes in the volume of carbonate and siliciclastic rocks. The contrasting patterns observed in the two environments suggest that habitat loss was a direct cause of changes in diversity, because other factors, such as temperature, would have affected genera in both environments. A causal relationship is also supported by the finding that diversity remained high in carbonate refugia (carbonate beds within majority-siliciclastic formations) until the Bashkirian, postdating the onset of icehouse conditions by ∼8 m.y. Our results provide a unifying, mechanistic explanation for the distinctive characteristics of the biotic impact, including its disproportionate effect on the tropical marine invertebrate fauna, prolonged recovery from extinction, low macroevolutionary rates during the recovery interval, and regional differences in its expression.


2021 ◽  
Vol 14 ◽  
pp. 117862212110092
Author(s):  
Michele M Tobias ◽  
Alex I Mandel

Many studies in air, soil, and water research involve observations and sampling of a specific location. Knowing where studies have been previously undertaken can be a valuable addition to future research, including understanding the geographical context of previously published literature and selecting future study sites. Here, we introduce Literature Mapper, a Python QGIS plugin that provides a method for creating a spatial bibliography manager as well as a specification for storing spatial data in a bibliography manager. Literature Mapper uses QGIS’ spatial capabilities to allow users to digitize and add location information to a Zotero library, a free and open-source bibliography manager on basemaps or other geographic data of the user’s choice. Literature Mapper enhances the citations in a user’s online Zotero database with geo-locations by storing spatial coordinates as part of traditional citation entries. Literature Mapper receives data from and sends data to the user’s online database via Zotero’s web API. Using Zotero as the backend data storage, Literature Mapper benefits from all of its features including shared citation Collections, public sharing, and an open web API usable by additional applications, such as web mapping libraries. To evaluate Literature Mapper’s ability to provide insights into the spatial distribution of published literature, we provide a case study using the tool to map the study sites described in academic publications related to the biogeomorphology of California’s coastal strand vegetation, a line of research in which air movement, soil, and water are all driving factors. The results of this exercise are presented in static and web map form. The source code for Literature Mapper is available in the corresponding author’s GitHub repository: https://github.com/MicheleTobias/LiteratureMapper


Biology ◽  
2021 ◽  
Vol 10 (2) ◽  
pp. 161
Author(s):  
Irene Deidda ◽  
Roberta Russo ◽  
Rosa Bonaventura ◽  
Caterina Costa ◽  
Francesca Zito ◽  
...  

Invertebrates represent about 95% of existing species, and most of them belong to aquatic ecosystems. Marine invertebrates are found at intermediate levels of the food chain and, therefore, they play a central role in the biodiversity of ecosystems. Furthermore, these organisms have a short life cycle, easy laboratory manipulation, and high sensitivity to marine pollution and, therefore, they are considered to be optimal bioindicators for assessing detrimental chemical agents that are related to the marine environment and with potential toxicity to human health, including neurotoxicity. In general, albeit simple, the nervous system of marine invertebrates is composed of neuronal and glial cells, and it exhibits biochemical and functional similarities with the vertebrate nervous system, including humans. In recent decades, new genetic and transcriptomic technologies have made the identification of many neural genes and transcription factors homologous to those in humans possible. Neuroinflammation, oxidative stress, and altered levels of neurotransmitters are some of the aspects of neurotoxic effects that can also occur in marine invertebrate organisms. The purpose of this review is to provide an overview of major marine pollutants, such as heavy metals, pesticides, and micro and nano-plastics, with a focus on their neurotoxic effects in marine invertebrate organisms. This review could be a stimulus to bio-research towards the use of invertebrate model systems other than traditional, ethically questionable, time-consuming, and highly expensive mammalian models.


1992 ◽  
Vol 49 (5) ◽  
pp. 1010-1017 ◽  
Author(s):  
Nicolas S. Bloom

Total mercury, monomethylmercury (CH3Hg), and dimethylmercury ((CH3)2Hg) in edible muscle were examined in 229 samples, representing seven freshwater and eight saltwater fish species and several species of marine invertebrates using ultraclean techniques. Total mercury was determined by hot HNO3/H2SO4/BrClldigestion, SnCl2 reduction, purging onto gold, and analysis by cold vapor atomic fluorescence spectrometry (CVAFS). Methylmercury was determined by KOH/methanol digestion using aqueous phase ethylation, cryogenic gas chromatography, and CVAFS detection. Total mercury and CH3Hg concentrations varied from 0.011 to 2.78 μg∙g−1 (wet weight basis, as Hg) for all samples, while no sample contained detectable (CH3)2Hg (<0.001 μg∙g−1 as Hg). The observed proportion of total mercury (as CH3Hg) ranged from 69 to 132%, with a relative standard deviation for quintuplicate analysis of about 10%; nearly all of this variability can be explained by the analytical variability of total mercury and CH3Hg. Poorly homogenized samples showed greater variability, primarily because total mercury and CH3Hg were measured on separate aliquots, which vary in mercury concentration, not speciation. I conclude that for all species studied, virtually ail (>95%) of the mercury present is as CH3Hg and that past reports of substantially lower CH3Hg fractions may have been biased by analytical and homogeneity variability.


2021 ◽  
Author(s):  
Ian McCallum ◽  
Stefan Velev ◽  
Finn Laurien ◽  
Reinhard Mechler ◽  
Adriana Keating ◽  
...  

&lt;p&gt;Communities around the world in flood-prone regions are increasingly aware of the benefits of using spatial data to better understand their predicament. With the advent of web mapping, free and open satellite data and the proliferation of mobile technologies, the possibilities for both understanding and improving community resilience are on the rise.&lt;/p&gt;&lt;p&gt;Here we present the &amp;#8220;Flood Resilience Dashboard&amp;#8221;, which is designed to put geo-spatial flood resilience data into the hands of practitioners. The objective is to provide a platform for practitioners in the Zurich Flood Resilience Alliance which gives access to both community resilience data and freely available, peer reviewed flood risk data, which can be used for decision support at scale. This data will include among others the Zurich Flood Resilience Measurement for Communities (FRMC) data, Vulnerability Capacity Assessment (VCA) maps, remote sensing derived information on flooding and other biophysical datasets (e.g. forest cover, water extent), modelled risk information, satellite imagery (e.g. night-time lights), crowdsourced data and more. Using two case studies, we illustrate how the above-mentioned datasets help to better understand community resilience. When co-developed with communities, these examples could potentially be scaled up and applied to similar regions around the world.&lt;/p&gt;


Author(s):  
Somnath Chaudhuri ◽  
Nilanjan Ray

This paper examines current development in Web GIS with the implementation of Geospatial Mashup technologies, such as Google Map in the context of map Mashups, and presents a classification of map Mashups and their application in tourism management and promotion. On the Web GIS context, Mashup is the process of merging multiple sources of data, both spatial and non-spatial, into a single integrated spatial display. It is about extracting spatial data from a non-spatial source and combining with other spatial data and finally displaying it on a map. This paper demonstrates that Geospatial Mashup has great potential to facilitate and widen the rapid development of the future web mapping technology in Web GIS in tourism development. It also highlights on the basic architecture and working principles of Map Mashups in context to tourism management. The final section of this research paper emphasizes on some issues and limitations inherent to the current Mashup technologies like privacy protection, copyright issues etc. which need to be worked out before its wider adoption.


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