scholarly journals EcoBank: A flexible database platform for sharing ecological data

2021 ◽  
Vol 9 ◽  
Author(s):  
Hyun Woo Kim ◽  
Sungsoo Yoon ◽  
Mokyoung Kim ◽  
Manseok Shin ◽  
Heenam Yoon ◽  
...  

Environmental crisis challenges the human race harder than ever before. Ecologists have produced a massive amount of data to cope with the crisis. Accordingly, many national scale ecological database systems have been developed worldwide to manage and analyse these datasets. However, in Korea, ecological datasets produced by different research institutes for different purposes have not been integrated or serviced due to poorly designed information infrastructure. To address this obstacle, we present EcoBank (www.nie-ecobank.kr), an open, web-based ecological database platform designed to play an important role in ecosystem analysis, not only in Korea, but also worldwide. The architecture of EcoBank comprises core technologies of WebGIS, Application Programming Interface (API), responsive web and open-source software (OSS). Comprehensive ecological datasets from three different sources, including the National Institute of Ecology (NIE) in Korea, related national and international platforms and repositories, enter the three conceptual modules in EcoBank: data management, analysis and service. Diverse potential stakeholders of EcoBank can be classified into three groups: researchers, policy-makers and public users. EcoBank aims to expand its horizons through mutual communication amongst these stakeholders. We opened and launched the EcoBank service in December 2019 and have now begun to broaden its network by linking it to other data platforms and repositories over the globe to find possible solutions to ecological issues in Korea.

2020 ◽  
Author(s):  
Hyun Woo Kim ◽  
Sungsoo Yoon ◽  
Mokyoung Kim ◽  
Manseok Shin ◽  
Heenam Yoon ◽  
...  

Environmental crisis challenges the human race harder than ever before. Ecologists have produced a massive amount of data to cope with the crisis. Accordingly, many national scale ecological database systems have been developed worldwide to manage and analyze these datasets. However, in Korea, ecological datasets produced by different research institutes for different purposes have not been integrated or serviced due to the lack of a well-designed information infrastructure. To address this obstacle, we present EcoBank (www.nie-ecobank.kr), an open, web-based ecological database platform designed to play an important role in ecosystem analysis not only in Korea but also worldwide. The architecture of EcoBank comprises core technologies of WebGIS, Application Programming Interface (API), responsive web, and open-source software (OSS). Huge ecological datasets from 3 different sources, including the National Institute of Ecology (NIE) in Korea, related domestic and international platforms and repositories, pass through the three conceptual modules in EcoBank: data management, analysis, and service. Diverse potential stakeholders of EcoBank can be classified into three groups: researchers, policymakers, and public users. EcoBank aims to expand its horizons through mutual communication between these stakeholders. We opened and launched EcoBank service from December 2019, and now began to broaden its network by linking to other data platforms and repositories over the globe to find possible solutions to ecological issues in Korea.


Author(s):  
Adian Fatchur Rochim ◽  
Abda Rafi ◽  
Adnan Fauzi ◽  
Kurniawan Teguh Martono

The use of information technology these days are very high. From business through education activities tend to use this technology most of the time. Information technology uses computer networks for integration and management data. To avoid business problems, the number of network devices installed requires a manageable network configuration for easier maintenance. Traditionally, each of network devices has to be manually configured by network administrators. This process takes time and inefficient. Network automation methods exist to overcome the repetitive process. Design model uses a web-based application for maintenance and automates networking tasks. In this research, the network automation system implemented and built a controller application that used REST API (Representational State Transfer Application Programming Interface) architecture and built by Django framework with Python programming language. The design modeled namely As-RaD System. The network devices used in this research are Cisco CSR1000V because it supports REST API communication to manage its network configuration and could be placed on the server either. The As-RaD System provides 75% faster performance than Paramiko and 92% than NAPALM.


Database ◽  
2020 ◽  
Vol 2020 ◽  
Author(s):  
Shawna Spoor ◽  
Connor Wytko ◽  
Brian Soto ◽  
Ming Chen ◽  
Abdullah Almsaeed ◽  
...  

Abstract Online biological databases housing genomics, genetic and breeding data can be constructed using the Tripal toolkit. Tripal is an open-source, internationally developed framework that implements FAIR data principles and is meant to ease the burden of constructing such websites for research communities. Use of a common, open framework improves the sustainability and manageability of such as site. Site developers can create extensions for their site and in turn share those extensions with others. One challenge that community databases often face is the need to provide tools for their users that analyze increasingly larger datasets using multiple software tools strung together in a scientific workflow on complicated computational resources. The Tripal Galaxy module, a ‘plug-in’ for Tripal, meets this need through integration of Tripal with the Galaxy Project workflow management system. Site developers can create workflows appropriate to the needs of their community using Galaxy and then share those for execution on their Tripal sites via automatically constructed, but configurable, web forms or using an application programming interface to power web-based analytical applications. The Tripal Galaxy module helps reduce duplication of effort by allowing site developers to spend time constructing workflows and building their applications rather than rebuilding infrastructure for job management of multi-step applications.


Author(s):  
Long Niu ◽  
Sachio Saiki ◽  
Shinsuke Matsumoto ◽  
Masahide Nakamura

Purpose The purpose of this paper is to establish an application platform that addresses expensive development cost and effort of indoor location-aware application (InL-Apps) problems caused by tightly coupling between InL-App and indoor positioning systems (IPSs). Design/methodology/approach To achieve this purpose, in this paper, the authors proposes a Web-based integration framework called Web-based Integration Framework for Indoor Location (WIF4InL). With a common data model, WIF4InL integrates indoor location data obtained from heterogeneous IPS. It then provides application-neutral application programming interface (API) for various InL-Apps. Findings The authors integrate two different IPS (RedPin and BluePin) using WIF4InL and conduct a comparative study which is based on sufficiency of essential capabilities of location-dependent queries among three systems: RedPin, BluePin and WIF4InL. WIF4InL supports more capabilities for the location-dependent queries. Through the data and operation integration, WIF4InL even enriches the existing proprietary IPS. Originality/value As WIF4InL allows the loose coupling between IPS and InL-Apps, it significantly improves reusability of indoor location information and operation.


Author(s):  
Lefkothea Spiliotopoulou ◽  
Yannis Charalabidis

There has been significant research in the private sector towards systematic exploitation of the emerging Web 2.0/Web 3.0 and social media paradigms. However, not much has been achieved with regards to the embodiment of similar technologies. Currently, governments and organizations are making considerable efforts, trying to enhance citizens' participation in decision-making and policy-formulation processes. This chapter presents a novel policy analysis framework, proposing a Web-based platform that enables publishing content and micro-applications to multiple Web 2.0 social media and collecting citizens' interactions (e.g. comments, ratings) with efficient use of Application Programming Interfaces (APIs) of these media. Citizens' opinions and interactions can then be processed through different techniques or methods (Web analytics, opinion mining, simulation modeling) in order to use the extracted conclusions as support to government decision and policy makers.


2018 ◽  
Vol 9 (1) ◽  
pp. 33-41
Author(s):  
Fajri Profesio Putra ◽  
Danuri Danuri

Pemetaan demografi berbasis digital saat ini diperlukan dalam memudahkan masyarakat khususnya pejabat daerah dalam mengetahui sebaran populasi suatu wilayah. Peta demografi juga dapat menyajikan data statistik tentang tingkat pendidikan suatu wilayah, pekerjaan, usia, dan tanggungan keluarga. Saat ini untuk informasi demografi pada wilayah pemerintahan tingkat desa Kabupaten Bengkalis masih didata secara manual, sehingga untuk memperoleh informasi masyarakat harus mengakses data atau melihat data dikantor desa. Penelitian sistem demografi penduduk tingkat desa ini merupakan aplikasi berbasis web dimana untuk peta wilayah desa dintegrasikan dengan memanfaatkan fasilitas application programming interface (API). Pada sistem ditampilkan peta desa serta batas-batas wilayah untuk tingkat rt/rw dengan menentuka batas longitude dan latitude. Selanjutnya disediakan menu untuk administrator agar dapat menginputkan data-data kependudukan untuk selanjutnya ditampilkan dalam bentuk grafik. Adanya sistem ini dapat menghasilkan informasi yang berkualitas, terkini serta berguna untuk pengambil keputusan dalam menentukan kebijakan terhadap penduduk. Hal ini juga membantu pemerintah dalam membangun semangat untuk keterbukaan informasi.  Abstract Digital-based demographic mapping is currently required to facilitate the community, especially local officials in knowing the distribution of a region's population. Demographic maps can also provide statistical data about the educational level of a region, occupation, age, and family dependents. Currently, demographic information on the village level of Bengkalis Regency is still recorded manually, so to obtain information the community must access data or view data at the village office. This village population demography system research is a web-based application where the village area map is integrated by utilizing the application programming interface (API) facility. In the system is shown the map of the village as well as the boundaries of the region for rt / rw level by determining the limits of longitude and latitude. Further provided the menu for administrators in order to menginputkan data demography for the next displayed in graphical form. The existence of this system can produce quality information, current and useful for decision makers in determining the policy against the population. It also helps the government in building a passion for information disclosure.


Author(s):  
Matthew Yoder ◽  
Hernán Pereira ◽  
José Luis Pereira ◽  
Dmitry Dmitriev ◽  
Geoffrey Ower ◽  
...  

TaxonWorks is a web-based workbench facilitating curation of a broad cross-section of biodiversity informatics concepts. Its development is currently led by the Species File Group. TaxonWorks has a large, JSON serving, application programming interface (API). This API is slowly being exposed for external use. The API is documented at https://api.taxonworks.org. Here we highlight some existing key features of the API focusing on the TaxonWorks concepts of People, Sources, Collection Objects, Taxon Names, and Downloads and provide a brief roadmap for upcoming additions. Highlights include the ability for data curators to produce shareable bibliographies, DarwinCore Archives (DwC-A), and Catalogue of Life-formatted datasets, access their nomenclature as autocompletes and via many filter facets, share Person metadata including numerous identifier types, and perform basic Geo-JSON and simple DwC-A parameter-based filtering on Collection Objects. As examples of what can be done with the API, we provide several visualizations that are straightforward to implement by those with basic R, Python, Javascript, or Ruby programming skills.


2020 ◽  
Vol 8 (11) ◽  
Author(s):  
Noam Arzt

Public health agencies established immunization registries - now called Immunization Information Systems (IIS) - to consolidate records across provider locations to support more effective immunization of patients and public health surveillance. While initially collecting data through interactive client-server and then web-based interfaces, IIS now collect the vast majority of their data through automated interfaces to electronic health record (EHR) systems using standard application programming interfaces (API). IIS have sophisticated processing rules for the incoming data to ensure data accuracy and completeness. This paper will review the existing workflow, standards, and processes used by IIS to accept, process, and make immunization data available. This will include a review of emerging standards - Fast Healthcare Interoperability Resources (FHIR) - which will likely become dominant over the next few years.


Author(s):  
Santo Wijaya ◽  
Marta H.R.S.R. Sari ◽  
Adian Wihariono Putera

Pendidikan sebagai industri produk dan jasa berbasis ilmu pengetahuan dan keterampilan menghadapi persaingan yang semakin kompetitif dengan banyaknya institusi baik dalam dan luar negeri yang operasional di Indonesia. Untuk meningkatkan daya saing, maka utilisasi teknologi informasi khususnya di era revolusi industri 4.0 menjadi kunci penting. Penelitian ini bertujuan untuk mengembangkan Sistem Informasi Registrasi Mahasiswa Baru (SIRMB) menggunakan kerangka open-source web-based application serta integrasinya dengan teknologi Application Programming Interface (API) Bank BNI menjadikan layanan administrasi yang terotomasi. Proses identifikasi masalah sampai perancangan solusi SIRMB menggunakan analisis gugus kendali mutu (QCC) dengan pendekatan metode Plan-Do-Check-Action (PDCA) sehingga menjamin perbaikan yang berkesinambungan. Penelitian ini berkontribusi terhadap perbaikan 76.9% terhadap proses kerja dengan eliminasi proses kerja manual registrasi mahasiswa baru, sehingga memberikan peningkatan kualitas layanan dan peningkatan produktivitas secara keseluruhan.


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