scholarly journals Expedient synthesis of 1,6-anhydro-α-D-galactofuranose, a useful intermediate for glycobiological tools

2014 ◽  
Vol 10 ◽  
pp. 1651-1656 ◽  
Author(s):  
Luciana Baldoni ◽  
Carla Marino
Keyword(s):  
Hydroxy Group ◽  
Building Blocks ◽  
Nucleophilic Attack ◽  
Step Procedure ◽  
Leaving Group ◽  
Anomeric Carbon ◽  
Good Precursor

A new and efficient three-step procedure for the synthesis of 1,6-anhydro-α-D-galactofuranose is described. The key step involves the formation of the galactofuranosyl iodide by treatment of per-O-TBS-D-Galf with TMSI, the selective 6-O-desilylation by an excess of TMSI, and the simultaneous nucleophilic attack of the 6-hydroxy group on the anomeric carbon, with the iodide as a good leaving group. This compound is a good precursor for building blocks for the construction of 1→6 linkages.

Glycosyl Group Transferases

2007 ◽  
Author(s):  
Perry A. Frey ◽  
Adrian D. Hegeman
Keyword(s):  
Great Majority ◽  
Nucleophilic Attack ◽  
Axial Position ◽  
Equatorial Position ◽  
Leaving Group ◽  
Dilute Aqueous Solutions ◽  
Anomeric Carbon ◽  
Basic Solutions ◽  
Hydrolysis Of ◽  
Acceptor Molecules

Glycosyl group transfer underlies the biosynthesis and breakdown of all nucleotides, polysaccharides, glycoproteins, glycolipids, and glycosylated nucleic acids, as well as certain DNA repair processes. Glycosyl transfer consists of the transfer of the anomeric carbon of a sugar derivative from one acceptor to another, as in, which describes the transfer of a generic pyranosyl ring between nucleophilic atoms :X and :Y of acceptor molecules. The stereochemistry at the anomeric carbon is not specified in eq. 12-1, but the leaving group occupies the axial position in an α-anomer or the equatorial position in a β-anomer. The overall transfer can proceed with either retention or inversion of configuration. In biochemistry, the acceptor atoms can be oxygen, nitrogen, sulfur, or in the biosynthesis of C-nucleosides even carbon. The great majority of biological glycosyl transfer reactions involve transfer between oxygen atoms of different acceptor molecules. Enzymes catalyzing glycosyl transfer are broadly grouped according to whether the acceptor :Y–R2 in is water or another molecule. In the actions of glycosidases, the acceptor is water, and glycosyl transfer results in hydrolysis of a glycoside, a practically irreversible process in dilute aqueous solutions. In the action of glycosyltransferases, the acceptors are molecules with hydroxyl, amide, amine, sulfhydryl, or phosphate groups. The simplest nonenzymatic glycosyl transfer reaction is the hydrolysis of a glycoside, and early studies revealed the fundamental fact that glycosides are much less reactive toward hydrolysis in basic solutions than in acidic solutions. This fact underlies much that is known about the mechanism of glycosyl transfer; that is, the anomeric carbon of a glycoside is remarkably unreactive toward direct nucleophilic attack, but it becomes reactive when one of the oxygens is protonated by an acid, as illustrated in fig. 12-1 for the acid-catalyzed hydrolysis of a generic glycoside. The reaction by both mechanisms in fig. 12-1 proceeds by pre-equilibrium protonation of the glycoside to form oxonium ion intermediates, which are subject to hydrolysis by water. The two mechanisms in fig. 12-1 are of interest. The mechanism proceeding through exocyclic cleavage of the glycoside has historically been regarded as the more likely, and for this reason, the route through endocyclic cleavage has received little consideration.

Coupling of Steroid O-(Carboxymethyl)oxime Derivatives with Amino Alcohols

1996 ◽  
Vol 61 (2) ◽  
pp. 288-297 ◽  
Author(s):  
Vladimír Pouzar ◽  
Ivan Černý
Keyword(s):  
Amino Acids ◽  
Hydroxy Group ◽  
Building Blocks ◽  
Amino Alcohols ◽  
New Approach ◽  
Alternative Synthesis ◽  
Oxime Derivatives ◽  
A Chain ◽  
Derivatives Of

New approach to the preparation of steroids with connecting bridge, based on an O-carboxymethyloxime (CMO) structure, and with terminal hydroxy group, is presented. 17-CMO derivatives of 3β-acetoxy- and 3β-methoxymethoxyandrost-5-en-17-one were condensed with α,ω-amino alcohols to give derivatives with a chain of seven to nine atoms. After THP-protection, these compounds were converted to 3-keto-4-ene derivatives. An alternative synthesis consisted in transformation of 17-CMO derivatives with bonded amino acids by reduction of the terminal carboxyl. The resulting compounds were designed as building blocks for the preparation of bis-haptens for sandwich immunoassays.

Synthesis of Sterically Congested Carbamates of Carbohydrates through Organic Base Catalysis

Synthesis ◽  
2019 ◽  
Vol 51 (15) ◽  
pp. 2897-2908 ◽  
Author(s):  
Anji Chen ◽  
Dan Wang ◽  
Lalith P. Samankumara ◽  
Guijun Wang
Keyword(s):  
Hydroxy Group ◽  
Current Method ◽  
Building Blocks ◽  
Base Catalysis ◽  
Organic Base ◽  
Molecular Assemblies ◽  
Effective Catalyst ◽  
Organic Bases ◽  
Derivatives Of ◽  
General Method

4,6-O-Benzylidene acetal protected α-methoxy d-glucose and d-glucosamine are useful building blocks for the syntheses of carbohydrate derivatives and functional molecular assemblies. In this research, we have developed a general method for the preparation of C-3 carbamate derivatives of densely functionalized glucose and glucosamine with isocyanates using organic bases as catalysts. Without a suitable catalyst, the C-3 hydroxy group of the glucosamine derivative could not be converted into the corresponding carbamates when treated with isocyanates. Several organic bases were screened as the catalysts for the reactions, and we discovered that 5.0 mol% of 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) was an effective catalyst for the carbamoylation reaction. A library of both alkyl and aryl carbamate derivatives of the two sterically congested carbohydrates have been effectively synthesized using the current method.

The Synthesis of (R)-2',3'-Dihydroxypropyl 5-Deoxy-5-Dimethylarsinyl-β-D-Riboside, a Naturally Occurring Arsenic-Containing Carbohydrate

1987 ◽  
Vol 40 (11) ◽  
pp. 1901 ◽  
Author(s):  
DP Mcadam ◽  
AMA Perera ◽  
RV Stick
Keyword(s):  
Natural Product ◽  
Hydroxy Group ◽  
Title Compound ◽  
Protecting Groups ◽  
Giant Clam ◽  
Free Hydroxy Group ◽  
Naturally Occurring ◽  
Step Procedure ◽  
Tridacna Maxima ◽  
Subsequent Chemical

The synthesis of the title compound, isolated from the brown kelp ( Ecklonia radiata ) or the giant clam (Tridacna maxima), is reported. Glycosidation of 1-O-acetyl-2,3,5-tri- O- benzoyl -β-D-ribose, either directly with (S)-1,2-di-O-benzylglycerol or via the derived orthoester with (S)-1,2-O-isopropylideneglycerol, led to two fully protected glycerol β-D- ribofuranosides. Subsequent chemical manipulations led to a common intermediate having a free hydroxy group at C5 of the D-ribose residue. Replacement of this hydroxy group by a chlorine atom allowed the introduction of the dimethylarsinyl group at C5 in a two-step procedure, and removal of protecting groups provided the natural product.

Discovery and Biocatalytic Application of a PLP-Dependent Amino Acid γ-Substitution Enzyme that Catalyzes C-C Bond Formation

2020 ◽  
Author(s):  
Mengbin Chen ◽  
Chun-Ting Liu ◽  
Yi Tang
Keyword(s):  
Amino Acids ◽  
Biosynthetic Pathway ◽  
Pyridoxal Phosphate ◽  
Biochemical Characterization ◽  
Indole Alkaloid ◽  
Building Blocks ◽  
Nucleophilic Attack ◽  
Keto Esters ◽  
Key Enzyme

Pyridoxal phosphate (PLP)-dependent enzymes can catalyze various transformations of amino acids at alpha, beta, and gamma positions. These versatile enzymes are prominently involved in the biosynthesis of nonproteinogenic amino acids as building blocks of natural products, and are attractive biocatalysts. Here, we report the discovery of a two-step enzymatic synthesis of (2<i>S, </i>6<i>S</i>)-6-methyl pipecolate <b>1</b>, from the biosynthetic pathway of indole alkaloid citrinadin. The key enzyme CndF is PLP-dependent and catalyzes synthesis of (<i>S</i>)-2-amino-6-oxoheptanoate <b>3</b> that is in equilibrium with the cyclic Schiff base. The second enzyme CndE is a stereoselective imine reductase that gives <b>1</b>. Biochemical characterization of CndF showed this enzyme performs gamma-elimination of <i>O</i>-acetyl L-homoserine to generate the vinylglycine ketimine, which is subjected to nucleophilic attack by acetoacetate to form the new C<sub>gamma</sub>-C<sub>delta</sub> bond in <b>3 </b>and complete the gamma-substitution reaction. CndF displays substrate promiscuity towards different beta-keto carboxylate and esters. Using a recombinant <i>Aspergillus </i>strain expressing CndF and CndE, feeding various alkyl-beta-keto esters led to the biosynthesis of 6-substituted L-pipecolates. The discovery of CndF expands the repertoire of reactions that can be catalyzed by PLP-dependent enzymes.

The reactions of mercaptide anions with chlorinated sulfones

1977 ◽  
Vol 55 (12) ◽  
pp. 2316-2322 ◽  
Author(s):  
Richard F. Langler ◽  
James A. Pincock
Keyword(s):  
Substituent Effects ◽  
Nucleophilic Attack ◽  
Leaving Group

Mercaptide anions react with chlorinated sulfones in two modes, i.e. nucleophilic attack on carbon with chlorine as the leaving group and/or nucleophilic attack on chlorine with concomitant carbanion formation. Mercaptide anion pKb, degree of chlorination of the sulfone substrate, and substituent effects are qualitatively assessed in terms of the propensity for nucleophilic attack at carbon or chlorine.

Synthetically Important Ring-Opening Acylations of Alkoxybenzenes

Synthesis ◽  
2020 ◽  
Vol 52 (24) ◽  
pp. 3764-3780
Author(s):  
Ranadeep Talukdar
Keyword(s):  
Lewis Acid ◽  
Ring Opening ◽  
Building Blocks ◽  
Nucleophilic Attack ◽  
Cyclic Ketones ◽  
Wide Range ◽  
Cyclic Molecules ◽  
Nucleophilic Ring Opening ◽  
Molecular Rings

AbstractCyclic ketones, anhydrides, lactams and lactones are a particular class of molecules that are often used in synthesis, wherein their electrophilic properties are leveraged to enable facile Friedel–Crafts ring openings through nucleophilic attack at the carbonyl sp2 centre. The use of electron-rich alkoxybenzenes as nucleophiles has also become important since the discovery of the Friedel–Crafts reaction. As a result, various isomeric alkoxybenzenes are used for preparing starting materials in target-oriented syntheses. This review covers the instances of different alkoxybenzenes that are used as nucleophiles in ring-opening acylations with carbonyl-containing cyclic electrophiles, for the construction of important building blocks for multistep transformations. This review summarizes the ring-opening functionalization of three- to seven-membered molecular rings with alkoxybenzenes in a Friedel–Crafts fashion. Sometimes the rings need subtle or considerable activation by the help of Lewis acid(s), followed by nucleophilic attack. This review is aimed to be a summary of the important acylations of electron-rich alkoxybenzenes by nucleophilic ring-opening of cyclic molecules. The works cited employ a wide range of conditions and differently substituted substrates for target-oriented syntheses.1 Introduction and Scope2 Arenes for Acylative Ring Opening2.1 Three-Membered Rings: Ring Opening of Oxirane-2,3-dione2.2 Four-Membered Rings2.2.1 Ring Opening of Cyclobutanones2.2.2 Ring Opening of β-Lactams2.2.3 Ring Opening of β-Lactone2.3 Five-Membered Rings2.3.1 Ring Opening of Phthalimides2.3.2 Ring Opening of γ-Lactones2.3.3 Ring Opening of Anhydrides2.4 Six-Membered Rings2.5 Seven-Membered Rings3 Conclusion

scholarly journals Phenomenological models of NaV1.5. A side by side, procedural, hands-on comparison between Hodgkin-Huxley and kinetic formalisms

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Emilio Andreozzi ◽  
Ilaria Carannante ◽  
Giovanni D’Addio ◽  
Mario Cesarelli ◽  
Pietro Balbi
Keyword(s):  
Ion Channels ◽  
Kinetic Models ◽  
Computational Models ◽  
Building Blocks ◽  
Type Model ◽  
Biologically Inspired ◽  
Computational Burden ◽  
Markov Type ◽  
Step Procedure ◽  
Hands On

AbstractComputational models of ion channels represent the building blocks of conductance-based, biologically inspired models of neurons and neural networks. Ion channels are still widely modelled by means of the formalism developed by the seminal work of Hodgkin and Huxley (HH), although the electrophysiological features of the channels are currently known to be better fitted by means of kinetic Markov-type models. The present study is aimed at showing why simplified Markov-type kinetic models are more suitable for ion channels modelling as compared to HH ones, and how a manual optimization process can be rationally carried out for both. Previously published experimental data of an illustrative ion channel (NaV1.5) are exploited to develop a step by step optimization of the two models in close comparison. A conflicting practical limitation is recognized for the HH model, which only supplies one parameter to model two distinct electrophysiological behaviours. In addition, a step by step procedure is provided to correctly optimize the kinetic Markov-type model. Simplified Markov-type kinetic models are currently the best option to closely approximate the known complexity of the macroscopic currents of ion channels. Their optimization can be achieved through a rationally guided procedure, and allows to obtain models with a computational burden that is comparable with HH models one.

Studies of azo and azoxy dyestuffs. Part 18. Kinetics and mechanism of the hydrolysis of 3- and 4-(p′-methoxyphenylazo)pyridines in aqueous sulfuric acid media

1986 ◽  
Vol 64 (11) ◽  
pp. 2115-2126 ◽  
Author(s):  
Erwin Buncel ◽  
Ikenna Onyido
Keyword(s):  
Sulfuric Acid ◽  
Transition States ◽  
Activation Parameters ◽  
Nucleophilic Attack ◽  
Acid Solutions ◽  
Acid Media ◽  
Charge Delocalization ◽  
Leaving Group ◽  
The Difference ◽  
Hydrolysis Of

The kinetics of hydrolysis of 4-(p′-methoxyphenylazo)pyridine, 1, and its 3-isomer, 2, have been studied in moderately concentrated sulfuric acid media at 25 °C. In all the acid solutions investigated, 1 reacted faster than 2; rate differences between the two compounds varied from ca. 1000-fold in the dilute region of acidity to ca. 250-fold in the more concentrated acid solutions. The observed first-order rate constants, kψ, for both substrates exhibit a maximum, at ca. 42% H2SO4 and 47% H2SO4 for 1 and 2 respectively. Activation parameters have also been determined. The pKa values for the second protonation equilibria of 1 and 2 have been evaluated and structures of the diprotonated species are discussed. Hydrolysis is shown to occur from the diprotonated substrates and two main mechanisms are operative. The first is an A-2 type mechanism, which involves rate-limiting attack of H2O on the aryl carbon center giving delocalized transition states and intermediates in which the pyridinium and azonium functions are involved in charge delocalization. Subsequent transfer of a proton and detachment of the leaving group are fast processes. In the second A-SE2 type mechanism, nucleophilic attack and transfer of the proton are fast steps preceding the slow general acid catalyzed separation of the leaving group. The difference in reactivity of the two compounds is attributed to differences in extent of charge delocalization in the transition states of the reactions: for 1 both the pyridinium and protonated azonium functions are involved whereas for 2 only the azonium function participates in charge delocalization.

Sign in / Sign up

Export Citation Format

Share Document