Mitochondrial DNA haplotype distribution patterns inPinus ponderosa(Pinaceae): Range-wide evolutionary history and implications for conservation

2013 ◽  
Vol 100 (8) ◽  
pp. 1562-1579 ◽  
Author(s):  
Kevin M. Potter ◽  
Valerie D. Hipkins ◽  
Mary F. Mahalovich ◽  
Robert E. Means
Keyword(s):  
Mitochondrial Dna ◽  
Evolutionary History ◽  
Distribution Patterns ◽  
Haplotype Distribution ◽  
Mitochondrial Dna Haplotype

Completely disjunct mitochondrial DNA haplotype distribution without a phylogeographic break in a planktonic developing gastropod

2007 ◽  
Vol 153 (3) ◽  
pp. 421-429 ◽  
Author(s):  
Heidi Van den Broeck ◽  
Karin Breugelmans ◽  
Hans De Wolf ◽  
Thierry Backeljau
Keyword(s):  
Mitochondrial Dna ◽  
Haplotype Distribution ◽  
Phylogeographic Break ◽  
Mitochondrial Dna Haplotype

Mitochondrial DNA Haplotype Diversity in Two Portunid Populations Found along the Georgia and South Carolina Coasts

2021 ◽  
Vol 20 (2) ◽  
Author(s):  
Amy Abdulovic-Cui ◽  
Sierra Mannix ◽  
Austin Coleman ◽  
Brittany White ◽  
Keturah Mingledolph ◽  
...  
Keyword(s):  
Mitochondrial Dna ◽  
South Carolina ◽  
Haplotype Diversity ◽  
Mitochondrial Dna Haplotype

scholarly journals Mitochondrial DNA Diversity of Modern, Ancient and Wild Sheep (Ovis gmelinii anatolica) from Turkey: New Insights on the Evolutionary History of Sheep

PLoS ONE ◽  
2013 ◽  
Vol 8 (12) ◽  
pp. e81952 ◽  
Author(s):  
Sevgin Demirci ◽  
Evren Koban Baştanlar ◽  
Nihan Dilşad Dağtaş ◽  
Evangelia Pişkin ◽  
Atilla Engin ◽  
...  
Keyword(s):  
Mitochondrial Dna ◽  
Evolutionary History ◽  
Dna Diversity ◽  
History Of ◽  
Wild Sheep

scholarly journals Different Evolutionary History for Basque Diaspora Populations in USA and Argentina Unveiled by Mitochondrial DNA Analysis

PLoS ONE ◽  
2015 ◽  
Vol 10 (12) ◽  
pp. e0144919 ◽  
Author(s):  
Miriam Baeta ◽  
Carolina Núñez ◽  
Sergio Cardoso ◽  
Leire Palencia-Madrid ◽  
Sergio Piñeiro-Hermida ◽  
...  
Keyword(s):  
Mitochondrial Dna ◽  
Evolutionary History ◽  
Dna Analysis ◽  
Mitochondrial Dna Analysis

scholarly journals First Record of a Novel Mitochondrial DNA Haplotype of a Marble Trout Lineage of Salmo Trutta in Turkey

10.4194/ga452 ◽  
2021 ◽  
Vol 6 (1) ◽  
Author(s):  
Fevzi Bardakci ◽  
Nazan Acar ◽  
Tulin Arslan ◽  
Riadh Badraoui
Keyword(s):  
Mitochondrial Dna ◽  
Salmo Trutta ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Aegean Sea ◽  
First Record ◽  
Unique Haplotype ◽  
Marble Trout ◽  
Mitochondrial Dna Control Region ◽  
Mitochondrial Dna Haplotype

A new record of a marble trout mtDNA haplotype known to be restricted to Adriatic basin (called marmoratus lineage within Salmo trutta complex) has been reported from Eşen Stream in the Aegean Sea basin of southeastern Turkey, based on sequence data of the mitochondrial DNA control region. The results of this study showed a single unique haplotype from this population, called MATR1. Phylogenetic analyses of this haplotype along with other haplotypes belonging to different mitochondrial DNA lineages of the S. trutta complex confirmed the existence of the marmoratus lineage in Turkey, suggesting a possible river capture between the Adriatic and Aegean Sea basins until the last (Würmian) marine regression.

scholarly journals Phylogeography of the California Thrasher (Toxostoma Redivivum) Based on Nested-Clade Analysis of Mitochondrial-DNA Variation

The Auk ◽  
2003 ◽  
Vol 120 (2) ◽  
pp. 346-361
Author(s):  
Erik A. Sgariglia ◽  
Kevin J. Burns
Keyword(s):  
Mitochondrial Dna ◽  
Range Expansion ◽  
Evolutionary History ◽  
Isolation By Distance ◽  
Nested Clade Analysis ◽  
Dna Variation ◽  
History Of ◽  
Past Fragmentation ◽  
Intraspecific Relationships ◽  
Geologic Data

Abstract Distribution of genealogical lineages within a species is likely the result of a complicated series of ecological and historical events. Nested-clade analysis is specifically designed as an objective phylogeographic approach for inferring evolutionary processes on a spatial and temporal scale for small subclades within a larger set of intraspecific relationships. Here, we use nested-clade analysis as well as other phylogeographic methods to investigate the evolutionary history of California Thrasher (Toxostoma redivivum) populations. Inferences resulting from nested clade analysis suggest a history that includes past fragmentation, range expansion, and isolation-by-distance. Along with root information, those inferences enable the construction of a biogeographic scenario for this species involving general southern ancestry, an early north–south division, northward range expansion, and a southward back-expansion into an already populated southern region. Isolation-by-distance is also identified, particularly in southern California, indicating that gene flow between localities does occur but is restricted. Many conclusions drawn from this study are concordant with geologic data as well as phylogeographic scenarios drawn for other codistributed California taxa.

scholarly journals Tracking the Distribution and Burst of Nuclear Mitochondrial DNA Sequences (NUMTs) in Fig Wasp Genomes

Insects ◽  
2020 ◽  
Vol 11 (10) ◽  
pp. 680
Author(s):  
Jian-Xia Wang ◽  
Jing Liu ◽  
Yun-Heng Miao ◽  
Da-Wei Huang ◽  
Jin-Hua Xiao
Keyword(s):  
Mitochondrial Dna ◽  
Dna Sequences ◽  
Theoretical Basis ◽  
Nuclear Genome ◽  
Distribution Patterns ◽  
Good Evidence ◽  
Fig Wasp ◽  
Fig Wasps ◽  
Exogenous Dna ◽  
Specific Distribution

Mitochondrial DNA sequences can be transferred into the nuclear genome, giving rise to nuclear mitochondrial DNA sequences (NUMTs). NUMTs have been described in numerous eukaryotes. However, the studies on the distribution of NUMTs and its influencing factors are still inadequate and even controversial. Previous studies have suggested that Hymenoptera may be a group rich in NUMTs, in which we selected 11 species of fig wasps (Chalcidoidea, Hymenoptera) to analyze the distribution and evolution of NUMTs at the genomic level. The results showed that the contents of NUMTs varied greatly in these species, and bursts of NUMTs existed in some species or lineages. Further detailed analyses showed that the large number of NUMTs might be related to the large genomes; NUMTs tended to be inserted into unstable regions of the genomes; and the inserted NUMTs might also be affected by transposable elements (TEs) in the neighbors, leading to fragmentations and duplications, followed by bursts of NUMTs. In summary, our results suggest that a variety of genomic environmental factors can determine the insertion and post-insertion fate of NUMTs, resulting in their species- or lineage-specific distribution patterns, and that studying the evolution of NUMTs can provide good evidence and theoretical basis for exploring the dynamics of exogenous DNA entering into the nuclear genome.

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