Development of nuclear SSRs for the insular shrub Clerodendrum izuinsulare (Verbenaceae) and the widespread C. trichotomum

2011 ◽  
Vol 98 (11) ◽  
pp. e333-e336 ◽  
Author(s):  
Leiko Mizusawa ◽  
Shingo Kaneko ◽  
Masami Hasegawa ◽  
Yuji Isagi
Keyword(s):  
Nuclear Ssrs

Soybean germplasm pools in Asia revealed by nuclear SSRs

2003 ◽  
Vol 106 (3) ◽  
pp. 445-453 ◽  
Author(s):  
J. Abe ◽  
D. Xu ◽  
Y. Suzuki ◽  
A. Kanazawa ◽  
Y. Shimamoto
Keyword(s):  
Soybean Germplasm ◽  
Nuclear Ssrs

scholarly journals Use of Self-incompatibility Gene and Nuclear SSRs as a Molecular Tool to Detect the Genome Derived from Prunus yedoensis "Someiyoshino".

2009 ◽  
Vol 91 (5) ◽  
pp. 354-359 ◽  
Author(s):  
Shuri Kato ◽  
Hiroaki Ishikawa ◽  
Yasuomi Ohta ◽  
Sayoko Hattori-Ogawa ◽  
Yuzuru Mukai
Keyword(s):  
Self Incompatibility ◽  
Use Of Self ◽  
Molecular Tool ◽  
Prunus Yedoensis ◽  
Nuclear Ssrs

scholarly journals Genetic Diversity and Population Structure in Vicia faba L. Landraces and Wild Related Species Assessed by Nuclear SSRs

PLoS ONE ◽  
2016 ◽  
Vol 11 (5) ◽  
pp. e0154801 ◽  
Author(s):  
Hugo R. Oliveira ◽  
Diana Tomás ◽  
Manuela Silva ◽  
Susana Lopes ◽  
Wanda Viegas ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Vicia Faba ◽  
Related Species ◽  
Vicia Faba L ◽  
Nuclear Ssrs

CHARACTERISATION OF TRADITIONAL PORTUGUESE CHESTNUT CULTIVARS BY NUCLEAR SSRS

2005 ◽  
pp. 437-440 ◽  
Author(s):  
R. Costa ◽  
T. Valdiviesso ◽  
L. Marum ◽  
L. Fonseca ◽  
O. Borges ◽  
...  
Keyword(s):  
Nuclear Ssrs

Genetic structure of Cerasus jamasakura, a Japanese flowering cherry, revealed by nuclear SSRs: implications for conservation

2009 ◽  
Vol 122 (4) ◽  
pp. 367-375 ◽  
Author(s):  
Yoshiaki Tsuda ◽  
Madoka Kimura ◽  
Shuri Kato ◽  
Toshio Katsuki ◽  
Yuzuru Mukai ◽  
...  
Keyword(s):  
Genetic Structure ◽  
Flowering Cherry ◽  
Nuclear Ssrs ◽  
Cerasus Jamasakura

scholarly journals Insights into evolving global populations of Phytophthora infestans via new complementary mtDNA haplotype markers and nuclear SSRs

PLoS ONE ◽  
2019 ◽  
Vol 14 (1) ◽  
pp. e0208606 ◽  
Author(s):  
Frank N. Martin ◽  
Yonghong Zhang ◽  
David E. L. Cooke ◽  
Mike D. Coffey ◽  
Niklaus J. Grünwald ◽  
...  
Keyword(s):  
Phytophthora Infestans ◽  
Nuclear Ssrs ◽  
Mtdna Haplotype

scholarly journals Development and validation of Acacia koa and A. koaia nuclear SSRs using Illumina sequencing

2018 ◽  
Vol 67 (1) ◽  
pp. 20-25
Author(s):  
Shaneka S. Lawson ◽  
Aziz Ebrahimi
Keyword(s):  
Genome Sequencing ◽  
Illumina Sequencing ◽  
Simple Sequence Repeats ◽  
Gc Content ◽  
Acacia Koa ◽  
The Past ◽  
Nuclear Ssr ◽  
Nuclear Ssrs ◽  
Development And Validation ◽  
Simple Sequence

Abstract Koa (Acacia koa) and sub-species koaia (A. koaia) are two of more than 1,200 species from the genus Acacia within the Leguminosae (also designated Fabaceae) family. In the past, koa and koaia forests were found throughout the Hawaiian archipelago but populations have dramatically decreased. Comprehensive analyses of simple sequence repeats (SSRs) have not been published previously. Here we use genome sequencing and bioinformatics tools to report development of 100,000+ nuclear SSR (nuSSR) markers for use in koa and koaia genome studies with transcriptome SSR information was inclu­ded for comparison. Over 10,000 high-value SSRs (40-60 % GC content) were isolated with 3,600+ further validated by ePCR. SSRs generated in this work can assist current efforts to sustai­nably increase in koa and koaia populations.

scholarly journals Genetic analysis of the cultivated potato Solanum tuberosum L. Phureja Group using RAPDs and nuclear SSRs

2006 ◽  
Vol 113 (8) ◽  
pp. 1515-1527 ◽  
Author(s):  
M. Ghislain ◽  
D. Andrade ◽  
F. Rodríguez ◽  
R. J. Hijmans ◽  
D. M. Spooner
Keyword(s):  
Solanum Tuberosum ◽  
Genetic Analysis ◽  
Solanum Tuberosum L ◽  
Cultivated Potato ◽  
Nuclear Ssrs

scholarly journals Genepool Variation in Genus Glycine Subgenus Soja Revealed by Polymorphic Nuclear and Chloroplast Microsatellites

Genetics ◽  
1996 ◽  
Vol 144 (2) ◽  
pp. 793-803 ◽  
Author(s):  
W Powell ◽  
M Morgante ◽  
J J Doyle ◽  
J W McNicol ◽  
S V Tingey ◽  
...  
Keyword(s):  
Fragment Length Polymorphism ◽  
Diversity Indices ◽  
Chloroplast Microsatellites ◽  
The Core ◽  
Phenetic Relationships ◽  
Allelic Variability ◽  
Soybean Genotypes ◽  
Ssr Loci ◽  
Nuclear Ssrs ◽  
Simple Sequence

Abstract A combination of nuclear and chloroplast simple sequence repeats (SSRs) have been used to investigate the levels and pattern of variability detected in Glycine max and G. soja genotypes. Based on the analysis of 700 soybean genotypes with 115 restriction fragment length polymorphism (RFLP) probes, 12 accessions were identified that represent 92% of the allelic variability detected in this genepool. These 12 core genotypes together with a sample of G. max and G. soja accessions were evaluated with 11 nuclear SSRs that detected 129 alleles. Compared with the other G. max and G. soja genotypes sampled, the core genotypes represent 40% of the allelic variability detected with SSRs. Despite the multi-allelic nature of soybean SSRs, dendrograms representing phenetic relationships between accessions clustered according to their subspecies origin. In addition to biparentally inherited nuclear SSRs, two uniparentally (maternally) transmitted chloroplast SSRs were also studied. A total of seven haplotypes were identified, and diversity indices of 0.405 ± 0.088 and 0.159 ± 0.071 were obtained for the two chloroplast SSRs. The availability of polymorphic SSR loci in the chloroplast genome provides new opportunities to investigate cytonuclear interactions in plants.

GENOTYPING CASTANEA SATIVA × C. CRENATA AND C. SATIVA × C. MOLLISSIMA F1 HYBRIDS USING NUCLEAR SSRS

2008 ◽  
pp. 107-112 ◽  
Author(s):  
D. Batista ◽  
T. Valdiviesso ◽  
L. Santos ◽  
O.S. Paulo ◽  
J. Gomes-Laranjo ◽  
...  
Keyword(s):  
Castanea Sativa ◽  
F1 Hybrids ◽  
Nuclear Ssrs
Sign in / Sign up

Export Citation Format

Share Document