scholarly journals A Contribution to the Characterization of Ruppia drepanensis (Ruppiaceae), a Key Species of Threatened Mediterranean Wetlands

2021 ◽  
Vol 106 ◽  
pp. 1-9
Author(s):  
Olga De Castro ◽  
Anna Geraci ◽  
Anna Maria Mannino ◽  
Nicolina Mormile ◽  
Annalisa Santangelo ◽  
...  
Keyword(s):  
Dna Barcoding ◽  
Mediterranean Region ◽  
Morphological Analysis ◽  
Taxonomic Status ◽  
Inland Waters ◽  
Separate Species ◽  
Historical Materials ◽  
Key Species ◽  
Locus Classicus

To elucidate the taxonomic status of Ruppia drepanensis Tineo ex Guss. (Alismatales, Ruppiaceae), we performed morphological analysis and DNA barcoding of historical materials (including the lectotype) and fresh samples (including those from a recently discovered population near the locus classicus in Sicily, Italy). We conclude that R. drepanensis is a separate species, closely related to R. spiralis L. ex Dumort., that occurs in temporary inland waters from the western to central sectors of the Mediterranean region. We also highlight the importance of vouchers and the need to link molecular investigations to field, ecological, and morphological investigations.

Electrophoretic characterization of Solomon Islands populations of Nyctimene and Rousettus (Chiroptera: Pteropodidae).

2003 ◽  
Vol 25 (1) ◽  
pp. 41 ◽  
Author(s):  
JM Macaranas ◽  
D Colgan ◽  
S Ingleby
Keyword(s):  
Papua New Guinea ◽  
Solomon Islands ◽  
Taxonomic Status ◽  
Genetic Distances ◽  
Allozyme Data ◽  
Separate Species ◽  
Bismarck Archipelago ◽  
A Minor ◽  
Two Populations

The taxonomic status of fruitbats belonging to the genera Nyctimene and Rousettus from the Solomon Islands was investigated using allozyme electrophoresis. Two populations from the Bismarck Archipelago (Papua New Guinea) were included as reference profiles. The allozyme data at 23 loci assigned all specimens into either Nyctimene albiventer or Nyctimene major. The N. albiventer specimens comprised two subspecies, N. a. papuanus from the Bismarck Archipelago and N. a. bougainville from the Solomon Islands. No support was evident for bougainville being a separate species, and indeed the data suggest that N. a. bougainville encompasses the previously described species N. malaita and subspecies N. a. minor. Genetic distances between populations of R. amplexicaudatus from the Bismarck Archipelago and the Solomon Islands were generally low, supporting recent morphological assessments that the subspecies hedigeri, from the majority of the Solomon Islands, should be considered synonymous with subspecies brachyotis. An individual from Choiseul (Solomon Islands) with a distinctive allozyme profile is the only evidence of taxonomic complexity in R. amplexicaudatus.

scholarly journals Phylogeographic and molecular characterization of Pronghorn spiny lobster (Panulirus penicillatus Olivier, 1791) in the Southern Coast of Java and Lombok, Indonesia

2020 ◽  
Vol 21 (12) ◽  
Author(s):  
Irwani ◽  
Diah Permata Wijayanti ◽  
ANINDIA WIRA SATRIA ◽  
AGUS SABDONO
Keyword(s):  
Dna Barcoding ◽  
Molecular Characterization ◽  
Spiny Lobster ◽  
Taxonomic Status ◽  
Molecular Technique ◽  
Southern Coast ◽  
Central Java ◽  
Nucleotide Divergence ◽  
First Time

Abstract. Irwani, Wijayanti DP, Satria AW, Sabdono A. 2020. Phylogeographic and molecular characterization of Pronghorn spiny lobster (Panulirus penicillatus Olivier, 1791) in the Southern Coast of Java and Lombok, Indonesia. Biodiversitas 21: 5691-5697. Panulirus penicillatus is one of the most important lobster species in Central Java. It is one of the most populous species in the southern part of Java and Lombok. However, uncontrolled catching causes a decrease in the population of P. penicillatus. Despite such human threats, information about the taxonomic status of this species is limited. Several previous reports on the taxonomy of this species have always been based on the morphological features that cause ambiguous identification. Therefore, this study aimed to establish the relationships of P. penicillatus in southern parts of the southern part of Java and Lombok by using the molecular technique. Twelve samples were collected from four study areas of the southern coast of the southern part of Java and Lombok and identified using DNA barcoding technique. DNA barcoding technique was used for the first time to identify P. penicillatus in this region. This study demonstrated that all specimens belonged to P. penicillatus. However, one specimen (PPK-06) showed high intraspecies nucleotide divergence that formed a distinct subclade. Therefore, the specimen (PPK-06) could represent a cryptic species within P. penicillatus that needs to be studied further.

Synonymize Arma chinensis as Arma custos based on morphological, molecular and geographical data

Zootaxa ◽  
2018 ◽  
Vol 4455 (1) ◽  
pp. 161 ◽  
Author(s):  
QING ZHAO ◽  
JIUFENG WEI ◽  
WENJUN BU ◽  
GUOQING LIU ◽  
HUFANG ZHANG
Keyword(s):  
Dna Barcoding ◽  
Taxonomic Status ◽  
Morphological Characters ◽  
Similar Species ◽  
Separate Species ◽  
Geographical Data ◽  
Additional Tool ◽  
New Synonym

Arma custos and A. chinensis have a very conspicuous difference in the shape of the pronotal humeral angle, but the genitalic morphological characters are ambiguous and difficult to recognize. The aim of this study was to analyze the taxonomic status of A. chinensis and A. custos based on morphological, molecular, and geographical evidence, and to determine whether DNA barcoding could be a useful additional tool for differentiating similar species. The results clearly demonstrate that A. custos and A. chinensis have not diverged into separate species. So, the following new synonym is proposed: Arma chinensis Fallou, 1881 = Arma custos (Fabricius, 1794) syn. nov.. The results also showed that DNA barcoding using the marker COI can resolve insect taxonomic problems.

scholarly journals Unattached Cystoseira s. l. in the Black Sea: taxonomy of Gongolaria barbata f. repens comb. nov.

Algologia ◽  
2021 ◽  
Vol 31 (2) ◽  
pp. 150-162
Author(s):  
S.S. Sadogurska ◽  
Keyword(s):  
Black Sea ◽  
Phylogenetic Trees ◽  
Morphological Analysis ◽  
Taxonomic Status ◽  
The Black Sea ◽  
Seagrass Meadows ◽  
Key Species ◽  
The Mediterranean ◽  
Morphological Differences ◽  
Lateral Branches

Brown algae of the genus Cystoseira s. l. are key species in the Mediterranean basin, including the Black Sea and the Sea of Azov. In addition to the typical attached forms of Cystoseira sensu lato (Ericaria crinita f. bosphorica (Sauvageau) S.S.Sadogurska, J.Neiva et A.Israel, and Gongolaria barbata (Stackhouse) Kuntze), an unattached form was previously described for the Black Sea. The taxonomic status of this taxon remained uncertain. According to the results of a comparative morphological analysis, it is shown that the Black Sea unattached samples belong to the species Gongolaria barbata. But unattached thalli, collected in the Dzharylhach Bay in the seagrass meadows of Zostera marina L., have morphological differences. Thalli are 30–50 cm long, light brown or yellow-brown; the holdfast is absent, the main axis is reduced or, if present, very short and thin (2–4 mm). Lateral branches are thin (2–3 mm), smooth; their length is 15–30 cm. The ultimate branches are filamentous, sometimes with oval-shaped aerocysts, single or arranged in chains. Receptacles are rarely present, spindle-shaped, 8–12 mm in length, without spines, but with a sterile mucron at the end. Therefore, a new nomenclature combination is proposed: Gongolaria barbata f. repens (A.D. Zinova & Kalugina) S.S. Sadogurska comb. nov. It is shown that the nomenclature combination Cystoseira concatenata f. repens A.D.Zinova & Kalugina is invalid. In addition, it is shown that the unattached Gongolaria barbata f. repens is not synonymous with the species Cystoseira aurantia Kützing sensu Orellana et al. (2019), which authors previouslyrearranged to the genus Cystoseira s.s. Analysis of phylogenetic trees from the works by different authors showed that unattached samples from the Mediterranean Sea and the Atlantic Ocean do not belong to the Gongolaria barbata clade and may be unattached forms of other species.

Reinstatement of Centaurea cyanomorpha (Asteraceae), an endemic species from Southeastern Bulgaria

Phytotaxa ◽  
2016 ◽  
Vol 268 (1) ◽  
pp. 46 ◽  
Author(s):  
STOYAN S. STOYANOV
Keyword(s):  
Taxonomic Status ◽  
Type Specimen ◽  
Detailed Examination ◽  
Morphological Characters ◽  
New Combination ◽  
Separate Species ◽  
Close Relatives ◽  
The Town ◽  
Distinct Taxon ◽  
Locus Classicus

Centaurea cyanomorpha, so far known only from a single plant collected in May 1926, was rediscovered and studied at its locus classicus Kara Bair, near the town of Topolovgrad (SE Bulgaria). Its taxonomic status varied in times and remained hitherto uncertain. The species has been treated as a synonym of C. pseudaxillaris, C. napulifera and C. depressa. However, a detailed examination of the type specimen and plants from the type locality, as well as additional plants from different localities indicate that C. cyanomorpha is a clearly distinct taxon and should be maintained as a separate species. Cyanus diospolitanus (≡ Centaurea diospolitana), recently described from Derventski Hills, Yambol Province (SE Bulgaria), has turned out to be identical to C. cyanomorpha and should be treated as a later heterotypic synonym of the latter. Comparisons of the key morphological characters of the close relatives C. cyanomorpha and C. pseudaxillaris and maps of their distributions are given. A new combination, Cyanus cyanomorphus comb. nov., is provided.

scholarly journals Metabolomics and DNA-Based Authentication of Two Traditional Asian Medicinal and Aromatic Species of Salvia subg. Perovskia

Cells ◽  
2021 ◽  
Vol 10 (1) ◽  
pp. 112
Author(s):  
Monika Bielecka ◽  
Bartosz Pencakowski ◽  
Marta Stafiniak ◽  
Klemens Jakubowski ◽  
Mehdi Rahimmalek ◽  
...  
Keyword(s):  
Dna Barcoding ◽  
High Performance ◽  
Carnosic Acid ◽  
Limited Information ◽  
Metabolomic Analysis ◽  
Separate Species ◽  
Flight Mass Spectrometry ◽  
Aerial Parts ◽  
Central Asian ◽  
Aromatic Species

Subgenus Perovskia of the extended genus of Salvia comprises several Central Asian medicinal and aromatic species, of which S. yangii and S. abrotanoides are the most widespread. These plants are cultivated in Europe as robust ornamentals, and several cultivars are available. However, their medicinal potential remains underutilized because of limited information about their phytochemical and genetic diversity. Thus, we combined an ultra-high performance liquid chromatography quadrupole time of flight mass spectrometry (UHPLC-QTOF-MS) based metabolomics with DNA barcoding approach based on trnH-psbA and ITS2 barcodes to clarify the relationships between these two taxa. Metabolomic analysis demonstrated that aerial parts are more similar than roots and none of the major compounds stand out as distinct. Sugiol in S. yangii leaves and carnosic acid quinone in S. abrotanoides were mostly responsible for their chemical differentiation, whereas in roots the distinction was supported by the presence of five norditerpenoids in S. yangii and two flavonoids and one norditerpenoid in S. abrotanoides. To verify the metabolomics-based differentiation, we performed DNA authentication that revealed S. yangii and S. abrotanoides to be very closely related but separate species. We demonstrated that DNA barcoding coupled with parallel LC-MS profiling constitutes a powerful tool in identification of taxonomically close Salvia species.

scholarly journals Incidence and characterisation of Bacillus cereus bacteriophages from Thua Nao, a Thai fermented soybean product

2021 ◽  
Vol 12 (1) ◽  
pp. 85-93
Author(s):  
Wallapat Phongtang ◽  
Ekachai Chukeatirote
Keyword(s):  
Bacillus Cereus ◽  
Food Industry ◽  
Pathogenic Bacteria ◽  
Morphological Analysis ◽  
Food Poisoning ◽  
Fermented Soybean ◽  
Foodborne Pathogenic Bacteria ◽  
Ph Range ◽  
Potential Use

Abstract Bacillus cereus is considered to be an important food poisoning agent causing diarrhea and vomiting. In this study, the occurrence of B. cereus bacteriophages in Thai fermented soybean products (Thua Nao) was studied using five B. cereus sensu lato indicator strains (four B. cereus strains and one B. thuringiensis strain). In a total of 26 Thua Nao samples, there were only two bacteriophages namely BaceFT01 and BaceCM02 exhibiting lytic activity against B. cereus. Morphological analysis revealed that these two bacteriophages belonged to the Myoviridae. Both phages were specific to B. cereus and not able to lyse other tested bacteria including B. licheniformis and B. subtilis. The two phages were able to survive in a pH range between 5 and 12. However, both phages were inactive either by treatment of 50°C for 2 h or exposure of UV for 2 h. It should be noted that both phages were chloroform-insensitive, however. This is the first report describing the presence of bacteriophages in Thua Nao products. The characterization of these two phages is expected to be useful in the food industry for an alternative strategy including the potential use of the phages as a biocontrol candidate against foodborne pathogenic bacteria.

scholarly journals Diversity unearthed by the estimated molecular phylogeny and ecologically quantitative characteristics of uncultured Ehrlichia bacteria in Haemaphysalis ticks, Japan

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Hongru Su ◽  
Eri Onoda ◽  
Hitoshi Tai ◽  
Hiromi Fujita ◽  
Shigetoshi Sakabe ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
16S Rrna ◽  
Core Genome ◽  
Phylogenetic Analyses ◽  
Taxonomic Status ◽  
Housekeeping Genes ◽  
Pcr Screening ◽  
Taxonomic Profiling ◽  
Quantitative Characteristics

AbstractEhrlichia species are obligatory intracellular bacteria transmitted by arthropods, and some of these species cause febrile diseases in humans and livestock. Genome sequencing has only been performed with cultured Ehrlichia species, and the taxonomic status of such ehrlichiae has been estimated by core genome-based phylogenetic analysis. However, many uncultured ehrlichiae exist in nature throughout the world, including Japan. This study aimed to conduct a molecular-based taxonomic and ecological characterization of uncultured Ehrlichia species or genotypes from ticks in Japan. We first surveyed 616 Haemaphysalis ticks by p28-PCR screening and analyzed five additional housekeeping genes (16S rRNA, groEL, gltA, ftsZ, and rpoB) from 11 p28-PCR-positive ticks. Phylogenetic analyses of the respective genes showed similar trees but with some differences. Furthermore, we found that V1 in the V1–V9 regions of Ehrlichia 16S rRNA exhibited the greatest variability. From an ecological viewpoint, the amounts of ehrlichiae in a single tick were found to equal approx. 6.3E+3 to 2.0E+6. Subsequently, core-partial-RGGFR-based phylogenetic analysis based on the concatenated sequences of the five housekeeping loci revealed six Ehrlichia genotypes, which included potentially new Ehrlichia species. Thus, our approach contributes to the taxonomic profiling and ecological quantitative analysis of uncultured or unidentified Ehrlichia species or genotypes worldwide.

Growth mechanism and characterization of ZnO nano-tubes synthesized using the hydrothermal-etching method

2009 ◽  
Vol 63 (6) ◽  
Author(s):  
Yan Li ◽  
Chuan-Sheng Liu ◽  
Yun-Ling Zou
Keyword(s):  
Room Temperature ◽  
Morphological Analysis ◽  
Diffraction Field ◽  
X Ray Diffraction ◽  
X Ray ◽  
Room Temperature Photoluminescence ◽  
Etching Method ◽  
Nano Rods ◽  
Two Stages

AbstractZnO nano-tubes (ZNTs) have been successfully synthesized via a simple hydrothermal-etching method, and characterized by X-ray diffraction, field emission scanning electron microscopy and room temperature photoluminescence measurement. The as-synthesized ZNTs have a diameter of 500 nm, wall thickness of 20–30 nm, and length of 5 µm. Intensity of the plane (0002) diffraction peak, compared with that of plane (10$$ \bar 1 $$0) of ZNTs, is obviously lower than that of ZnO nano-rods. This phenomenon can be caused by the smaller cross section of plane (0002) of the nano-tubes compared with that of other morphologies. On basis of the morphological analysis, the formation process of nano-tubes can be proposed in two stages: hydrothermal growth and reaction etching process.

scholarly journals Preliminary Characterization of Wild Grapevine Populations (Vitis vinifera ssp. sylvestris) Grown Along the Danube River

2013 ◽  
Vol 41 (2) ◽  
pp. 472 ◽  
Author(s):  
Carmen F. POPESCU ◽  
Liviu C. DEJEU ◽  
Rafael R. OCETE
Keyword(s):  
Vitis Vinifera ◽  
Morphological Analysis ◽  
Danube River ◽  
Vitis Vinifera L ◽  
Meristematic Tissue ◽  
The Danube River ◽  
Wild Grapevine ◽  
The Moment

The individuals belonging to three different groups of wild grapevines populations Vitis vinifera L. ssp. sylvestris (Gmelin) Hegi harvested along, or near the Danube River, were described by means of usual ampelographic methods. The twenty standardized descriptors used for morphological analysis revealed obvious differentiation among analyzed populations. Out of 65 individuals, a half produced flowers with separate sex and a high proportion of them were males (70%). Pollen measurements on light microscope provided information on differences in pollen size among inside wild grapevine populations of V. sylvestris with the polar length varying between 15.3 and 23 μm and the equatorial length between 15.5 and 24.4μm. The in vitro regenerative potential from meristematic tissue tested with each phenotype showed that the moment of differentiation, the aspect of proliferative structures and the rate of multiplication varied inside these wild grapevine populations, without any correlation with the location of harvesting. Our results provided valuable information about these Vitis vinifera ssp. sylvestris populations, possible to be used as starting plant material for research in general and further breeding of cultivars and grapevine rootstocks.

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