Plant Phenomics

2020 ◽  
Keyword(s):  
GigaScience ◽  
2017 ◽  
Vol 6 (11) ◽  
Author(s):  
Fernando Perez-Sanz ◽  
Pedro J Navarro ◽  
Marcos Egea-Cortines

2017 ◽  
Vol 60 (4) ◽  
pp. 285-297 ◽  
Author(s):  
Song-Lim Kim ◽  
Nita Solehati ◽  
In-Chan Choi ◽  
Kyung-Hwan Kim ◽  
Taek-Ryoun Kwon

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Md. Matiur Rahaman ◽  
Md. Asif Ahsan ◽  
Ming Chen

AbstractStatistical data-mining (DM) and machine learning (ML) are promising tools to assist in the analysis of complex dataset. In recent decades, in the precision of agricultural development, plant phenomics study is crucial for high-throughput phenotyping of local crop cultivars. Therefore, integrated or a new analytical approach is needed to deal with these phenomics data. We proposed a statistical framework for the analysis of phenomics data by integrating DM and ML methods. The most popular supervised ML methods; Linear Discriminant Analysis (LDA), Random Forest (RF), Support Vector Machine with linear (SVM-l) and radial basis (SVM-r) kernel are used for classification/prediction plant status (stress/non-stress) to validate our proposed approach. Several simulated and real plant phenotype datasets were analyzed. The results described the significant contribution of the features (selected by our proposed approach) throughout the analysis. In this study, we showed that the proposed approach removed phenotype data analysis complexity, reduced computational time of ML algorithms, and increased prediction accuracy.


2021 ◽  
Author(s):  
Jens Klump ◽  
Tim Brown ◽  
Rohan Clarke ◽  
Robert Glasgow ◽  
Steve Micklethwaite ◽  
...  

<p>Remotely Piloted Aircraft (RPA), commonly known as drones, provide sensing capabilities that address the critical scale-gap between ground- and satellite-based observations. Their versatility allows researchers to deliver near-real-time information for society.</p><p>Key to delivering RPA information is the capacity to enable researchers to systematically collect, process, manage and share RPA-borne sensor data. Importantly, this should allow vertical integration across scales and horizontal integration across different RPA deployments. However, as an emerging technology, the best practice and standards are still developing and the large data volumes collected during RPA missions can be challenging.</p><p>Australia’s Scalable Drone Cloud (ASDC) aims to coordinate and standardise how scientists from across earth, environmental and agricultural research manage, process and analyse data collected by RPA-borne sensors, by establishing best practices in managing 3D-geospatial data and aligned with the FAIR data principles.</p><p>The ASDC is building a cloud-native platform for research drone data management and analytics, driven by exemplar data management practices, data-processing pipelines, and search and discovery of drone data. The aim of the platform is to integrate sensing capabilities with easy-to-use storage, processing, visualisation and data analysis tools (including computer vision / deep learning techniques) to establish a national ecosystem for drone data management.</p><p>The ASDC is a partnership of the Monash Drone Discovery Platform, CSIRO and key National Collaborative Research Infrastructure (NCRIS) capabilities including the Australian Research Data Commons (ARDC), Australian Plant Phenomics Facility (APPF), Terrestrial Ecosystem Research Network (TERN), and AuScope.</p><p>This presentation outlines the roadmap and first proof-of-concept implementation of the ASDC.</p>


Author(s):  
Ali Zia ◽  
Jie Liang

Plant phenomics research requires different types of sensors employed to measure the physical traits of plant surface and to estimate the biomass. Of particular interests is the hyperspectral imaging device which captures wavelength indexed band images that characterize material properties of objects under study. This chapter introduces a proof of concept research that builds 3D plant model directly from hyperspectral images captured in a controlled lab environment. The method presented in this chapter allows fine structural-spectral information of an object be captured and integrated into the 3D model, which can be used to support further research and applications. The hyperspectral imaging has shown clear advantages in segmenting plant from its background and is very promising in generating comprehensive 3D plant models.


2017 ◽  
Vol 27 (15) ◽  
pp. R770-R783 ◽  
Author(s):  
François Tardieu ◽  
Llorenç Cabrera-Bosquet ◽  
Tony Pridmore ◽  
Malcolm Bennett
Keyword(s):  

2021 ◽  
Author(s):  
Patrick Hüther ◽  
Niklas Schandry ◽  
Katharina Jandrasits ◽  
Ilja Bezrukov ◽  
Claude Becker

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