scholarly journals From Player to Pawn: Viral Avirulence Factors Involved in Plant Immunity

Viruses ◽  
2021 ◽  
Vol 13 (4) ◽  
pp. 688
Author(s):  
Changjun Huang
Keyword(s):  
Gene Product ◽  
Plant Resistance ◽  
Plant Immunity ◽  
Single Type ◽  
R Gene ◽  
R Genes ◽  
Plant Pathogen Interaction ◽  
Or Gene ◽  
Almost All ◽  
Avr Gene

In the plant immune system, according to the ‘gene-for-gene’ model, a resistance (R) gene product in the plant specifically surveils a corresponding effector protein functioning as an avirulence (Avr) gene product. This system differs from other plant–pathogen interaction systems, in which plant R genes recognize a single type of gene or gene family because almost all virus genes with distinct structures and functions can also interact with R genes as Avr determinants. Thus, research conducted on viral Avr-R systems can provide a novel understanding of Avr and R gene product interactions and identify mechanisms that enable rapid co-evolution of plants and phytopathogens. In this review, we intend to provide a brief overview of virus-encoded proteins and their roles in triggering plant resistance, and we also summarize current progress in understanding plant resistance against virus Avr genes. Moreover, we present applications of Avr gene-mediated phenotyping in R gene identification and screening of segregating populations during breeding processes.

scholarly journals Recent Findings Unravel Genes and Genetic Factors Underlying Leptosphaeria maculans Resistance in Brassica napus and Its Relatives

2020 ◽  
Vol 22 (1) ◽  
pp. 313
Author(s):  
Aldrin Y. Cantila ◽  
Nur Shuhadah Mohd Saad ◽  
Junrey C. Amas ◽  
David Edwards ◽  
Jacqueline Batley
Keyword(s):  
Brassica Napus ◽  
Genetic Factors ◽  
Quantitative Resistance ◽  
Genetic Resistance ◽  
Leptosphaeria Maculans ◽  
Gene Interaction ◽  
R Gene ◽  
R Genes ◽  
Blackleg Resistance ◽  
Avr Gene

Among the Brassica oilseeds, canola (Brassica napus) is the most economically significant globally. However, its production can be limited by blackleg disease, caused by the fungal pathogen Lepstosphaeria maculans. The deployment of resistance genes has been implemented as one of the key strategies to manage the disease. Genetic resistance against blackleg comes in two forms: qualitative resistance, controlled by a single, major resistance gene (R gene), and quantitative resistance (QR), controlled by numerous, small effect loci. R-gene-mediated blackleg resistance has been extensively studied, wherein several genomic regions harbouring R genes against L. maculans have been identified and three of these genes were cloned. These studies advance our understanding of the mechanism of R gene and pathogen avirulence (Avr) gene interaction. Notably, these studies revealed a more complex interaction than originally thought. Advances in genomics help unravel these complexities, providing insights into the genes and genetic factors towards improving blackleg resistance. Here, we aim to discuss the existing R-gene-mediated resistance, make a summary of candidate R genes against the disease, and emphasise the role of players involved in the pathogenicity and resistance. The comprehensive result will allow breeders to improve resistance to L. maculans, thereby increasing yield.

The Arabidopsis Genes RPW8.1 and RPW8.2 Confer Induced Resistance to Powdery Mildew Diseases in Tobacco

2003 ◽  
Vol 16 (4) ◽  
pp. 289-294 ◽  
Author(s):  
Shunyuan Xiao ◽  
Piyavadee Charoenwattana ◽  
Lucy Holcombe ◽  
John G. Turner
Keyword(s):  
Powdery Mildew ◽  
Plant Disease Resistance ◽  
Plant Disease ◽  
Defense Responses ◽  
Gene Products ◽  
R Gene ◽  
R Genes ◽  
Plant Families ◽  
Oidium Lycopersici ◽  
Avr Gene

Plant disease resistance (R) gene products recognize pathogen avirulence (Avr) gene products and induce defense responses. It is not known if an R gene can function in different plant families, however. The Arabidopsis thaliana R genes RPW8.1 and RPW8.2 confer resistance to the powdery mildew pathogens Erysiphe orontii, E. cichoracearum, and Oidium lycopersici, which also infect plants from other families. We produced transgenic Nicotiana tabacum, N. benthamiana, and Lycopersicon esculentum plants containing RPW8.1 and RPW8.2. Transgenic N. tabacum plants had increased resistance to E. orontii and O. lycopersici, transgenic N. benthamiana plants had increased resistance to E. cichoracearum, but transgenic L. esculentum plants remained susceptible to these pathogens. The defense responses induced in transgenic N. tabacum and N. benthamiana were similar to those mediated by RPW8.1 and RPW8.2 in Arabidopsis. Apparently, RPW8.1 and RPW8.2 could be used to control powdery mildew diseases of plants from other families.

scholarly journals Avirulence (AVR) Gene-Based Diagnosis Complements Existing Pathogen Surveillance Tools for Effective Deployment of Resistance (R) Genes Against Rice Blast Disease

2017 ◽  
Vol 107 (6) ◽  
pp. 711-720 ◽  
Author(s):  
S. M. Selisana ◽  
M. J. Yanoria ◽  
B. Quime ◽  
C. Chaipanya ◽  
G. Lu ◽  
...  
Keyword(s):  
Rice Blast ◽  
Polymerase Chain Reaction Amplification ◽  
Rice Blast Disease ◽  
Blast Disease ◽  
R Gene ◽  
R Genes ◽  
Pathogen Population ◽  
Avr Gene ◽  
Avr Genes ◽  
Virulence Spectrum

Avirulence (AVR) genes in Magnaporthe oryzae, the fungal pathogen that causes the devastating rice blast disease, have been documented to be major targets subject to mutations to avoid recognition by resistance (R) genes. In this study, an AVR-gene-based diagnosis tool for determining the virulence spectrum of a rice blast pathogen population was developed and validated. A set of 77 single-spore field isolates was subjected to pathotype analysis using differential lines, each containing a single R gene, and classified into 20 virulent pathotypes, except for 4 isolates that lost pathogenicity. In all, 10 differential lines showed low frequency (<24%) of resistance whereas 8 lines showed a high frequency (>95%), inferring the effectiveness of R genes present in the respective differential lines. In addition, the haplotypes of seven AVR genes were determined by polymerase chain reaction amplification and sequencing, if applicable. The calculated frequency of different AVR genes displayed significant variations in the population. AVRPiz-t and AVR-Pii were detected in 100 and 84.9% of the isolates, respectively. Five AVR genes such as AVR-Pik-D (20.5%) and AVR-Pik-E (1.4%), AVRPiz-t (2.7%), AVR-Pita (0%), AVR-Pia (0%), and AVR1-CO39 (0%) displayed low or even zero frequency. The frequency of AVR genes correlated almost perfectly with the resistance frequency of the cognate R genes in differential lines, except for International Rice Research Institute-bred blast-resistant lines IRBLzt-T, IRBLta-K1, and IRBLkp-K60. Both genetic analysis and molecular marker validation revealed an additional R gene, most likely Pi19 or its allele, in these three differential lines. This can explain the spuriously higher resistance frequency of each target R gene based on conventional pathotyping. This study demonstrates that AVR-gene-based diagnosis provides a precise, R-gene-specific, and differential line-free assessment method that can be used for determining the virulence spectrum of a rice blast pathogen population and for predicting the effectiveness of target R genes in rice varieties.

scholarly journals Isolation and Characterization Of Rice R Genes: Evidence for Distinct Evolutionary Paths in Rice and Maize

Genetics ◽  
1996 ◽  
Vol 142 (3) ◽  
pp. 1021-1031 ◽  
Author(s):  
Jianping Hu ◽  
Beth Anderson ◽  
Susan R Wessler
Keyword(s):  
Gene Family ◽  
Gene Families ◽  
Chromosome 1 ◽  
R Gene ◽  
R Genes ◽  
Helix Loop Helix ◽  
Isolation And Characterization ◽  
Undetermined Function ◽  
Evolutionary Paths

Abstract R and B genes and their homologues encode basic helix-loop-helix (bHLH) transcriptional activators that regulate the anthocyanin biosynthetic pathway in flowering plants. In maize, R/B genes comprise a very small gene family whose organization reflects the unique evolutionary history and genome architecture of maize. To know whether the organization of the R gene family could provide information about the origins of the distantly related grass rice, we characterized members of the R gene family from rice Oryza sativa. Despite being a true diploid, O. sativa has at least two R genes. An active homologue (Ra) with extensive homology with other R genes is located at a position on chromosome 4 previously shown to be in synteny with regions of maize chromosomes 2 and 10 that contain the B and R loci, respectively. A second rice R gene (Rb) of undetermined function was identified on chromosome 1 and found to be present only in rice species with AA genomes. All non-AA species have but one R gene that is Ra-like. These data suggest that the common ancestor shared by maize and rice had a single R gene and that the small R gene families of grasses have arisen recently and independently.

scholarly journals Multiyear Evaluation of the Durability of the Resistance Conferred by Ma and RMia Genes to Meloidogyne incognita in Prunus Under Controlled Conditions

2013 ◽  
Vol 103 (8) ◽  
pp. 833-840 ◽  
Author(s):  
Samira Khallouk ◽  
Roger Voisin ◽  
Ulysse Portier ◽  
Joël Polidori ◽  
Cyril Van Ghelder ◽  
...  
Keyword(s):  
Meloidogyne Incognita ◽  
Economic Losses ◽  
R Gene ◽  
R Genes ◽  
Tomato Plants ◽  
Controlled Conditions ◽  
Meloidogyne Spp ◽  
Resistance Breakdown ◽  
Susceptible Tomato ◽  
Prunus Spp

Root-knot nematodes (RKNs) (Meloidogyne spp.) are highly polyphagous pests that parasitize Prunus crops in Mediterranean climates. Breeding for RKN-resistant Prunus cultivars, as an alternative to the now-banned use of nematicides, is a real challenge, because the perennial nature of these trees increases the risk of resistance breakdown. The Ma plum resistance (R) gene, with a complete spectrum, and the RMia peach R gene, with a more restricted spectrum, both provide total control of Meloidogyne incognita, the model parthenogenetic species of the genus and the most important RKN in terms of economic losses. We investigated the durability of the resistance to this nematode conferred by these genes, comparing the results obtained with those for the tomato Mi-1 reference gene. In multiyear experiments, we applied a high and continuous nematode inoculum pressure by cultivating nematode-infested susceptible tomato plants with either Prunus accessions carrying Ma or RMia R genes, or with resistant tomato plants carrying the Mi-1 gene. Suitable conditions for Prunus development were achieved by carrying out the studies in a glasshouse, in controlled conditions allowing a short winter leaf fall and dormancy. We first assessed the plum accession ‘P.2175’, which is heterozygous for the Ma gene, in two successive 2-year evaluations, for resistance to two M. incognita isolates. Whatever the isolate used, no nematodes reproducing on P.2175 were detected, whereas galls and nematodes reproducing on tomato plants carrying Mi-1 were observed. In a second experiment with the most aggressive isolate, interspecific full-sib material (P.2175 × [‘Garfi’ almond × ‘Nemared’ peach]), carrying either Ma or RMia (from Nemared) or both (in the heterozygous state) or neither of these genes, was evaluated for 4 years. No virulent nematodes developed on Prunus spp. carrying R genes, whereas galling and virulent individuals were observed on Mi-1-resistant tomato plants. Thus, the resistance to M. incognita conferred by Ma in Prunus material in both a pure-plum and an interspecific genetic background, or by RMia in an interspecific background, appears to be durable, highlighting the value of these two genes for the creation of Prunus rootstock material.

Characterization of a factor that stimulates hydrolysis of GTP bound to ras gene product p21 (GTPase-activating protein) and correlation of its activity to cell density

1988 ◽  
Vol 8 (10) ◽  
pp. 4169-4173
Author(s):  
M Hoshino ◽  
M Kawakita ◽  
S Hattori
Keyword(s):  
Gene Product ◽  
Cell Density ◽  
Cultured Cells ◽  
Specific Activity ◽  
Gtpase Activating Protein ◽  
Ras Gene ◽  
Cell Extracts ◽  
Mouse Tissues ◽  
Almost All ◽  
Hydrolysis Of

The postmicrosomal fraction of the extract from NIH 3T3 and BALB/c 3T3 cells stimulated the hydrolysis of GTP bound to H-ras gene product p21 by severalfold. The stimulation was observed with normal p21 but not with p21 with valine as the 12th residue. This specificity is similar to that of GTPase-activating protein (GAP) for N-ras p21 described by M. Trahey and F. McCormick (Science 238:542-545, 1987). Consistent with this specificity, analysis of p21-bound nucleotides in living cells revealed that almost all normal p21 bound GDP, whereas oncogenic mutant p21s bound both GTP and GDP. Similar activity was also found in various mouse tissues, with brain tissue showing the highest specific activity. When cell extracts were prepared from cultured cells, there was a linear relationship between GAP activity and cell density. These results suggest the factor is involved in the regulation of cell proliferation.

scholarly journals A unique pathway of double-strand break repair operates in tandemly repeated genes.

1991 ◽  
Vol 11 (3) ◽  
pp. 1222-1231 ◽  
Author(s):  
B A Ozenberger ◽  
G S Roeder
Keyword(s):  
Gene Product ◽  
Gene Array ◽  
Strand Break ◽  
Double Strand Break ◽  
Dsb Repair ◽  
Yeast Saccharomyces Cerevisiae ◽  
Spontaneous Recombination ◽  
Genome Recombination ◽  
Repeat Units ◽  
Almost All

The RAD52 gene product of the yeast Saccharomyces cerevisiae is required for most spontaneous recombination and almost all double-strand break (DSB) repair. In contrast to recombination elsewhere in the genome, recombination in the ribosomal DNA (rDNA) array is RAD52 independent. To determine the fate of a DSB in the rDNA gene array, a cut site for the HO endonuclease was inserted into the rDNA in a strain containing an inducible HO gene. DSBs were efficiently repaired at this site, even in the absence of the RAD52 gene product. Efficient RAD52-independent DSB repair was also observed at another tandem gene array, CUP1, consisting of 18 repeat units. However, in a smaller CUP1 array, consisting of only three units, most DSBs (ca. 80%) were not repaired and resulted in cell death. All RAD52-independent DSB repair events examined resulted in the loss of one or more repeat units. We propose a model for DSB repair in repeated sequences involving the generation of single-stranded tails followed by reannealing.

scholarly journals Worldwide gene pool of fiber flax at VIR, and breeding of rust-resistant varieties

2020 ◽  
Vol 181 (2) ◽  
pp. 57-64
Author(s):  
S. N. Kutuzova ◽  
E. A. Porokhovinova ◽  
N. B. Brutch ◽  
A. V. Pavlov
Keyword(s):  
Rust Resistance ◽  
Source Material ◽  
Fiber Content ◽  
High Yield ◽  
Present Moment ◽  
R Genes ◽  
Fiber Flax ◽  
High Fiber ◽  
Flax Cultivar ◽  
Almost All

Background. There are strict requirements for a modern flax cultivar. It must have a whole set of valuable characters, including rust resistance.Materials and methods. The flax collection of 2485 accessions held by VIR was evaluated using artificial provocative infection.Results. Almost all domestic and foreign accessions and varieties collected before 1957 were highly or extremely susceptible to rust. Five Russian kryazhs1 and cv. ‘GDS-3’ developed at VIR were found to retain rust resistance up to the present moment. Lines derived from them and from three foreign varieties, with an identified number of the original effective R genes, were submitted to breeders. Nineteen donors with a set of economically useful traits, analogous to cvs. ‘Orshansky 2’ and ‘Prizyv 81’ and carrying the same genes, were produced and distributed to breeders. The VIR collection holds 10 donors of rust resistance with high fiber content developed at the All-Russian Research Institute of Flax. Some donors of resistance to other diseases released by the same Institute also possess high rust resistance, thus forming a rich stock of source material. The first cultivar relatively resistant to rust (‘L-1120’) was released in 1951. Possessing polygenic resistance, it was also resistant to Fusarium wilt and lodging, so it was widely used for breeding other cultivars with similar characteristics. As their cultivation expanded, the harvest losses caused by rust dropped. The first rust-resistant cultivar with oligogenic resistance (‘Tomsky 16’) appeared in 1990. By now, many cultivars protected by R genes of rust resistance have been developed. They combine this trait with resistance to Fusarium and lodging, high yield, and high fiber content. Flax rust incidence is not a problem anymore.Conclusion. Plant breeders have at their disposal a rich stock of source material preserved in the VIR collection to produce resistant flax cultivars. The use of rust resistance donors in hybridization cannot disrupt the most important properties of a cultivar.

scholarly journals Facile synthesis of novel dithioacetal–naphthalene derivatives as potential activators for plant resistance induction

RSC Advances ◽  
2019 ◽  
Vol 9 (56) ◽  
pp. 32375-32381
Author(s):  
R. J. Ji ◽  
W. M. Shi ◽  
D. Y. Tian ◽  
G. P. Zhang ◽  
H. Wang
Keyword(s):  
Plant Resistance ◽  
Plant Immunity ◽  
Facile Synthesis ◽  
Naphthalene Derivatives ◽  
Resistance Induction

In this paper, a series of novel dithioacetal–naphthalenes were designed and synthesized for plant immunity.

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