scholarly journals Zoonotic Potential of Influenza A Viruses: A Comprehensive Overview

Viruses ◽  
2018 ◽  
Vol 10 (9) ◽  
pp. 497 ◽  
Author(s):  
Ahmed Mostafa ◽  
Elsayed Abdelwhab ◽  
Thomas Mettenleiter ◽  
Stephan Pleschka
Keyword(s):  
Genetic Diversity ◽  
Global Health ◽  
Influenza A ◽  
Viral Evolution ◽  
Zoonotic Potential ◽  
Influenza A Viruses ◽  
Comprehensive Overview ◽  
High Genetic Diversity ◽  
Human Interface ◽  
Animal Hosts

Influenza A viruses (IAVs) possess a great zoonotic potential as they are able to infect different avian and mammalian animal hosts, from which they can be transmitted to humans. This is based on the ability of IAV to gradually change their genome by mutation or even reassemble their genome segments during co-infection of the host cell with different IAV strains, resulting in a high genetic diversity. Variants of circulating or newly emerging IAVs continue to trigger global health threats annually for both humans and animals. Here, we provide an introduction on IAVs, highlighting the mechanisms of viral evolution, the host spectrum, and the animal/human interface. Pathogenicity determinants of IAVs in mammals, with special emphasis on newly emerging IAVs with pandemic potential, are discussed. Finally, an overview is provided on various approaches for the prevention of human IAV infections.

scholarly journals Subtype Characterization and Zoonotic Potential of Cryptosporidium felis in Cats in Guangdong and Shanghai, China

Pathogens ◽  
2021 ◽  
Vol 10 (2) ◽  
pp. 89
Author(s):  
Jiayu Li ◽  
Fuxian Yang ◽  
Ruobing Liang ◽  
Sheng Guo ◽  
Yaqiong Guo ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Phylogenetic Analysis ◽  
Genetic Characterization ◽  
Zoonotic Potential ◽  
Common Occurrence ◽  
High Genetic Diversity ◽  
Gp60 Gene ◽  
The Common ◽  
Subtyping Tool

Cryptosporidiumfelis is an important cause of feline and human cryptosporidiosis. However, the transmission of this pathogen between humans and cats remains controversial, partially due to a lack of genetic characterization of isolates from cats. The present study was conducted to examine the genetic diversity of C. felis in cats in China and to assess their potential zoonotic transmission. A newly developed subtyping tool based on a sequence analysis of the 60-kDa glycoprotein (gp60) gene was employed to identify the subtypes of 30 cat-derived C. felis isolates from Guangdong and Shanghai. Altogether, 20 C. felis isolates were successfully subtyped. The results of the sequence alignment showed a high genetic diversity, with 13 novel subtypes and 2 known subtypes of the XIXa subtype family being identified. The known subtypes were previously detected in humans, while some of the subtypes formed well-supported subclusters with human-derived subtypes from other countries in a phylogenetic analysis of the gp60 sequences. The results of this study confirmed the high genetic diversity of the XIXa subtype family of C. felis. The common occurrence of this subtype family in both humans and cats suggests that there could be cross-species transmission of C. felis.

scholarly journals Assessing Host-Virus Codivergence for Close Relatives of Merkel Cell Polyomavirus Infecting African Great Apes

2016 ◽  
Vol 90 (19) ◽  
pp. 8531-8541 ◽  
Author(s):  
Nadège F. Madinda ◽  
Bernhard Ehlers ◽  
Joel O. Wertheim ◽  
Chantal Akoua-Koffi ◽  
Richard A. Bergl ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Host Specificity ◽  
Viral Evolution ◽  
Great Apes ◽  
Merkel Cell Polyomavirus ◽  
Merkel Cell ◽  
Human Pathogens ◽  
Content Type ◽  
Animal Hosts ◽  
African Great Apes

ABSTRACTIt has long been hypothesized that polyomaviruses (PyV; familyPolyomaviridae) codiverged with their animal hosts. In contrast, recent analyses suggested that codivergence may only marginally influence the evolution of PyV. We reassess this question by focusing on a single lineage of PyV infecting hominine hosts, the Merkel cell polyomavirus (MCPyV) lineage. By characterizing the genetic diversity of these viruses in seven African great ape taxa, we show that they exhibit very strong host specificity. Reconciliation analyses identify more codivergence than noncodivergence events. In addition, we find that a number of host and PyV divergence events are synchronous. Collectively, our results support codivergence as the dominant process at play during the evolution of the MCPyV lineage. More generally, our results add to the growing body of evidence suggesting an ancient and stable association of PyV and their animal hosts.IMPORTANCEThe processes involved in viral evolution and the interaction of viruses with their hosts are of great scientific interest and public health relevance. It has long been thought that the genetic diversity of double-stranded DNA viruses was generated over long periods of time, similar to typical host evolutionary timescales. This was also hypothesized for polyomaviruses (familyPolyomaviridae), a group comprising several human pathogens, but this remains a point of controversy. Here, we investigate this question by focusing on a single lineage of polyomaviruses that infect both humans and their closest relatives, the African great apes. We show that these viruses exhibit considerable host specificity and that their evolution largely mirrors that of their hosts, suggesting that codivergence with their hosts played a major role in their diversification. Our results provide statistical evidence in favor of an association of polyomaviruses and their hosts over millions of years.

scholarly journals Characterization of Subtype H6 Avian Influenza A Viruses Isolated From Wild Birds in Poyang Lake, China

2021 ◽  
Vol 8 ◽  
Author(s):  
Zhimin Wan ◽  
Qiuqi Kan ◽  
Zhehong Zhao ◽  
Hongxia Shao ◽  
Thomas J. Deliberto ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Avian Influenza ◽  
Mammalian Cells ◽  
Influenza A ◽  
Poyang Lake ◽  
Wild Birds ◽  
Mouse Lung ◽  
Influenza A Viruses ◽  
Domestic Poultry ◽  
History Of

Subtype H6 avian influenza A viruses (IAVs) are enzootic and genetically diverse in both domestic poultry and wild waterfowl and may cause spillovers in both pigs and humans. Thus, it is important to understand the genetic diversity of H6 IAVs in birds and their zoonotic potential. Compared with that in domestic poultry, the genetic diversity of H6 viruses in wild birds in China has not been well-understood. In this study, five H6 viruses were isolated from wild birds in Poyang Lake, China, and genetic analyses showed that these isolates are clustered into four genotypes associated with reassortments among avian IAVs from domestic poultry and wild birds in China and those from Eurasia and North America and that these viruses exhibited distinct phenotypes in growth kinetics analyses with avian and mammalian cells lines and in mouse challenge experiments. Of interest is that two H6 isolates from the Eurasian teal replicated effectively in the mouse lung without prior adaptation, whereas the other three did not. Our study suggested that there are variations in the mammalian viral replication efficiency phenotypic among genetically diverse H6 IAVs in wild birds and that both intra- and inter-continental movements of IAVs through wild bird migration may facilitate the emergence of novel H6 IAV reassortants with the potential for replicating in mammals, including humans. Continued surveillance to monitor the diversity of H6 IAVs in wild birds is necessary to increase our understanding of the natural history of IAVs.

scholarly journals Correction: Impact of Pregnancy on Intra-Host Genetic Diversity of Influenza A Viruses in Hospitalised Women: A Retrospective Cohort Study. J. Clin. Med. 2020, 9, 1974

2019 ◽  
Vol 9 (1) ◽  
pp. 58
Author(s):  
Gregory Destras ◽  
Maxime Pichon ◽  
Bruno Simon ◽  
Martine Valette ◽  
Vanessa Escuret ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Cohort Study ◽  
Retrospective Cohort Study ◽  
Retrospective Cohort ◽  
Influenza A ◽  
Influenza A Viruses ◽  
Host Genetic

The authors wish to make the following corrections to this paper [...]

scholarly journals The Genetic Diversity of Influenza A Viruses in Wild Birds in Peru

PLoS ONE ◽  
2016 ◽  
Vol 11 (1) ◽  
pp. e0146059 ◽  
Author(s):  
Martha I. Nelson ◽  
Simon Pollett ◽  
Bruno Ghersi ◽  
Maria Silva ◽  
Mark P. Simons ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Influenza A ◽  
Wild Birds ◽  
Influenza A Viruses

scholarly journals Human Clade 2.3.4.4 A/H5N6 Influenza Virus Lacks Mammalian Adaptation Markers and Does Not Transmit via the Airborne Route between Ferrets

mSphere ◽  
2018 ◽  
Vol 3 (1) ◽  
Author(s):  
Sander Herfst ◽  
Chris K. P. Mok ◽  
Judith M. A. van den Brand ◽  
Stefan van der Vliet ◽  
Miruna E. Rosu ◽  
...  
Keyword(s):  
Public Health ◽  
Genetic Diversity ◽  
Influenza A ◽  
Severe Disease ◽  
Risk Assessments ◽  
Influenza A Viruses ◽  
Species Barrier ◽  
Public Health Threat

Avian influenza A viruses are a threat to human health, as they cross the species barrier and infect humans occasionally, often with severe outcome. The antigenic and genetic diversity of A/H5 viruses from the A/goose/Guangdong/1/96 lineage is increasing, due to continued circulation and reassortment in poultry, posing a constant risk for public health and requiring regular risk assessments. Here we performed an in-depth characterization of the properties of the newly emerged zoonotic A/H5N6 virusin vitroand in ferrets. The lack of airborne transmission in the ferret model indicates that A/H5N6 virus does not pose a direct public health threat, despite the fact that it can replicate to high titers throughout the respiratory tracts of ferrets and cause more severe disease than other clade 2.3.4.4 viruses.

scholarly journals Influenza B viruses exhibit lower within-host diversity than influenza A viruses in human hosts

2019 ◽  
Author(s):  
Andrew L. Valesano ◽  
William J. Fitzsimmons ◽  
John T. McCrone ◽  
Joshua G. Petrie ◽  
Arnold S. Monto ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Influenza A Virus ◽  
Influenza A ◽  
Evolutionary Dynamics ◽  
Influenza Viruses ◽  
Influenza B Virus ◽  
Influenza B ◽  
Influenza A Viruses ◽  
Community Based ◽  
B Virus

AbstractInfluenza B virus undergoes seasonal antigenic drift more slowly than influenza A, but the reasons for this difference are unclear. While the evolutionary dynamics of influenza viruses play out globally, they are fundamentally driven by mutation, reassortment, drift, and selection within individual hosts. These processes have recently been described for influenza A virus, but little is known about the evolutionary dynamics of influenza B virus (IBV) at the level of individual infections and transmission events. Here we define the within-host evolutionary dynamics of influenza B virus by sequencing virus populations from naturally-infected individuals enrolled in a prospective, community-based cohort over 8176 person-seasons of observation. Through analysis of high depth-of-coverage sequencing data from samples from 91 individuals with influenza B, we find that influenza B virus accumulates lower genetic diversity than previously observed for influenza A virus during acute infections. Consistent with studies of influenza A viruses, the within-host evolution of influenza B viruses is characterized by purifying selection and the general absence of widespread positive selection of within-host variants. Analysis of shared genetic diversity across 15 sequence-validated transmission pairs suggests that IBV experiences a tight transmission bottleneck similar to that of influenza A virus. These patterns of local-scale evolution are consistent with influenza B virus’ slower global evolutionary rate.ImportanceThe evolution of influenza virus is a significant public health problem and necessitates the annual evaluation of influenza vaccine formulation to keep pace with viral escape from herd immunity. Influenza B virus is a serious health concern for children, in particular, yet remains understudied compared to influenza A virus. Influenza B virus evolves more slowly than influenza A, but the factors underlying this are not completely understood. We studied how the within-host diversity of influenza B virus relates to its global evolution by sequencing viruses from a community-based cohort. We found that influenza B virus populations have lower within-host genetic diversity than influenza A virus and experience a tight genetic bottleneck during transmission. Our work provides insights into the varying dynamics of influenza viruses in human infection.

scholarly journals Analysis of the genetic diversity of influenza A viruses using next-generation DNA sequencing

BMC Genomics ◽  
2015 ◽  
Vol 16 (1) ◽  
pp. 79 ◽  
Author(s):  
Silvie Van den Hoecke ◽  
Judith Verhelst ◽  
Marnik Vuylsteke ◽  
Xavier Saelens
Keyword(s):  
Genetic Diversity ◽  
Dna Sequencing ◽  
Influenza A ◽  
Next Generation ◽  
Influenza A Viruses ◽  
Next Generation Dna Sequencing

scholarly journals Comparison of the Mutation Rates of Human Influenza A and B Viruses

2006 ◽  
Vol 80 (7) ◽  
pp. 3675-3678 ◽  
Author(s):  
Eri Nobusawa ◽  
Katsuhiko Sato
Keyword(s):  
Genetic Diversity ◽  
Mutation Rate ◽  
Influenza A ◽  
Mdck Cells ◽  
Evolutionary Rates ◽  
Mutation Rates ◽  
Influenza B ◽  
Human Influenza ◽  
Influenza A Viruses ◽  
Infectious Cycle

ABSTRACT Human influenza A viruses evolve more rapidly than influenza B viruses. To clarify the cause of this difference, we have evaluated the mutation rate of the nonstructural gene as revealed by the genetic diversity observed during the growth of individual plaques in MDCK cells. Six plaques were studied, representing two strains each of type A and B viruses. A total of 813,663 nucleotides were sequenced, giving rates of 2.0 × 10−6 and 0.6 × 10−6 mutations per site per infectious cycle, which, when extended to 1 year, agree well with the published annual evolutionary rates.

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