scholarly journals Deep Learning Applied to Phenotyping of Biomass in Forages with UAV-Based RGB Imagery

Sensors ◽  
2020 ◽  
Vol 20 (17) ◽  
pp. 4802 ◽  
Author(s):  
Wellington Castro ◽  
José Marcato Junior ◽  
Caio Polidoro ◽  
Lucas Prado Osco ◽  
Wesley Gonçalves ◽  
...  
Keyword(s):  
Deep Learning ◽  
Data Augmentation ◽  
Biomass Yield ◽  
Absolute Error ◽  
Grass Species ◽  
Biomass Estimation ◽  
Panicum Maximum ◽  
Breeding Populations ◽  
Aerial Vehicle ◽  
High Throughput Phenotyping

Monitoring biomass of forages in experimental plots and livestock farms is a time-consuming, expensive, and biased task. Thus, non-destructive, accurate, precise, and quick phenotyping strategies for biomass yield are needed. To promote high-throughput phenotyping in forages, we propose and evaluate the use of deep learning-based methods and UAV (Unmanned Aerial Vehicle)-based RGB images to estimate the value of biomass yield by different genotypes of the forage grass species Panicum maximum Jacq. Experiments were conducted in the Brazilian Cerrado with 110 genotypes with three replications, totaling 330 plots. Two regression models based on Convolutional Neural Networks (CNNs) named AlexNet and ResNet18 were evaluated, and compared to VGGNet—adopted in previous work in the same thematic for other grass species. The predictions returned by the models reached a correlation of 0.88 and a mean absolute error of 12.98% using AlexNet considering pre-training and data augmentation. This proposal may contribute to forage biomass estimation in breeding populations and livestock areas, as well as to reduce the labor in the field.

scholarly journals Mapping Productivity and Essential Biophysical Parameters of Cultivated Tropical Grasslands from Sentinel-2 Imagery

Agronomy ◽  
2020 ◽  
Vol 10 (5) ◽  
pp. 711
Author(s):  
Amparo Cisneros ◽  
Peterson Fiorio ◽  
Patricia Menezes ◽  
Nieves Pasqualotto ◽  
Shari Van Wittenberghe ◽  
...  
Keyword(s):  
Vegetation Indices ◽  
Agricultural Science ◽  
Grass Species ◽  
Biomass Estimation ◽  
Panicum Maximum ◽  
Biophysical Parameters ◽  
Area Index ◽  
Tropical Grasslands ◽  
Urochloa Brizantha ◽  
Sentinel 2

Nitrogen (N) is the main nutrient element that maintains productivity in forages; it is inextricably linked to dry matter increase and plant support capacity. In recent years, high spectral and spatial resolution remote sensors, e.g., the European Space Agency (ESA)’s Sentinel satellite missions, have become freely available for agricultural science, and have proven to be powerful monitoring tools. The use of vegetation indices has been essential for crop monitoring and biomass estimation models. The objective of this work is to test and demonstrate the applicability of different vegetation indices to estimate the biomass productivity, the foliar nitrogen content (FNC), the plant height and the leaf area index (LAI) of several tropical grasslands species submitted to different nitrogen (N) rates in an experimental area of São Paulo, Brazil. Field reflectance data of Panicum maximum and Urochloa brizantha species’ cultivars were taken and convoluted to the Sentinel-2 satellite bands. Subsequently, different vegetation indices (Normalized Difference Vegetation Index (NDI), Three Band Index (TBI), Difference light Height (DLH), Three Band Dall’Olmo (DO), and Normalized Area Over reflectance Curve (NAOC)) were tested for the experimental grassland areas, and composed of Urochloa decumbens and Urochloa brizantha grass species, which were sampled and destructively analyzed. Our results show the use of different relevant Sentinel-2 bands in the visible (VIS)–near infrared (NIR) regions for the estimation of the different biophysical parameters. The FNC obtained the best correlation for the TBI index combining blue, green and red bands with a determination coefficient (R2) of 0.38 and Root Mean Square Error (RMSE) of 3.4 g kg−1. The estimation of grassland productivity based on red-edge and NIR bands showed a R2 = 0.54 and a RMSE = 1800 kg ha−1. For the LAI, the best index was the NAOC (R2 = 0.57 and RMSE = 1.4 m2 m−2). High values of FNC, productivity and LAI based on different sets of Sentinel-2 bands were consistently obtained for areas under N fertilization.

scholarly journals Analysis on the Impact of Data Augmentation on Target Recognition for UAV-Based Transmission Line Inspection

Complexity ◽  
2020 ◽  
Vol 2020 ◽  
pp. 1-11
Author(s):  
Chunhe Song ◽  
Wenxiang Xu ◽  
Zhongfeng Wang ◽  
Shimao Yu ◽  
Peng Zeng ◽  
...  
Keyword(s):  
Deep Learning ◽  
Transmission Line ◽  
Data Augmentation ◽  
Target Recognition ◽  
Histogram Equalization ◽  
Training Samples ◽  
Aerial Vehicle ◽  
Gaussian Blur ◽  
Model Training ◽  
The Impact

Target recognition is one of the core tasks of transmission line inspection based on Unmanned Aerial Vehicle (UAV), and at present plenty of deep learning-based methods have been developed for it. To enhance the generalization ability of the recognition models, a huge number of training samples are needed to cover most of all possible situations. However, due to the complexity of the environmental conditions and targets, and the limitations of images’ collection and annotation, the samples usually are insufficient when training a deep learning model for target recognition, which is one of the main factors reducing the performance of the model. To overcome this issue, some data augmentation methods have been developed to generate additional samples for model training. Although these methods have been widely used, currently there is no quantitative study on the impact of the data augmentation methods on target recognition. In this paper, taking insulator strings as the target, the impact of a series of widely used data augmentation methods on the accuracy of target recognition is studied, including histogram equalization, Gaussian blur, random translation, scaling, cutout, and rotation. Extensive tests are carried out to verify the impact of the augmented samples in the training set, the test set, or the both. Experimental results show that data augmentation plays an important role in improving the accuracy of recognition models, in which the impacts of the data augmentation methods such as Gaussian blur, scaling, and rotation are significant.

Levenshtein Augmentation Improves Performance of SMILES Based Deep-Learning Synthesis Prediction

2020 ◽  
Author(s):  
Dean Sumner ◽  
Jiazhen He ◽  
Amol Thakkar ◽  
Ola Engkvist ◽  
Esben Jannik Bjerrum
Keyword(s):  
Neural Networks ◽  
Pattern Recognition ◽  
Deep Learning ◽  
Recurrent Neural Networks ◽  
Data Augmentation ◽  
State Of The Art ◽  
Sequence Similarity ◽  
Learning Models ◽  
Underlying Network

<p>SMILES randomization, a form of data augmentation, has previously been shown to increase the performance of deep learning models compared to non-augmented baselines. Here, we propose a novel data augmentation method we call “Levenshtein augmentation” which considers local SMILES sub-sequence similarity between reactants and their respective products when creating training pairs. The performance of Levenshtein augmentation was tested using two state of the art models - transformer and sequence-to-sequence based recurrent neural networks with attention. Levenshtein augmentation demonstrated an increase performance over non-augmented, and conventionally SMILES randomization augmented data when used for training of baseline models. Furthermore, Levenshtein augmentation seemingly results in what we define as <i>attentional gain </i>– an enhancement in the pattern recognition capabilities of the underlying network to molecular motifs.</p>

A Deep Learning based Arabic Script Recognition System: Benchmark on KHAT

2020 ◽  
Vol 17 (3) ◽  
pp. 299-305 ◽  
Author(s):  
Riaz Ahmad ◽  
Saeeda Naz ◽  
Muhammad Afzal ◽  
Sheikh Rashid ◽  
Marcus Liwicki ◽  
...  
Keyword(s):  
Deep Learning ◽  
Character Recognition ◽  
Data Augmentation ◽  
Short Term Memory ◽  
Recognition System ◽  
Learning Approach ◽  
Arabic Text ◽  
Data Set ◽  
Processing Step ◽  
Handwritten Arabic

This paper presents a deep learning benchmark on a complex dataset known as KFUPM Handwritten Arabic TexT (KHATT). The KHATT data-set consists of complex patterns of handwritten Arabic text-lines. This paper contributes mainly in three aspects i.e., (1) pre-processing, (2) deep learning based approach, and (3) data-augmentation. The pre-processing step includes pruning of white extra spaces plus de-skewing the skewed text-lines. We deploy a deep learning approach based on Multi-Dimensional Long Short-Term Memory (MDLSTM) networks and Connectionist Temporal Classification (CTC). The MDLSTM has the advantage of scanning the Arabic text-lines in all directions (horizontal and vertical) to cover dots, diacritics, strokes and fine inflammation. The data-augmentation with a deep learning approach proves to achieve better and promising improvement in results by gaining 80.02% Character Recognition (CR) over 75.08% as baseline.

scholarly journals Application of Deep Learning in Integrated Pest Management: A Real-Time System for Detection and Diagnosis of Oilseed Rape Pests

2019 ◽  
Vol 2019 ◽  
pp. 1-14 ◽  
Author(s):  
Yong He ◽  
Hong Zeng ◽  
Yangyang Fan ◽  
Shuaisheng Ji ◽  
Jianjian Wu
Keyword(s):  
Deep Learning ◽  
Integrated Pest Management ◽  
Pest Management ◽  
Real Time ◽  
Oilseed Rape ◽  
Data Augmentation ◽  
Low Cost ◽  
Response Speed ◽  
Original Model ◽  
Real Time System

In this paper, we proposed an approach to detect oilseed rape pests based on deep learning, which improves the mean average precision (mAP) to 77.14%; the result increased by 9.7% with the original model. We adopt this model to mobile platform to let every farmer able to use this program, which will diagnose pests in real time and provide suggestions on pest controlling. We designed an oilseed rape pest imaging database with 12 typical oilseed rape pests and compared the performance of five models, SSD w/Inception is chosen as the optimal model. Moreover, for the purpose of the high mAP, we have used data augmentation (DA) and added a dropout layer. The experiments are performed on the Android application we developed, and the result shows that our approach surpasses the original model obviously and is helpful for integrated pest management. This application has improved environmental adaptability, response speed, and accuracy by contrast with the past works and has the advantage of low cost and simple operation, which are suitable for the pest monitoring mission of drones and Internet of Things (IoT).

scholarly journals A Review of Deep Learning-Based Contactless Heart Rate Measurement Methods

Sensors ◽  
2021 ◽  
Vol 21 (11) ◽  
pp. 3719
Author(s):  
Aoxin Ni ◽  
Arian Azarang ◽  
Nasser Kehtarnavaz
Keyword(s):  
Heart Rate ◽  
Deep Learning ◽  
Mean Absolute Error ◽  
Absolute Error ◽  
Video Camera ◽  
Measurement Methods ◽  
Rate Measurement ◽  
Learning Methods ◽  
The Public ◽  
Heart Rate Measurement

The interest in contactless or remote heart rate measurement has been steadily growing in healthcare and sports applications. Contactless methods involve the utilization of a video camera and image processing algorithms. Recently, deep learning methods have been used to improve the performance of conventional contactless methods for heart rate measurement. After providing a review of the related literature, a comparison of the deep learning methods whose codes are publicly available is conducted in this paper. The public domain UBFC dataset is used to compare the performance of these deep learning methods for heart rate measurement. The results obtained show that the deep learning method PhysNet generates the best heart rate measurement outcome among these methods, with a mean absolute error value of 2.57 beats per minute and a mean square error value of 7.56 beats per minute.

scholarly journals Evaluation of the feasibility of explainable computer-aided detection of cardiomegaly on chest radiographs using deep learning

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Mu Sook Lee ◽  
Yong Soo Kim ◽  
Minki Kim ◽  
Muhammad Usman ◽  
Shi Sub Byon ◽  
...  
Keyword(s):  
Deep Learning ◽  
Diagnostic Performance ◽  
Absolute Error ◽  
Training Dataset ◽  
Computer Aided Detection ◽  
Test Dataset ◽  
Cardiothoracic Ratio ◽  
Computer Aided ◽  
Chest X Ray ◽  
Public Datasets

AbstractWe examined the feasibility of explainable computer-aided detection of cardiomegaly in routine clinical practice using segmentation-based methods. Overall, 793 retrospectively acquired posterior–anterior (PA) chest X-ray images (CXRs) of 793 patients were used to train deep learning (DL) models for lung and heart segmentation. The training dataset included PA CXRs from two public datasets and in-house PA CXRs. Two fully automated segmentation-based methods using state-of-the-art DL models for lung and heart segmentation were developed. The diagnostic performance was assessed and the reliability of the automatic cardiothoracic ratio (CTR) calculation was determined using the mean absolute error and paired t-test. The effects of thoracic pathological conditions on performance were assessed using subgroup analysis. One thousand PA CXRs of 1000 patients (480 men, 520 women; mean age 63 ± 23 years) were included. The CTR values derived from the DL models and diagnostic performance exhibited excellent agreement with reference standards for the whole test dataset. Performance of segmentation-based methods differed based on thoracic conditions. When tested using CXRs with lesions obscuring heart borders, the performance was lower than that for other thoracic pathological findings. Thus, segmentation-based methods using DL could detect cardiomegaly; however, the feasibility of computer-aided detection of cardiomegaly without human intervention was limited.

scholarly journals Data augmentation for computed tomography angiography via synthetic image generation and neural domain adaptation

2020 ◽  
Vol 6 (1) ◽  
Author(s):  
Malte Seemann ◽  
Lennart Bargsten ◽  
Alexander Schlaefer
Keyword(s):  
Computed Tomography ◽  
Neural Networks ◽  
Deep Learning ◽  
Medical Imaging ◽  
Computed Tomography Angiography ◽  
Data Augmentation ◽  
Domain Adaptation ◽  
Synthetic Image ◽  
Wide Range ◽  
The Impact

AbstractDeep learning methods produce promising results when applied to a wide range of medical imaging tasks, including segmentation of artery lumen in computed tomography angiography (CTA) data. However, to perform sufficiently, neural networks have to be trained on large amounts of high quality annotated data. In the realm of medical imaging, annotations are not only quite scarce but also often not entirely reliable. To tackle both challenges, we developed a two-step approach for generating realistic synthetic CTA data for the purpose of data augmentation. In the first step moderately realistic images are generated in a purely numerical fashion. In the second step these images are improved by applying neural domain adaptation. We evaluated the impact of synthetic data on lumen segmentation via convolutional neural networks (CNNs) by comparing resulting performances. Improvements of up to 5% in terms of Dice coefficient and 20% for Hausdorff distance represent a proof of concept that the proposed augmentation procedure can be used to enhance deep learning-based segmentation for artery lumen in CTA images.

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