scholarly journals Prediction of Soil Organic Carbon in a New Target Area by Near-Infrared Spectroscopy: Comparison of the Effects of Spiking in Different Scale Soil Spectral Libraries

Sensors ◽  
2020 ◽  
Vol 20 (16) ◽  
pp. 4357
Author(s):  
Hongyang Li ◽  
Shengyao Jia ◽  
Zichun Le
Keyword(s):  
Organic Carbon ◽  
Soil Organic Carbon ◽  
Prediction Accuracy ◽  
Near Infrared ◽  
Zhejiang Province ◽  
Small Scale ◽  
Calibration Model ◽  
Target Area ◽  
Good Prediction ◽  
Spiked Models

Near-infrared (NIR) spectroscopy is widely used to predict soil organic carbon (SOC) because it is rapid and accurate under proper calibration. However, the prediction accuracy of the calibration model may be greatly reduced if the soil characteristics of some new target areas are different from the existing soil spectral library (SSL), which greatly limits the application potential of the technology. We attempted to solve the problem by building a large-scale SSL or using the spiking method. A total of 983 soil samples were collected from Zhejiang Province, and three SSLs were built according to geographic scope, representing the provincial, municipal, and district scales. The partial least squares (PLS) algorithm was applied to establish the calibration models based on the three SSLs, and the models were used to predict the SOC of two target areas in Zhejiang Province. The results show that the prediction accuracy of each model was relatively poor regardless of the scale of the SSL (residual predictive deviation (RPD) < 2.5). Then, the Kennard-Stone (KS) algorithm was applied to select 5 or 10 spiking samples from each target area. According to different SSLs and numbers of spiking samples, different spiked models were established by the PLS. The results show that the predictive ability of each model was improved by the spiking method, and the improvement effect was inversely proportional to the scale of the SSL. The spiked models built by combining the district scale SSL and a few spiking samples achieved good prediction of the SOC of two target areas (RPD = 2.72 and 3.13). Therefore, it is possible to accurately measure the SOC of new target areas by building a small-scale SSL with a few spiking samples.

scholarly journals Influence of environmental factors on the detection of blood in sheep faeces using visible-near infrared spectroscopy as a measure of Haemonchus contortus infection

2020 ◽  
Author(s):  
Elise Ai Hwee Kho ◽  
Jill N. Fernandes ◽  
Andrew C. Kotze ◽  
Glen P. Fox ◽  
Maggy T. Sikulu-Lord ◽  
...  
Keyword(s):  
Haemonchus Contortus ◽  
Prediction Accuracy ◽  
Near Infrared ◽  
Nir Spectroscopy ◽  
Diagnostic Methods ◽  
Calibration Model ◽  
Good Prediction ◽  
Blood Concentrations ◽  
Calibration Models ◽  
Good Prediction Accuracy

Abstract Background: Existing diagnostic methods for the parasitic gastrointestinal nematode, Haemonchus contortus, are time consuming and require specialised expertise, limiting their utility in the field. A practical, on-farm diagnostic tool could facilitate timely treatment decisions, preventing production and welfare loss in the flock. We previously demonstrated the ability of visible-near infrared (vis-NIR) spectroscopy to detect and quantify blood in sheep faeces with high accuracy. Here we investigate whether variation in sheep type and environment affect the prediction accuracy of vis-NIR spectroscopy in quantifying blood in faeces.Methods: Vis-NIR spectra were obtained from worm-free sheep faeces from different environments in South Australia (SA) and New South Wales (NSW), Australia and spiked with various sheep blood concentrations collected. Spectra were analysed using principal component analysis (PCA), and calibration models were built around the haemoglobin (Hb) wavelength region (387 – 609 nm) using partial least squares (PLS) regression. Models were used to predict Hb concentrations in spiked faeces from SA and naturally infected Queensland (QLD) faeces. Naturally occurring blood in QLD samples was quantified using Hemastix® and FAMACHA© scores.Results: PCA showed that location, class of sheep and pooled/individual samples were factors affecting the Hb predictions in sheep faeces. The calibration models successfully differentiated ‘healthy’ SA samples from those requiring anthelmintic treatment with moderate to good prediction accuracy (sensitivity: 57 – 94%, specificity: 44 – 79%). The models were not predictive for naturally infected QLD samples, which may be due in part to variability of faecal background and blood chemistry between samples, or the difference in validation methods used for blood quantification. PCA of QLD samples, however, identified a difference between samples containing high and low quantities of blood.Conclusion: This study demonstrates the potential of vis-NIR spectroscopy for estimating blood concentration in faeces from various types of sheep and environmental backgrounds. However, the calibration models developed here did not capture enough environmental variation to accurately predict Hb in faeces collected from environments different to those used in the calibration model. Consequently, it will be necessary to establish models that incorporate samples that are more representative of areas where H. contortus is endemic for the accurate prediction of H. contortus infections in these regions.

scholarly journals Influence of environmental factors on the detection of blood in sheep faeces using visible-near infrared spectroscopy as a measure of Haemonchus contortus infection

2020 ◽  
Author(s):  
Elise Ai Hwee Kho ◽  
Jill N. Fernandes ◽  
Andrew C. Kotze ◽  
Glen P. Fox ◽  
Maggy T. Sikulu-Lord ◽  
...  
Keyword(s):  
Haemonchus Contortus ◽  
Prediction Accuracy ◽  
Near Infrared ◽  
Nir Spectroscopy ◽  
Diagnostic Methods ◽  
Calibration Model ◽  
Good Prediction ◽  
Blood Concentrations ◽  
Calibration Models ◽  
Good Prediction Accuracy

Abstract Background: Existing diagnostic methods for the parasitic gastrointestinal nematode, Haemonchus contortus, are time consuming and require specialised expertise, limiting their utility in the field. A practical, on-farm diagnostic tool could facilitate timely treatment decisions, preventing production and welfare loss in the flock. We previously demonstrated the ability of visible-near infrared (vis-NIR) spectroscopy to detect and quantify blood in sheep faeces with high accuracy. Here we investigate whether variation in sheep type and environment affect the prediction accuracy of vis-NIR spectroscopy in quantifying blood in faeces. Methods: Vis-NIR spectra were obtained from worm-free sheep faeces collected from different environments and sheep types in South Australia (SA) and New South Wales (NSW), Australia and spiked with various sheep blood concentrations. Spectra were analysed using principal component analysis (PCA), and calibration models were built around the haemoglobin (Hb) wavelength region (387 – 609 nm) using partial least squares (PLS) regression. Models were used to predict Hb concentrations in spiked faeces from SA and naturally infected sheep faeces from Queensland (QLD). QLD samples were quantified using Hemastix® and FAMACHA © scores. Results: PCA showed that location, class of sheep and pooled/individual samples were factors affecting the Hb predictions. The models successfully differentiated ‘healthy’ SA samples from those requiring anthelmintic treatment with moderate to good prediction accuracy (sensitivity: 57 – 94%, specificity: 44 – 79%). The models were not predictive for blood in naturally infected QLD samples, which may be due in part to variability of faecal background and blood chemistry between samples, or the difference in validation methods used for blood quantification. PCA of QLD samples, however, identified a difference between samples containing high and low quantities of blood. Conclusion: This study demonstrates the potential of vis-NIR spectroscopy for estimating blood concentration in faeces from various types of sheep and environmental backgrounds. However, the calibration models developed here did not capture enough environmental variation to accurately predict Hb in faeces collected from environments different to those used in the calibration model. Consequently, it will be necessary to establish models that incorporate samples that are more representative of areas where H. contortus is endemic.

Reducing moisture effects on soil organic carbon content prediction in visible and near-infrared spectra with an external parameter othogonalization algorithm

2020 ◽  
Vol 100 (3) ◽  
pp. 253-262
Author(s):  
Yue Cao ◽  
Nisha Bao ◽  
Shanjun Liu ◽  
Wei Zhao ◽  
Shimeng Li
Keyword(s):  
Organic Carbon ◽  
Soil Organic Carbon ◽  
Infrared Spectra ◽  
Prediction Accuracy ◽  
Near Infrared ◽  
Soil Samples ◽  
External Parameter ◽  
Moisture Effect ◽  
Field Spectroscopy ◽  
Near Infrared Spectra

Field spectroscopy and other efficient hyperspectral techniques have been widely used to measure soil properties, including soil organic carbon (SOC) content. However, reflectance measurements based on field spectroscopy are quite sensitive to uncontrolled variations in surface soil conditions, such as moisture content; hence, such variations lead to drastically reduced prediction accuracy. The goals of this work are to (i) explore the moisture effect on soil spectra with different SOC levels, (ii) evaluate the selection of optimal parameter for external parameter othogonalization (EPO) in reducing moisture effect, and (iii) improve SOC prediction accuracy for semi-arid soils with various moisture levels by combing the EPO with machine learning method. Soil samples were collected from grassland regions of Inner Mongolia in North China. Rewetting laboratory experiments were conducted to make samples moisturized at five levels. Visible and near-infrared spectra (350–2500 nm) of soil samples rewetted were observed using a hand-held SVC HR-1024 spectroradiometer. Our results show that moisture influences the correlation between SOC content and soil reflectance spectra and that moisture has a greater impact on the spectra of samples with low SOC. An EPO algorithm can quantitatively extract information of the affected spectra from the spectra of moist soil samples by an optimal singular value. A SOC model that effectively couples EPO with random forest (RF) outperforms partial least-square regression (PLSR)-based models. The EPO–RF model generates better results with R2 of 0.86 and root-mean squared error (RMSE) of 3.82 g kg−1, whereas a PLSR model gives R2 of 0.79 and RMSE of 4.68 g kg−1.

scholarly journals Online Measurement of Soil Organic Carbon as Correlated with Wheat Normalised Difference Vegetation Index in a Vertisol Field

2014 ◽  
Vol 2014 ◽  
pp. 1-12 ◽  
Author(s):  
Yücel Tekin ◽  
Yahya Ulusoy ◽  
Zeynal Tümsavaş ◽  
Abdul M. Mouazen
Keyword(s):  
Organic Carbon ◽  
Soil Organic Carbon ◽  
Vegetation Index ◽  
Near Infrared ◽  
Nir Spectroscopy ◽  
Wheat Crop ◽  
Kappa Statistics ◽  
Calibration Model ◽  
Online Measurement ◽  
Normalised Difference Vegetation Index

This study explores the potential of visible and near infrared (vis-NIR) spectroscopy for online measurement of soil organic carbon (SOC). It also attempts to explore correlations and similarities between the spatial distribution of SOC and normalized differential vegetation index (NDVI) of a wheat crop. The online measurement was carried out in a clay vertisol field covering 10 ha of area in Karacabey, Bursa, Turkey. Kappa statistics were carried out between different SOC and NDVI data to investigate potential similarities. Calibration model of SOC in full cross-validationresulted in a good accuracy (R2=0.75, root mean squares error of prediction (RMSEP) = 0.17%, and ratio of prediction deviation (RPD) = 1.81). The validation of the calibration model using laboratory spectra provided comparatively better prediction accuracy (R2=0.70, RMSEP = 0.15%, and RPD = 1.78), as compared to the online measured spectra (R2=0.60, RMSEP = 0.20%, and RPD = 1.41). Although visual similarity was clear, low similarity indicated by a low Kappa value of 0.259 was observed between the online vis-NIR predicted full-point (based on all points measured in the field, e.g., 6486 points) map of SOC and NDVI map.

scholarly journals Digital Mapping of Soil Organic Carbon Using Sentinel Series Data: A Case Study of the Ebinur Lake Watershed in Xinjiang

2021 ◽  
Vol 13 (4) ◽  
pp. 769
Author(s):  
Xiaohang Li ◽  
Jianli Ding ◽  
Jie Liu ◽  
Xiangyu Ge ◽  
Junyong Zhang
Keyword(s):  
Remote Sensing ◽  
Organic Carbon ◽  
Soil Organic Carbon ◽  
Prediction Accuracy ◽  
Lake Basin ◽  
Arid Areas ◽  
Annual Average ◽  
Machine Learning Methods ◽  
Ebinur Lake ◽  
Ebinur Lake Basin

As an important evaluation index of soil quality, soil organic carbon (SOC) plays an important role in soil health, ecological security, soil material cycle and global climate cycle. The use of multi-source remote sensing on soil organic carbon distribution has a certain auxiliary effect on the study of soil organic carbon storage and the regional ecological cycle. However, the study on SOC distribution in Ebinur Lake Basin in arid and semi-arid regions is limited to the mapping of measured data, and the soil mapping of SOC using remote sensing data needs to be studied. Whether different machine learning methods can improve prediction accuracy in mapping process is less studied in arid areas. Based on that, combined with the proposed problems, this study selected the typical area of the Ebinur Lake Basin in the arid region as the study area, took the sentinel data as the main data source, and used the Sentinel-1A (radar data), the Sentinel-2A and the Sentinel-3A (multispectral data), combined with 16 kinds of DEM derivatives and climate data (annual average temperature MAT, annual average precipitation MAP) as analysis. The five different types of data are reconstructed by spatial data and divided into four spatial resolutions (10, 100, 300, and 500 m). Seven models are constructed and predicted by machine learning methods RF and Cubist. The results show that the prediction accuracy of RF model is better than that of Cubist model, indicating that RF model is more suitable for small areas in arid areas. Among the three data sources, Sentinel-1A has the highest SOC prediction accuracy of 0.391 at 10 m resolution under the RF model. The results of the importance of environmental variables show that the importance of Flow Accumulation is higher in the RF model and the importance of SLOP in the DEM derivative is higher in the Cubist model. In the prediction results, SOC is mainly distributed in oasis and regions with more human activities, while SOC is less distributed in other regions. This study provides a certain reference value for the prediction of small-scale soil organic carbon spatial distribution by means of remote sensing and environmental factors.

Building a near infrared spectral library for soil organic carbon estimation in the Limpopo National Park, Mozambique

Geoderma ◽  
2012 ◽  
Vol 183-184 ◽  
pp. 41-48 ◽  
Author(s):  
A.H. Cambule ◽  
D.G. Rossiter ◽  
J.J. Stoorvogel ◽  
E.M.A. Smaling
Keyword(s):  
Organic Carbon ◽  
Soil Organic Carbon ◽  
National Park ◽  
Near Infrared ◽  
Spectral Library ◽  
Infrared Spectral

Measuring The Tensile Strain of Wood By Visible And Near-Infrared Spatially Resolved Spectroscopy

2021 ◽  
Author(s):  
Ma Te ◽  
Tetsuya Inagaki ◽  
Masato Yoshida ◽  
Mayumi Ichino ◽  
Satoru Tsuchikawa
Keyword(s):  
Light Scattering ◽  
Prediction Accuracy ◽  
Tensile Strain ◽  
Near Infrared ◽  
Mean Squared Error ◽  
Calibration Model ◽  
Spatially Resolved ◽  
Squared Error ◽  
Stiffness Evaluation ◽  
Spatially Resolved Spectroscopy

Abstract Wood has various mechanical properties, so stiffness evaluation is critical for quality management. Using conventional strain gauges constantly is high cost, also challenging to measure precious wood materials due to the use of strong adhesive. This study demonstrates the correlation between light scattering changes inside the wood cell walls and tensile strain. A multifiber-based visible-near-infrared (Vis–NIR) spatially resolved spectroscopy (SRS) system was designed to rapidly and conventiently acquire such light scattering changes. For the preliminary experiment, samples with different thicknesses were measured to evaluate the influence of thickness. The differences in Vis–NIR SRS spectral data diminish with an increase in sample thickness, which suggests that the SRS method can successfully measure the whole strain (i.e., surface and inside) of wood samples. Then, for the primary experiment, 18 wood samples with the same thickness (2 mm) were tested to construct a strain calibration model. The prediction accuracy was characterized by a determination coefficient (R2) of 0.86 with a root mean squared error (RMSE) of 297.89 με for five-fold cross-validation; for test validation, The prediction accuracy was characterized by an R2 of 0.82 and an RMSE of 345.44 με.

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