scholarly journals Multi-Pig Part Detection and Association with a Fully-Convolutional Network

Sensors ◽  
2019 ◽  
Vol 19 (4) ◽  
pp. 852 ◽  
Author(s):  
Eric Psota ◽  
Mateusz Mittek ◽  
Lance Pérez ◽  
Ty Schmidt ◽  
Benny Mote

Computer vision systems have the potential to provide automated, non-invasive monitoring of livestock animals, however, the lack of public datasets with well-defined targets and evaluation metrics presents a significant challenge for researchers. Consequently, existing solutions often focus on achieving task-specific objectives using relatively small, private datasets. This work introduces a new dataset and method for instance-level detection of multiple pigs in group-housed environments. The method uses a single fully-convolutional neural network to detect the location and orientation of each animal, where both body part locations and pairwise associations are represented in the image space. Accompanying this method is a new dataset containing 2000 annotated images with 24,842 individually annotated pigs from 17 different locations. The proposed method achieves over 99% precision and over 96% recall when detecting pigs in environments previously seen by the network during training. To evaluate the robustness of the trained network, it is also tested on environments and lighting conditions unseen in the training set, where it achieves 91% precision and 67% recall. The dataset is publicly available for download.

PLoS ONE ◽  
2020 ◽  
Vol 15 (12) ◽  
pp. e0244378
Author(s):  
Peng Zhou ◽  
Zheng Liu ◽  
Hemmings Wu ◽  
Yuli Wang ◽  
Yong Lei ◽  
...  

Currently, injection sites of probes, cannula, and optic fibers in stereotactic neurosurgery are typically located manually. This step involves location estimations based on human experiences and thus introduces errors. In order to reduce localization error and improve repeatability of experiments and treatments, we investigate an automated method to locate injection sites. This paper proposes a localization framework, which integrates a region-based convolutional network and a fully convolutional network, to locate specific anatomical points on skulls of rodents. Experiment results show that the proposed localization framework is capable of identifying and locatin bregma and lambda in rodent skull anatomy images with mean errors less than 300 μm. This method is robust to different lighting conditions and mouse orientations, and has the potential to simplify the procedure of locating injection sites.


2020 ◽  
Vol 2020 ◽  
pp. 1-10
Author(s):  
Xiaolu Jiang ◽  
Yanqiu Zeng ◽  
Shixiao Xiao ◽  
Shaojie He ◽  
Caizhi Ye ◽  
...  

An artificial stent implantation is one of the most effective ways to treat coronary artery diseases. It is vital in vascular medical imaging, such as intravascular optical coherence tomography (IVOCT), to be able to track the position of stents in blood vessels effectively. We trained two models, the “You Only Look Once” version 3 (YOLOv3) and the Region-based Fully Convolutional Network (R-FCN), to detect metal support struts in IVOCT, respectively. After rotating the original images in the training set for data augmentation, and modifying the scale of the conventional anchor box in both two algorithms to fit the size of the target strut, YOLOv3 and R-FCN achieved precision, recall, and AP all above 95% in 0.4 IoU threshold. And R-FCN performs better than YOLOv3 in all relevant indicators.


2021 ◽  
pp. 1-12
Author(s):  
Xingchen Fan ◽  
Minmin Cao ◽  
Cheng Liu ◽  
Cheng Zhang ◽  
Chunyu Li ◽  
...  

BACKGROUND: MicroRNAs (miRNAs), with noticeable stability and unique expression pattern in plasma of patients with various diseases, are powerful non-invasive biomarkers for cancer detection including endometrial cancer (EC). OBJECTIVE: The objective of this study was to identify promising miRNA biomarkers in plasma to assist the clinical screening of EC. METHODS: A total of 93 EC and 79 normal control (NC) plasma samples were analyzed using Quantitative Real-time Polymerase Chain Reaction (qRT-PCR) in this four-stage experiment. The receiver operating characteristic curve (ROC) analysis was conducted to evaluate the diagnostic value. Additionally, the expression features of the identified miRNAs were further explored in tissues and plasma exosomes samples. RESULTS: The expression of miR-142-3p, miR-146a-5p, and miR-151a-5p was significantly overexpressed in the plasma of EC patients compared with NCs. Areas under the ROC curve of the 3-miRNA signature were 0.729, 0.751, and 0.789 for the training, testing, and external validation phases, respectively. The diagnostic performance of the identified signature proved to be stable in the three public datasets and superior to the other miRNA biomarkers in EC diagnosis. Moreover, the expression of miR-151a-5p was significantly elevated in EC plasma exosomes. CONCLUSIONS: A signature consisting of 3 plasma miRNAs was identified and showed potential for the non-invasive diagnosis of EC.


Author(s):  
Vinit Sarode ◽  
Animesh Dhagat ◽  
Rangaprasad Arun Srivatsan ◽  
Nicolas Zevallos ◽  
Simon Lucey ◽  
...  

IEEE Access ◽  
2021 ◽  
Vol 9 ◽  
pp. 673-682
Author(s):  
Jian Ji ◽  
Xiaocong Lu ◽  
Mai Luo ◽  
Minghui Yin ◽  
Qiguang Miao ◽  
...  

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